Wall clock time and date at job start Mon Mar 30 2020 01:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48503 * 109.47029 * 270.00048 * 3 2 1 5 5 H 1.48494 * 109.47097 * 29.99983 * 3 2 1 6 6 H 1.48492 * 109.47132 * 150.00391 * 3 2 1 7 7 C 1.37873 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47370 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47082 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54260 * 68.37811 * 11 10 9 13 13 O 1.42101 * 110.54438 * 291.61770 * 11 10 9 14 14 N 1.65605 * 104.44812 * 179.97438 * 11 10 9 15 15 C 1.47512 * 121.58004 * 97.79176 * 14 11 10 16 16 C 1.53258 * 108.21824 * 133.14398 * 15 14 11 17 17 O 1.42874 * 109.81431 * 55.43941 * 16 15 14 18 18 C 1.43258 * 114.19730 * 294.51481 * 17 16 15 19 19 C 1.47119 * 121.58384 * 277.81346 * 14 11 10 20 20 C 1.52523 * 118.00646 * 9.08782 * 19 14 11 21 21 C 1.52561 * 117.94491 * 78.33626 * 19 14 11 22 22 H 0.96998 * 119.99795 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47155 * 59.99556 * 9 7 2 24 24 H 1.09000 * 109.46902 * 299.99712 * 9 7 2 25 25 H 1.09008 * 109.46947 * 59.99755 * 10 9 7 26 26 H 1.08992 * 109.47112 * 299.99875 * 10 9 7 27 27 H 1.08997 * 109.71960 * 13.45899 * 15 14 11 28 28 H 1.09008 * 109.71551 * 252.82245 * 15 14 11 29 29 H 1.09006 * 109.41190 * 295.33392 * 16 15 14 30 30 H 1.08998 * 109.35829 * 175.50799 * 16 15 14 31 31 H 1.08999 * 109.67810 * 298.65630 * 18 17 16 32 32 H 1.09002 * 109.70620 * 178.13743 * 18 17 16 33 33 H 1.09003 * 117.51428 * 215.35364 * 20 19 14 34 34 H 1.08997 * 117.50953 * 0.43497 * 20 19 14 35 35 H 1.09003 * 117.50349 * 359.45728 * 21 19 14 36 36 H 1.08993 * 117.51229 * 144.51164 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3381 -5.2330 -0.0021 12 8 0.6647 -5.4194 -1.2394 13 8 0.6637 -5.4199 1.2346 14 7 2.5203 -6.3927 -0.0025 15 6 2.9524 -7.0558 1.2424 16 6 3.0107 -8.5656 0.9857 17 8 3.8601 -8.8345 -0.1312 18 6 3.3700 -8.3258 -1.3776 19 6 3.1897 -6.8102 -1.2442 20 6 2.9209 -6.0019 -2.5094 21 6 4.2787 -5.9033 -1.8092 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8712 -3.6047 0.8891 26 1 2.8725 -3.6040 -0.8909 27 1 2.2380 -6.8455 2.0382 28 1 3.9397 -6.6931 1.5286 29 1 2.0074 -8.9364 0.7755 30 1 3.4046 -9.0674 1.8695 31 1 2.4122 -8.7901 -1.6123 32 1 4.0865 -8.5419 -2.1700 33 1 2.8799 -6.5441 -3.4542 34 1 2.2490 -5.1476 -2.4278 35 1 4.4998 -4.9840 -1.2666 36 1 5.1309 -6.3807 -2.2925 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619797008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:32 Heat of formation + Delta-G solvation = -84.979489 kcal Electronic energy + Delta-G solvation = -20408.353662 eV Core-core repulsion = 17213.972669 eV Total energy + Delta-G solvation = -3194.380994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77836 -37.19093 -36.24988 -35.53145 -34.01336 -33.75852 -31.21611 -29.11988 -26.84151 -25.57862 -23.31147 -22.41231 -21.75564 -20.49679 -18.39526 -17.34856 -17.07116 -16.60302 -15.88761 -15.61054 -15.33900 -15.20004 -14.76878 -14.56404 -13.94884 -13.69246 -13.38722 -12.95401 -12.54362 -12.20515 -11.98850 -11.86766 -11.77812 -11.70149 -11.31113 -11.10966 -11.02369 -10.92020 -10.57187 -10.54895 -10.43105 -10.38014 -9.88361 -9.75748 -9.29412 -8.67002 -8.53807 -6.15887 -4.21792 0.62722 2.79787 3.23960 3.30330 3.33066 3.43757 3.88592 4.20087 4.34197 4.38371 4.43923 4.52149 4.73644 4.92634 5.01923 5.11379 5.19302 5.35206 5.39646 5.40506 5.48969 5.58162 5.65938 5.66732 5.77230 5.98106 6.04531 6.12090 6.43101 6.56236 6.93065 7.24195 7.29852 7.76938 8.13076 8.81475 9.43308 10.95157 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.005131 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.264571 B = 5455.611685 C = 5710.964655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.590 4.590 11 S 2.588 3.412 12 O -0.955 6.955 13 O -0.962 6.962 14 N -0.978 5.978 15 C 0.084 3.916 16 C 0.053 3.947 17 O -0.378 6.378 18 C 0.101 3.899 19 C 0.075 3.925 20 C -0.177 4.177 21 C -0.188 4.188 22 H 0.265 0.735 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 -15.754 -1.437 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.723 4.723 11 S 2.688 3.312 12 O -0.946 6.946 13 O -0.953 6.953 14 N -0.813 5.813 15 C -0.041 4.041 16 C -0.026 4.026 17 O -0.296 6.296 18 C 0.023 3.977 19 C -0.015 4.015 20 C -0.214 4.214 21 C -0.227 4.227 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.484 -15.957 -1.370 17.678 hybrid contribution 0.792 1.531 0.030 1.724 sum 8.276 -14.426 -1.340 16.685 Atomic orbital electron populations 1.69954 1.06133 1.27262 1.49486 1.25066 0.94973 0.99559 0.94826 0.86458 0.79711 0.82790 0.78276 1.20415 1.20964 1.19750 1.20982 0.93054 0.89674 1.52282 0.92032 1.18967 0.92628 0.90540 0.98854 1.30577 1.13711 1.17867 1.10161 1.05845 0.74688 0.76449 0.74174 1.93530 1.71518 1.84937 1.44588 1.93519 1.71087 1.85300 1.45383 1.57819 1.56915 1.55331 1.11190 1.22192 1.01873 0.93564 0.86464 1.22845 0.95171 0.94669 0.89882 1.87955 1.48071 1.77587 1.15940 1.22355 1.00153 0.88476 0.86736 1.20989 1.01121 0.94064 0.85319 1.23712 0.99185 1.03284 0.95269 1.23602 0.93233 1.02220 1.03694 0.92482 0.94841 0.94888 0.86137 0.86202 0.87560 0.90643 0.92550 0.87709 0.91936 0.87578 0.87022 0.86000 0.87924 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.59 -11.41 6.03 37.16 0.22 -11.19 16 11 S 2.59 47.64 4.94 -107.50 -0.53 47.11 16 12 O -0.96 -19.50 14.87 -57.54 -0.86 -20.35 16 13 O -0.96 -20.01 16.50 -57.54 -0.95 -20.96 16 14 N -0.98 -14.20 3.33 -99.59 -0.33 -14.53 16 15 C 0.08 1.02 6.74 -3.35 -0.02 1.00 16 16 C 0.05 0.56 6.87 37.29 0.26 0.81 16 17 O -0.38 -4.42 10.75 -35.23 -0.38 -4.80 16 18 C 0.10 1.10 6.75 37.27 0.25 1.35 16 19 C 0.07 0.96 2.59 -131.84 -0.34 0.62 16 20 C -0.18 -2.27 8.93 -26.93 -0.24 -2.51 16 21 C -0.19 -2.14 10.08 -26.91 -0.27 -2.42 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 26 H 0.12 2.10 6.70 -51.93 -0.35 1.75 16 27 H 0.11 1.30 6.80 -51.93 -0.35 0.95 16 28 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.12 1.89 5.04 -51.93 -0.26 1.63 16 35 H 0.10 1.22 7.29 -51.93 -0.38 0.84 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -33.83 305.28 -8.53 -42.36 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.11 Total: 0.94 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -0.69 Total: -24.82 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.40 Total: -40.15 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -2.18 Total: -46.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.53 Total: 47.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.83 -8.53 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619797008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.622 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds