Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.87033 * 2 1 4 4 O 1.42903 * 109.46726 * 301.01054 * 3 2 1 5 5 C 1.54330 * 109.87965 * 121.00921 * 2 1 3 6 6 C 1.55161 * 102.93829 * 97.38385 * 5 2 1 7 7 H 1.08990 * 111.00384 * 277.42521 * 6 5 2 8 8 O 1.42904 * 111.00059 * 153.61068 * 6 5 2 9 9 C 1.54911 * 101.58396 * 35.50290 * 6 5 2 10 10 N 1.47021 * 110.01587 * 238.89689 * 2 1 3 11 11 C 1.34779 * 125.64380 * 59.40527 * 10 2 1 12 12 O 1.21278 * 120.00002 * 0.02562 * 11 10 2 13 13 C 1.50701 * 119.99498 * 180.02562 * 11 10 2 14 14 S 1.81001 * 109.46719 * 179.97438 * 13 11 10 15 15 C 1.76202 * 99.99950 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99838 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99841 * 0.02562 * 17 15 14 20 20 H 1.48510 * 109.46966 * 89.99934 * 19 17 15 21 21 H 1.48501 * 109.47141 * 209.99803 * 19 17 15 22 22 H 1.48494 * 109.47428 * 330.00236 * 19 17 15 23 23 H 1.09002 * 109.47116 * 59.30683 * 1 2 3 24 24 H 1.09007 * 109.46906 * 179.29754 * 1 2 3 25 25 H 1.08997 * 109.47554 * 299.29790 * 1 2 3 26 26 H 1.09002 * 109.47398 * 61.01298 * 3 2 1 27 27 H 1.09001 * 109.47194 * 181.01479 * 3 2 1 28 28 H 0.96700 * 113.99509 * 180.02562 * 4 3 2 29 29 H 1.08997 * 110.71691 * 215.74766 * 5 2 1 30 30 H 1.08993 * 110.72260 * 339.02209 * 5 2 1 31 31 H 0.96698 * 113.99846 * 179.97438 * 8 6 5 32 32 H 1.08997 * 110.36677 * 81.82638 * 9 6 5 33 33 H 1.08995 * 110.36463 * 204.04150 * 9 6 5 34 34 H 1.08997 * 109.46793 * 299.99415 * 13 11 10 35 35 H 1.08991 * 109.47386 * 59.99811 * 13 11 10 36 36 H 0.97001 * 119.99985 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 8 1.5591 2.1227 -1.1548 5 6 2.0548 -0.7477 1.2439 6 6 2.3557 -2.1673 0.6947 7 1 1.4505 -2.7734 0.6618 8 8 3.3717 -2.8104 1.4668 9 6 2.8619 -1.8473 -0.7340 10 7 2.0332 -0.7136 -1.1828 11 6 1.7783 -0.3861 -2.4651 12 8 1.0791 0.5718 -2.7188 13 6 2.3620 -1.2104 -3.5836 14 16 1.8408 -0.5232 -5.1748 15 6 2.6429 -1.6461 -6.2705 16 1 3.2377 -2.4556 -5.8738 17 6 2.5104 -1.4902 -7.6434 18 7 3.1092 -2.3294 -8.4618 19 14 1.4823 -0.0896 -8.3294 20 1 2.3422 1.1050 -8.5270 21 1 0.8954 -0.4978 -9.6310 22 1 0.3922 0.2376 -7.3757 23 1 -0.3633 0.5246 -0.8837 24 1 -0.3633 -1.0277 -0.0126 25 1 -0.3634 0.5029 0.8962 26 1 1.7052 1.9499 0.8989 27 1 3.1399 1.4314 -0.0182 28 1 1.8501 3.0426 -1.2204 29 1 2.9640 -0.2791 1.6204 30 1 1.2908 -0.7885 2.0202 31 1 3.5935 -3.7007 1.1614 32 1 3.9136 -1.5618 -0.7087 33 1 2.7185 -2.7068 -1.3886 34 1 3.4499 -1.1923 -3.5185 35 1 2.0100 -2.2384 -3.4993 36 1 3.0169 -2.2203 -9.4212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698180809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = -124.577497 kcal Electronic energy + Delta-G solvation = -19987.768172 eV Core-core repulsion = 16791.670080 eV Total energy + Delta-G solvation = -3196.098092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48214 -37.77162 -36.73029 -35.38053 -32.43940 -32.38068 -30.10170 -28.78212 -26.72239 -25.59911 -25.33893 -22.30277 -21.06708 -18.50797 -17.82230 -17.58452 -17.10043 -16.50606 -15.78632 -15.28500 -14.94894 -14.57374 -14.28050 -14.25880 -13.75502 -13.52761 -13.18957 -13.11845 -12.77047 -12.54463 -12.18868 -12.10013 -11.70397 -11.28603 -11.26728 -11.17639 -10.98992 -10.90032 -10.53974 -10.40135 -9.83609 -9.81890 -9.13703 -8.98060 -8.46056 -8.43406 -6.87683 -6.27033 -3.97772 2.70791 3.17106 3.17244 3.34864 3.52717 3.58459 3.79563 4.20064 4.30557 4.35451 4.45814 4.68683 4.78973 4.91466 5.01991 5.12183 5.18892 5.30785 5.32328 5.40037 5.43733 5.54605 5.60763 5.67686 5.77633 5.83660 5.94323 6.06555 6.34584 6.60298 7.26824 7.74043 7.83810 7.96135 8.43291 8.70052 9.19501 10.82319 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.005080 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.562328 B = 5510.376158 C = 6288.795050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.170 3.830 3 C 0.071 3.929 4 O -0.527 6.527 5 C -0.114 4.114 6 C 0.093 3.907 7 H 0.077 0.923 8 O -0.557 6.557 9 C 0.069 3.931 10 N -0.615 5.615 11 C 0.540 3.460 12 O -0.469 6.469 13 C -0.117 4.117 14 S -0.140 6.140 15 C -0.521 4.521 16 H 0.087 0.913 17 C 0.096 3.904 18 N -0.882 5.882 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.235 1.235 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.364 0.636 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.384 0.616 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 2.037 21.438 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.085 3.915 3 C -0.009 4.009 4 O -0.330 6.330 5 C -0.152 4.152 6 C 0.033 3.967 7 H 0.094 0.906 8 O -0.362 6.362 9 C -0.055 4.055 10 N -0.355 5.355 11 C 0.327 3.673 12 O -0.339 6.339 13 C -0.268 4.268 14 S 0.087 5.913 15 C -0.669 4.669 16 H 0.105 0.895 17 C -0.113 4.113 18 N -0.519 5.519 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.210 0.790 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.416 20.974 21.403 hybrid contribution 1.012 -0.790 -0.411 1.348 sum -1.542 2.626 20.563 20.788 Atomic orbital electron populations 1.22105 0.93441 1.02055 1.03617 1.20908 0.95191 0.90835 0.84602 1.22471 0.96933 0.92345 0.89109 1.87055 1.75159 1.27677 1.43125 1.22649 1.02513 0.93714 0.96326 1.22902 0.90503 0.93886 0.89444 0.90560 1.86495 1.58548 1.34259 1.56945 1.22966 0.96070 0.90557 0.95931 1.48410 1.52112 1.30299 1.04635 1.19870 0.81159 0.85037 0.81188 1.90752 1.35496 1.26218 1.81479 1.23272 1.03828 1.02293 0.97375 1.84761 1.68064 1.42931 0.95569 1.22337 1.35857 1.15773 0.92911 0.89528 1.24705 0.94732 0.96032 0.95805 1.69940 1.42097 1.36270 1.03547 0.86729 0.82437 0.82543 0.80111 1.19232 1.19991 1.15888 0.89590 0.92799 0.92256 0.93551 0.94068 0.79036 0.89483 0.89215 0.76863 0.90741 0.90127 0.89102 0.89075 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.22 37.16 0.31 -1.60 16 2 C 0.17 2.04 0.79 -130.84 -0.10 1.94 16 3 C 0.07 0.84 5.98 37.16 0.22 1.06 16 4 O -0.53 -7.83 9.42 -59.64 -0.56 -8.39 16 5 C -0.11 -1.04 5.76 -24.89 -0.14 -1.18 16 6 C 0.09 0.82 4.43 -24.58 -0.11 0.71 16 7 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 8 O -0.56 -4.61 13.47 -35.23 -0.47 -5.09 16 9 C 0.07 0.76 6.43 -2.53 -0.02 0.74 16 10 N -0.61 -8.80 2.82 -155.81 -0.44 -9.24 16 11 C 0.54 10.17 7.34 -10.98 -0.08 10.09 16 12 O -0.47 -10.25 11.64 -18.85 -0.22 -10.46 16 13 C -0.12 -2.38 5.16 36.01 0.19 -2.19 16 14 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 15 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 16 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 17 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.83 13.97 55.49 0.78 -26.06 16 19 Si 0.86 22.04 27.74 -169.99 -4.71 17.33 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 23 H 0.09 1.39 6.32 -51.93 -0.33 1.06 16 24 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.36 3.94 9.12 45.56 0.42 4.35 16 29 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 30 H 0.09 0.68 7.83 -51.93 -0.41 0.27 16 31 H 0.38 1.63 9.12 45.56 0.42 2.05 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 34 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 35 H 0.09 1.74 7.85 -51.92 -0.41 1.33 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -36.00 307.11 -6.17 -42.17 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.64 Total: 3.33 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 0.48 Total: -2.60 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.34 Total: -35.30 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.26 Total: -23.94 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.00 -6.17 -42.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698180809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.409 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds