Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.87033 * 2 1 4 4 O 1.42903 * 109.46726 * 301.01054 * 3 2 1 5 5 C 1.54330 * 109.87965 * 121.00921 * 2 1 3 6 6 C 1.55161 * 102.93829 * 97.38385 * 5 2 1 7 7 H 1.08990 * 111.00384 * 277.42521 * 6 5 2 8 8 O 1.42904 * 111.00059 * 153.61068 * 6 5 2 9 9 C 1.54911 * 101.58396 * 35.50290 * 6 5 2 10 10 N 1.47021 * 110.01587 * 238.89689 * 2 1 3 11 11 C 1.34779 * 125.64380 * 59.40527 * 10 2 1 12 12 O 1.21278 * 120.00002 * 0.02562 * 11 10 2 13 13 C 1.50701 * 119.99498 * 180.02562 * 11 10 2 14 14 S 1.81001 * 109.46719 * 179.97438 * 13 11 10 15 15 C 1.76202 * 99.99950 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99838 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99841 * 0.02562 * 17 15 14 20 20 H 1.48510 * 109.46966 * 89.99934 * 19 17 15 21 21 H 1.48501 * 109.47141 * 209.99803 * 19 17 15 22 22 H 1.48494 * 109.47428 * 330.00236 * 19 17 15 23 23 H 1.09002 * 109.47116 * 59.30683 * 1 2 3 24 24 H 1.09007 * 109.46906 * 179.29754 * 1 2 3 25 25 H 1.08997 * 109.47554 * 299.29790 * 1 2 3 26 26 H 1.09002 * 109.47398 * 61.01298 * 3 2 1 27 27 H 1.09001 * 109.47194 * 181.01479 * 3 2 1 28 28 H 0.96700 * 113.99509 * 180.02562 * 4 3 2 29 29 H 1.08997 * 110.71691 * 215.74766 * 5 2 1 30 30 H 1.08993 * 110.72260 * 339.02209 * 5 2 1 31 31 H 0.96698 * 113.99846 * 179.97438 * 8 6 5 32 32 H 1.08997 * 110.36677 * 81.82638 * 9 6 5 33 33 H 1.08995 * 110.36463 * 204.04150 * 9 6 5 34 34 H 1.08997 * 109.46793 * 299.99415 * 13 11 10 35 35 H 1.08991 * 109.47386 * 59.99811 * 13 11 10 36 36 H 0.97001 * 119.99985 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 8 1.5591 2.1227 -1.1548 5 6 2.0548 -0.7477 1.2439 6 6 2.3557 -2.1673 0.6947 7 1 1.4505 -2.7734 0.6618 8 8 3.3717 -2.8104 1.4668 9 6 2.8619 -1.8473 -0.7340 10 7 2.0332 -0.7136 -1.1828 11 6 1.7783 -0.3861 -2.4651 12 8 1.0791 0.5718 -2.7188 13 6 2.3620 -1.2104 -3.5836 14 16 1.8408 -0.5232 -5.1748 15 6 2.6429 -1.6461 -6.2705 16 1 3.2377 -2.4556 -5.8738 17 6 2.5104 -1.4902 -7.6434 18 7 3.1092 -2.3294 -8.4618 19 14 1.4823 -0.0896 -8.3294 20 1 2.3422 1.1050 -8.5270 21 1 0.8954 -0.4978 -9.6310 22 1 0.3922 0.2376 -7.3757 23 1 -0.3633 0.5246 -0.8837 24 1 -0.3633 -1.0277 -0.0126 25 1 -0.3634 0.5029 0.8962 26 1 1.7052 1.9499 0.8989 27 1 3.1399 1.4314 -0.0182 28 1 1.8501 3.0426 -1.2204 29 1 2.9640 -0.2791 1.6204 30 1 1.2908 -0.7885 2.0202 31 1 3.5935 -3.7007 1.1614 32 1 3.9136 -1.5618 -0.7087 33 1 2.7185 -2.7068 -1.3886 34 1 3.4499 -1.1923 -3.5185 35 1 2.0100 -2.2384 -3.4993 36 1 3.0169 -2.2203 -9.4212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698180809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = -153.718296 kcal Electronic energy + Delta-G solvation = -19989.031812 eV Core-core repulsion = 16791.670080 eV Total energy + Delta-G solvation = -3197.361732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53981 -38.94795 -37.65750 -36.31312 -34.68768 -33.54143 -31.03163 -30.24072 -27.86260 -27.65072 -26.25456 -23.30063 -22.03908 -20.05924 -19.24509 -18.54785 -18.14363 -17.72985 -17.15556 -16.84494 -16.55652 -15.97965 -15.44781 -15.34238 -14.98170 -14.72494 -14.64303 -14.26292 -14.21065 -13.46787 -13.44651 -13.33559 -13.05934 -12.98181 -12.88651 -12.57745 -12.17323 -12.07143 -11.87400 -11.68440 -11.18154 -11.12810 -10.78815 -10.57783 -10.53391 -9.60101 -9.00187 -8.52909 -6.23392 0.96773 1.30352 1.45066 1.52979 1.72921 2.03718 2.24326 2.67509 2.85378 3.01217 3.38359 3.56462 3.60848 3.85460 3.97294 4.10125 4.17022 4.19024 4.34989 4.42573 4.50979 4.55959 4.64332 4.71274 4.85177 4.86637 4.94156 5.08232 5.33896 5.58186 5.69291 6.09201 6.48079 6.83861 6.92306 6.99610 7.30808 8.59739 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.005080 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.562328 B = 5510.376158 C = 6288.795050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C 0.066 3.934 4 O -0.560 6.560 5 C -0.106 4.106 6 C 0.105 3.895 7 H 0.089 0.911 8 O -0.564 6.564 9 C 0.060 3.940 10 N -0.609 5.609 11 C 0.541 3.459 12 O -0.506 6.506 13 C -0.103 4.103 14 S -0.168 6.168 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.047 3.953 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.238 1.238 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.376 0.624 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.401 0.599 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 2.152 23.720 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.076 3.924 3 C -0.013 4.013 4 O -0.365 6.365 5 C -0.144 4.144 6 C 0.045 3.955 7 H 0.107 0.893 8 O -0.372 6.372 9 C -0.063 4.063 10 N -0.347 5.347 11 C 0.327 3.673 12 O -0.380 6.380 13 C -0.254 4.254 14 S 0.059 5.941 15 C -0.679 4.679 16 H 0.078 0.922 17 C -0.158 4.158 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.162 1.162 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.224 0.776 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.801 3.496 23.299 23.726 hybrid contribution 1.183 -0.905 -0.961 1.773 sum -1.618 2.591 22.338 22.546 Atomic orbital electron populations 1.22036 0.93702 1.02042 1.02895 1.21254 0.95119 0.91348 0.84633 1.22643 0.96968 0.92284 0.89364 1.87024 1.75790 1.28929 1.44761 1.22650 1.03383 0.93220 0.95110 1.22771 0.90936 0.94181 0.87644 0.89317 1.86467 1.58333 1.35697 1.56709 1.23246 0.95806 0.89512 0.97773 1.48295 1.51455 1.31061 1.03843 1.19486 0.81026 0.84451 0.82351 1.90745 1.37230 1.27610 1.82379 1.23234 1.04341 1.02896 0.94941 1.84659 1.68146 1.42832 0.98501 1.22477 1.35701 1.15717 0.93994 0.92238 1.25546 0.95785 0.98322 0.96141 1.70014 1.43389 1.37885 1.04224 0.85863 0.80913 0.79667 0.79895 1.18663 1.18157 1.16163 0.93710 0.92334 0.89600 0.90622 0.94029 0.77645 0.88883 0.86892 0.74802 0.90478 0.89695 0.88327 0.87873 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.22 71.98 0.59 -2.82 16 2 C 0.16 3.50 0.79 3.96 0.00 3.51 16 3 C 0.07 1.44 5.98 71.98 0.43 1.87 16 4 O -0.56 -16.41 9.42 -125.64 -1.18 -17.59 16 5 C -0.11 -1.53 5.76 31.79 0.18 -1.35 16 6 C 0.10 1.50 4.43 31.99 0.14 1.64 16 7 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 8 O -0.56 -7.31 13.47 -148.98 -2.01 -9.32 16 9 C 0.06 1.18 6.43 86.86 0.56 1.74 16 10 N -0.61 -16.54 2.82 -765.25 -2.16 -18.70 16 11 C 0.54 20.17 7.34 87.66 0.64 20.81 16 12 O -0.51 -22.30 11.64 20.32 0.24 -22.06 16 13 C -0.10 -4.18 5.16 71.24 0.37 -3.81 16 14 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 15 C -0.53 -31.62 10.04 67.95 0.68 -30.94 16 16 H 0.06 3.74 8.03 -2.91 -0.02 3.71 16 17 C 0.05 2.83 5.50 84.86 0.47 3.29 16 18 N -0.92 -56.44 13.97 21.65 0.30 -56.14 16 19 Si 0.91 45.69 27.74 68.60 1.90 47.59 16 20 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 23 H 0.04 1.43 6.32 -2.39 -0.02 1.41 16 24 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.38 8.09 9.12 -74.06 -0.68 7.42 16 29 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 30 H 0.11 1.17 7.83 -2.39 -0.02 1.15 16 31 H 0.40 2.06 9.12 -74.06 -0.68 1.39 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 34 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 35 H 0.10 3.90 7.85 -2.40 -0.02 3.88 16 36 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -78.61 307.11 -0.18 -78.79 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -0.29 Total: 13.30 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.07 Total: -6.06 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.86 Total: -74.84 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.95 Total: -48.98 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -78.61 -0.18 -78.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698180809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.930 kcal (2) G-P(sol) polarization free energy of solvation -78.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds