Wall clock time and date at job start Mon Mar 30 2020 01:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46995 * 269.99950 * 3 2 1 5 5 H 1.48495 * 109.47486 * 29.99467 * 3 2 1 6 6 H 1.48504 * 109.47183 * 149.99989 * 3 2 1 7 7 C 1.37878 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00260 * 179.97438 * 10 9 7 12 12 O 1.21721 * 119.99812 * 0.02562 * 11 10 9 13 13 C 1.46252 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.34985 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.46997 * 119.99869 * 180.02562 * 14 13 11 16 16 C 1.39955 * 120.11099 * 359.97438 * 15 14 13 17 17 C 1.37718 * 119.98278 * 180.02562 * 16 15 14 18 18 C 1.38893 * 120.24495 * 359.93549 * 17 16 15 19 19 C 1.39582 * 120.10199 * 0.06145 * 18 17 16 20 20 C 1.38082 * 120.00194 * 359.97438 * 19 18 17 21 21 O 1.36540 * 108.59372 * 179.97438 * 19 18 17 22 22 C 1.43979 * 105.45090 * 17.32358 * 21 19 18 23 23 O 1.36395 * 131.32608 * 180.02562 * 18 17 16 24 24 H 0.96994 * 119.99493 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47225 * 59.99362 * 9 7 2 26 26 H 1.09003 * 109.46931 * 299.99298 * 9 7 2 27 27 H 0.97002 * 119.99902 * 359.97438 * 10 9 7 28 28 H 1.07996 * 120.00241 * 0.02562 * 13 11 10 29 29 H 1.07999 * 120.00214 * 0.02562 * 14 13 11 30 30 H 1.08004 * 120.00518 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.87648 * 180.02562 * 17 16 15 32 32 H 1.08006 * 120.05694 * 179.97438 * 20 19 18 33 33 H 1.08997 * 110.56169 * 214.21321 * 22 21 19 34 34 H 1.09002 * 110.56257 * 91.35871 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5571 -5.1058 0.0011 13 6 2.7042 -5.9950 0.0005 14 6 2.2542 -7.2676 0.0005 15 6 3.2094 -8.3849 0.0005 16 6 4.5859 -8.1319 -0.0001 17 6 5.4785 -9.1807 -0.0006 18 6 5.0182 -10.4911 0.0008 19 6 3.6468 -10.7514 0.0014 20 6 2.7455 -9.7053 0.0012 21 8 3.4604 -12.1040 0.0021 22 6 4.7206 -12.6646 0.4152 23 8 5.6860 -11.6803 0.0011 24 1 -0.4849 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 3.1567 -3.4354 0.0002 28 1 3.7660 -5.7977 0.0001 29 1 1.1924 -7.4650 0.0005 30 1 4.9480 -7.1144 -0.0001 31 1 6.5403 -8.9834 -0.0006 32 1 1.6842 -9.9057 0.0012 33 1 4.9010 -13.6139 -0.0893 34 1 4.7458 -12.7940 1.4972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701159573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:18 Heat of formation + Delta-G solvation = -59.679842 kcal Electronic energy + Delta-G solvation = -19246.531896 eV Core-core repulsion = 15917.804026 eV Total energy + Delta-G solvation = -3328.727870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44235 -39.03865 -38.19886 -36.61394 -34.28764 -33.44276 -32.32202 -30.98769 -29.39525 -27.36319 -26.07638 -24.34966 -23.27724 -22.61763 -20.96957 -19.47391 -18.24511 -17.82361 -17.59027 -17.11377 -16.46425 -15.77125 -15.17315 -14.78739 -14.59861 -14.33302 -14.27151 -14.17967 -13.92651 -13.30608 -13.29453 -12.99738 -12.39569 -12.15593 -11.94932 -11.92306 -11.54584 -11.20760 -10.98378 -10.90036 -10.32584 -9.88703 -9.41081 -9.19869 -9.00263 -8.74598 -8.09792 -7.82264 -6.17388 -4.24413 0.34453 0.93622 1.88345 2.45321 3.08841 3.24015 3.30145 3.32495 3.38170 3.96928 4.05690 4.14673 4.30257 4.35047 4.51396 4.65124 4.80054 4.84036 4.88543 5.18262 5.18829 5.24139 5.58841 5.69255 5.75977 5.86735 5.93299 6.08921 6.41431 6.51312 6.79760 7.30428 7.40654 7.50487 7.65882 7.95945 8.60304 8.76383 9.07001 9.42133 10.92869 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.051312 B = 0.002589 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.553311 B =10813.114774 C =11330.695732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.704 5.704 11 C 0.524 3.476 12 O -0.559 6.559 13 C -0.178 4.178 14 C -0.050 4.050 15 C -0.047 4.047 16 C -0.096 4.096 17 C -0.098 4.098 18 C 0.031 3.969 19 C 0.029 3.971 20 C -0.083 4.083 21 O -0.309 6.309 22 C 0.213 3.787 23 O -0.309 6.309 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.392 0.608 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.158 -22.307 1.082 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.351 5.351 11 C 0.311 3.689 12 O -0.440 6.440 13 C -0.198 4.198 14 C -0.070 4.070 15 C -0.048 4.048 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.013 4.013 19 C -0.015 4.015 20 C -0.101 4.101 21 O -0.225 6.225 22 C 0.101 3.899 23 O -0.226 6.226 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.225 0.775 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.169 -22.481 0.983 25.122 hybrid contribution 0.981 0.732 0.054 1.225 sum 12.149 -21.749 1.037 24.934 Atomic orbital electron populations 1.69976 1.06115 1.27330 1.48841 1.24961 0.94928 0.99488 0.94687 0.86403 0.79606 0.82601 0.78225 1.20452 1.21005 1.19740 1.21222 0.93279 0.90431 1.53287 0.91850 1.19145 0.88345 0.81926 0.97885 1.46408 1.11224 1.06152 1.71269 1.18244 0.88440 0.83766 0.78430 1.90783 1.16543 1.85156 1.51543 1.23258 0.99960 0.93471 1.03148 1.22123 0.99261 0.90658 0.94933 1.18756 0.93173 0.91921 1.00910 1.21252 0.91709 0.99213 0.99225 1.19998 1.01078 0.87371 1.03259 1.20015 0.89322 0.88054 1.03931 1.19636 0.93303 0.83919 1.04638 1.20233 0.99454 0.88655 1.01798 1.87388 1.34539 1.15625 1.84979 1.25624 0.71654 0.92456 1.00142 1.87328 1.35692 1.14847 1.84686 0.92425 0.95360 0.95343 0.77531 0.85579 0.84339 0.83675 0.84392 0.84077 0.85155 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 10 N -0.70 -14.67 5.54 -62.94 -0.35 -15.02 16 11 C 0.52 10.41 7.74 -13.04 -0.10 10.31 16 12 O -0.56 -13.41 16.23 5.17 0.08 -13.33 16 13 C -0.18 -2.51 9.41 -37.52 -0.35 -2.86 16 14 C -0.05 -0.64 9.45 -37.19 -0.35 -1.00 16 15 C -0.05 -0.52 5.87 -105.07 -0.62 -1.14 16 16 C -0.10 -0.92 9.40 -39.13 -0.37 -1.29 16 17 C -0.10 -0.92 10.04 -39.53 -0.40 -1.32 16 18 C 0.03 0.33 7.16 -38.84 -0.28 0.06 16 19 C 0.03 0.33 7.13 -39.14 -0.28 0.05 16 20 C -0.08 -0.90 9.80 -39.00 -0.38 -1.28 16 21 O -0.31 -3.22 11.41 -45.82 -0.52 -3.75 16 22 C 0.21 1.52 8.88 101.05 0.90 2.42 16 23 O -0.31 -3.10 11.39 -45.34 -0.52 -3.61 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.39 6.86 8.30 -40.82 -0.34 6.52 16 28 H 0.13 1.34 6.06 -52.49 -0.32 1.02 16 29 H 0.14 1.90 7.52 -52.49 -0.39 1.50 16 30 H 0.15 1.10 6.15 -52.48 -0.32 0.78 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -33.68 306.39 -7.09 -40.77 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.44 Total: 2.75 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.67 Total: -2.85 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.39 Total: -40.28 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.96 Total: -20.69 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.68 -7.09 -40.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701159573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.913 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds