Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38808 * 119.99502 * 2 1 4 4 C 1.38560 * 118.04211 * 180.02562 * 3 2 1 5 5 C 1.50702 * 121.05090 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.46759 * 0.02562 * 5 4 3 7 7 F 1.39900 * 109.47399 * 120.02083 * 5 4 3 8 8 F 1.39898 * 109.47275 * 240.02157 * 5 4 3 9 9 C 1.39484 * 117.90535 * 359.97438 * 4 3 2 10 10 N 1.39042 * 120.15739 * 180.02562 * 9 4 3 11 11 C 1.46506 * 119.99606 * 179.97438 * 10 9 4 12 12 H 1.09000 * 109.47212 * 325.00137 * 11 10 9 13 13 C 1.53002 * 109.47035 * 85.00372 * 11 10 9 14 14 C 1.50701 * 109.46956 * 205.00186 * 11 10 9 15 15 H 1.08001 * 120.00213 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99755 * 180.02562 * 14 11 10 17 17 N 1.31508 * 119.99915 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99825 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47088 * 60.00147 * 18 16 14 20 20 H 1.48496 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47600 * 300.00319 * 18 16 14 22 22 N 1.32489 * 119.68225 * 0.27726 * 9 4 3 23 23 N 1.28350 * 122.06953 * 359.39564 * 22 9 4 24 24 H 1.08998 * 109.47076 * 89.99943 * 1 2 3 25 25 H 1.09004 * 109.47051 * 209.99893 * 1 2 3 26 26 H 1.08995 * 109.46980 * 329.99605 * 1 2 3 27 27 H 1.08008 * 120.98245 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00576 * 359.97438 * 10 9 4 29 29 H 1.09004 * 109.46930 * 299.99770 * 13 11 10 30 30 H 1.09004 * 109.47059 * 59.99372 * 13 11 10 31 31 H 1.08992 * 109.47060 * 179.97438 * 13 11 10 32 32 H 0.97003 * 119.99339 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2022 0.0000 4 6 3.5857 1.1550 -0.0005 5 6 4.4066 2.4188 -0.0012 6 9 3.5544 3.5283 -0.0005 7 9 5.2145 2.4507 1.1405 8 9 5.2129 2.4507 -1.1440 9 6 4.1962 -0.0992 -0.0005 10 7 5.5828 -0.2012 -0.0005 11 6 6.2203 -1.5203 0.0001 12 1 5.6204 -2.2134 0.5899 13 6 6.3290 -2.0348 -1.4367 14 6 7.5983 -1.4120 0.6005 15 1 7.9629 -0.4562 0.9466 16 6 8.3938 -2.5331 0.7070 17 7 7.9500 -3.6969 0.2851 18 14 10.1022 -2.3987 1.4506 19 1 9.9972 -1.8995 2.8453 20 1 10.7483 -3.7358 1.4513 21 1 10.9190 -1.4541 0.6471 22 7 3.4483 -1.1929 -0.0055 23 7 2.1658 -1.1415 0.0010 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6769 2.1466 -0.0004 28 1 6.1282 0.6010 -0.0009 29 1 5.3323 -2.1131 -1.8710 30 1 6.9288 -1.3416 -2.0265 31 1 6.8036 -3.0160 -1.4363 32 1 8.5099 -4.4854 0.3597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728567607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = -114.939363 kcal Electronic energy + Delta-G solvation = -21737.579114 eV Core-core repulsion = 17896.891022 eV Total energy + Delta-G solvation = -3840.688092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -51.36622 -48.85374 -48.81771 -42.13570 -38.14627 -35.39331 -34.94876 -33.41922 -30.68140 -28.58025 -27.67619 -27.29453 -25.06758 -23.34741 -22.47710 -20.22566 -19.67403 -19.40229 -18.89529 -18.31236 -17.75945 -16.85667 -16.42251 -15.76174 -15.63872 -15.42992 -15.25658 -15.23641 -15.20909 -14.95373 -14.84993 -14.42489 -14.28330 -13.66072 -13.50540 -13.10115 -13.05522 -12.96071 -12.78809 -12.38604 -12.23551 -12.02434 -11.81477 -11.30775 -11.11300 -10.68038 -10.54228 -9.01485 -8.20603 -6.38116 -0.56325 0.13137 1.39643 1.42771 1.44343 1.52358 2.08559 2.39359 2.41640 2.47648 2.70739 3.09598 3.17406 3.20233 3.57693 3.74065 3.87828 4.26480 4.39968 4.69413 4.86388 4.90093 4.94450 5.04476 5.09442 5.33310 5.42377 5.55697 5.73898 5.96943 6.16900 6.52763 6.76097 7.32402 7.81847 8.85095 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.006116 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.370542 B = 4576.733458 C = 5513.042689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.007 4.007 3 C 0.000 4.000 4 C -0.274 4.274 5 C 0.528 3.472 6 F -0.159 7.159 7 F -0.177 7.177 8 F -0.177 7.177 9 C 0.366 3.634 10 N -0.686 5.686 11 C 0.279 3.721 12 H 0.020 0.980 13 C -0.132 4.132 14 C -0.556 4.556 15 H 0.064 0.936 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.267 1.267 22 N -0.331 5.331 23 N -0.208 5.208 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.204 0.796 28 H 0.403 0.597 29 H 0.018 0.982 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 13.489 -0.996 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.158 4.158 3 C -0.029 4.029 4 C -0.291 4.291 5 C 0.472 3.528 6 F -0.140 7.140 7 F -0.159 7.159 8 F -0.158 7.158 9 C 0.121 3.879 10 N -0.313 5.313 11 C 0.177 3.823 12 H 0.038 0.962 13 C -0.191 4.191 14 C -0.594 4.594 15 H 0.082 0.918 16 C -0.179 4.179 17 N -0.548 5.548 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.192 1.192 22 N -0.184 5.184 23 N -0.051 5.051 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.221 0.779 28 H 0.241 0.759 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.275 11.457 -1.016 16.822 hybrid contribution 1.601 1.595 0.291 2.279 sum -10.674 13.052 -0.725 16.876 Atomic orbital electron populations 1.20684 0.83660 1.05193 1.04663 1.23319 1.01099 0.88779 1.02572 1.22449 0.90360 1.02398 0.87713 1.20808 0.97144 0.91713 1.19470 1.17694 0.77970 0.83333 0.73755 1.93181 1.69822 1.54793 1.96198 1.93243 1.74663 1.96696 1.51259 1.93235 1.74736 1.96700 1.51118 1.20042 0.88150 0.90365 0.89343 1.45408 1.00451 1.11221 1.74260 1.18497 0.91577 0.78645 0.93615 0.96218 1.21905 0.97661 1.02323 0.97195 1.21452 1.00085 0.95645 1.42230 0.91832 1.25691 1.02345 0.94561 0.95298 1.70016 1.38616 0.99813 1.46347 0.85443 0.78803 0.77482 0.78899 1.19750 1.20632 1.19197 1.73285 0.99770 1.24202 1.21125 1.72614 1.00356 1.27278 1.04866 0.88808 0.90486 0.87314 0.77908 0.75945 0.96279 0.95022 0.90997 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.19 71.24 0.73 -0.50 16 2 C -0.01 -0.19 6.87 42.70 0.29 0.10 16 3 C 0.00 -0.01 9.24 22.48 0.21 0.20 16 4 C -0.27 -8.39 5.42 -19.49 -0.11 -8.50 16 5 C 0.53 14.65 2.81 71.24 0.20 14.85 16 6 F -0.16 -3.49 16.12 44.97 0.73 -2.76 16 7 F -0.18 -5.41 16.36 44.97 0.74 -4.67 16 8 F -0.18 -5.27 16.36 44.97 0.74 -4.53 16 9 C 0.37 14.71 7.47 133.11 0.99 15.71 16 10 N -0.69 -30.23 5.02 -327.68 -1.65 -31.88 16 11 C 0.28 14.58 2.58 44.25 0.11 14.69 16 12 H 0.02 1.18 7.56 -2.39 -0.02 1.16 16 13 C -0.13 -6.72 9.28 71.98 0.67 -6.05 16 14 C -0.56 -30.20 8.73 25.60 0.22 -29.98 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 16 C 0.02 1.19 5.30 84.66 0.45 1.64 16 17 N -0.91 -51.88 11.32 21.45 0.24 -51.64 16 18 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 N -0.33 -14.38 10.39 -55.10 -0.57 -14.95 16 23 N -0.21 -7.60 11.42 -47.57 -0.54 -8.14 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 0.86 8.09 -2.39 -0.02 0.84 16 27 H 0.20 2.60 7.33 -2.91 -0.02 2.58 16 28 H 0.40 16.60 6.14 -92.71 -0.57 16.03 16 29 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -64.67 289.54 6.08 -58.59 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.61 Total: 13.18 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.77 Total: 2.16 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -2.52 Total: -106.61 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 2.20 Total: -11.96 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -64.67 6.08 -58.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728567607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.354 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds