Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31318 * 1 3 3 Si 1.86800 * 120.00181 * 2 1 4 4 H 1.48497 * 109.47205 * 270.00037 * 3 2 1 5 5 H 1.48497 * 109.47011 * 29.99902 * 3 2 1 6 6 H 1.48497 * 109.47321 * 149.99855 * 3 2 1 7 7 C 1.39121 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99801 * 188.61755 * 7 2 1 9 9 N 1.36720 * 120.00276 * 8.61221 * 7 2 1 10 10 C 1.46495 * 119.99761 * 23.37334 * 9 7 2 11 11 C 1.50700 * 109.47065 * 263.70192 * 10 9 7 12 12 O 1.20820 * 120.00236 * 0.02562 * 11 10 9 13 13 O 1.34235 * 119.99781 * 179.97438 * 11 10 9 14 14 C 1.34772 * 119.99849 * 203.37130 * 9 7 2 15 15 O 1.21756 * 120.00776 * 0.02562 * 14 9 7 16 16 C 1.46236 * 119.99860 * 180.02562 * 14 9 7 17 17 C 1.34968 * 120.00003 * 172.52315 * 16 14 9 18 18 C 1.47144 * 120.00329 * 349.28365 * 17 16 14 19 19 C 1.39878 * 120.17154 * 316.21295 * 18 17 16 20 20 C 1.37873 * 119.81926 * 179.69456 * 19 18 17 21 21 C 1.38412 * 120.17655 * 0.60488 * 20 19 18 22 22 C 1.38412 * 120.35130 * 359.67586 * 21 20 19 23 23 C 1.37884 * 120.17366 * 0.02562 * 22 21 20 24 24 H 0.97000 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47395 * 23.70181 * 10 9 7 26 26 H 1.09001 * 109.47438 * 143.69986 * 10 9 7 27 27 H 0.96701 * 116.99360 * 180.02562 * 13 11 10 28 28 H 1.08000 * 119.99328 * 352.24492 * 16 14 9 29 29 H 1.08006 * 119.99701 * 169.28637 * 17 16 14 30 30 H 1.08002 * 120.08898 * 359.97438 * 19 18 17 31 31 H 1.08004 * 119.91110 * 180.29475 * 20 19 18 32 32 H 1.08000 * 119.82845 * 179.69452 * 21 20 19 33 33 H 1.07992 * 119.91530 * 180.02562 * 22 21 20 34 34 H 1.07997 * 120.08550 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4947 2.0464 -1.4000 5 1 1.4447 2.6526 0.7000 6 1 3.5447 1.4402 0.7000 7 6 2.0088 -1.2048 0.0005 8 1 3.0796 -1.2101 0.1407 9 7 1.3367 -2.3823 -0.1762 10 6 0.0391 -2.3901 -0.8561 11 6 -1.0652 -2.3621 0.1690 12 8 -0.7959 -2.3376 1.3466 13 8 -2.3480 -2.3633 -0.2263 14 6 1.8681 -3.5357 0.2749 15 8 2.9464 -3.5293 0.8403 16 6 1.1496 -4.7952 0.0853 17 6 1.7445 -5.9654 0.3991 18 6 3.1834 -6.0005 0.7051 19 6 4.0883 -5.2863 -0.0872 20 6 5.4342 -5.3192 0.2099 21 6 5.8921 -6.0664 1.2813 22 6 5.0037 -6.7806 2.0665 23 6 3.6540 -6.7530 1.7862 24 1 -0.4850 0.8400 0.0004 25 1 -0.0396 -1.5133 -1.4990 26 1 -0.0490 -3.2928 -1.4605 27 1 -3.0212 -2.3443 0.4677 28 1 0.1413 -4.7886 -0.3015 29 1 1.1645 -6.8761 0.4254 30 1 3.7331 -4.7070 -0.9267 31 1 6.1337 -4.7645 -0.3980 32 1 6.9482 -6.0922 1.5060 33 1 5.3687 -7.3609 2.9010 34 1 2.9620 -7.3104 2.4000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -54.995693 kcal Electronic energy + Delta-G solvation = -21235.758267 eV Core-core repulsion = 17907.233517 eV Total energy + Delta-G solvation = -3328.524750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.59405 -38.81422 -37.76577 -35.33403 -34.59715 -33.05774 -31.84159 -30.35535 -29.05983 -27.73998 -25.29605 -23.05157 -21.90383 -21.23610 -20.63348 -18.10826 -17.24008 -17.05666 -16.72017 -16.02244 -15.58219 -14.94743 -14.59647 -14.44322 -14.24146 -13.93275 -13.37390 -13.10239 -12.81892 -12.73617 -12.17764 -11.92013 -11.89515 -11.56316 -11.44899 -11.03775 -10.61894 -10.59312 -10.50178 -10.45067 -10.40179 -9.64774 -9.36946 -9.12601 -8.63209 -8.28767 -7.89401 -7.39740 -6.53072 -4.00229 1.33940 2.04749 2.48099 3.13117 3.19101 3.25123 3.47746 3.83175 4.11207 4.41650 4.43379 4.77144 5.06598 5.24336 5.37069 5.43977 5.58729 5.62267 5.81539 5.93923 5.98902 6.13005 6.42982 6.43535 6.55325 6.57978 6.69832 6.77491 7.01067 7.07807 7.23018 7.41292 7.49276 7.57090 7.98286 8.32319 9.01577 9.03781 9.22574 9.83789 10.54411 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.006503 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.763739 B = 4304.614422 C = 5442.865531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.293 4.293 8 H 0.108 0.892 9 N -0.420 5.420 10 C 0.145 3.855 11 C 0.491 3.509 12 O -0.505 6.505 13 O -0.535 6.535 14 C 0.475 3.525 15 O -0.560 6.560 16 C -0.176 4.176 17 C -0.076 4.076 18 C -0.048 4.048 19 C -0.024 4.024 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.142 4.142 23 C -0.110 4.110 24 H 0.273 0.727 25 H 0.132 0.868 26 H 0.076 0.924 27 H 0.391 0.609 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -8.858 -3.441 9.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.421 4.421 8 H 0.125 0.875 9 N -0.137 5.137 10 C 0.019 3.981 11 C 0.331 3.669 12 O -0.390 6.390 13 O -0.346 6.346 14 C 0.267 3.733 15 O -0.445 6.445 16 C -0.197 4.197 17 C -0.097 4.097 18 C -0.048 4.048 19 C -0.043 4.043 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.160 4.160 23 C -0.128 4.128 24 H 0.084 0.916 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.248 0.752 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.108 -8.630 -3.142 9.251 hybrid contribution -0.597 1.196 0.727 1.522 sum 0.511 -7.434 -2.415 7.833 Atomic orbital electron populations 1.69556 1.06191 1.28138 1.48645 1.25392 0.95534 1.00235 0.96224 0.85735 0.79365 0.80178 0.78350 1.20181 1.20883 1.19240 1.19764 0.93516 0.81864 1.46918 0.87477 1.43389 1.15278 1.06895 1.48173 1.20725 0.81277 1.03768 0.92331 1.23760 0.82024 0.70657 0.90433 1.90617 1.83346 1.45212 1.19848 1.84523 1.18054 1.87164 1.44867 1.18076 0.87923 0.84056 0.83261 1.90728 1.22419 1.86014 1.45305 1.23235 1.00324 0.93800 1.02328 1.22081 0.93052 0.96919 0.97674 1.18804 0.92592 0.97411 0.96019 1.21069 0.92324 0.92661 0.98216 1.20871 0.95659 1.00282 0.98629 1.21023 0.98836 0.97997 0.95934 1.20793 0.93464 1.01583 1.00172 1.21090 0.95326 0.99417 0.96965 0.91591 0.85080 0.90587 0.75226 0.86726 0.85884 0.86859 0.86885 0.87169 0.87047 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.82 8.77 55.50 0.49 -22.33 16 2 C 0.03 0.74 5.13 -17.44 -0.09 0.65 16 3 Si 0.94 20.45 29.56 -169.99 -5.03 15.43 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.29 -7.88 9.28 -15.04 -0.14 -8.02 16 8 H 0.11 3.00 7.41 -52.49 -0.39 2.61 16 9 N -0.42 -10.43 2.17 -117.75 -0.26 -10.69 16 10 C 0.15 3.11 4.83 -5.20 -0.03 3.09 16 11 C 0.49 10.82 5.96 36.01 0.21 11.04 16 12 O -0.51 -13.23 16.69 -18.75 -0.31 -13.54 16 13 O -0.54 -9.50 13.42 -39.27 -0.53 -10.03 16 14 C 0.48 11.50 6.35 -13.05 -0.08 11.41 16 15 O -0.56 -14.97 11.87 5.14 0.06 -14.91 16 16 C -0.18 -3.42 8.92 -37.53 -0.33 -3.75 16 17 C -0.08 -1.32 9.81 -37.13 -0.36 -1.68 16 18 C -0.05 -0.89 4.54 -105.06 -0.48 -1.37 16 19 C -0.02 -0.46 6.60 -39.10 -0.26 -0.72 16 20 C -0.14 -2.37 10.03 -39.65 -0.40 -2.77 16 21 C -0.12 -1.90 10.04 -39.45 -0.40 -2.30 16 22 C -0.14 -2.22 10.03 -39.65 -0.40 -2.62 16 23 C -0.11 -1.84 9.80 -39.10 -0.38 -2.22 16 24 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.13 2.91 6.44 -51.93 -0.33 2.57 16 26 H 0.08 1.32 6.59 -51.93 -0.34 0.98 16 27 H 0.39 5.35 9.10 45.56 0.41 5.76 16 28 H 0.11 1.95 6.25 -52.49 -0.33 1.63 16 29 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.11 2.24 7.02 -52.49 -0.37 1.87 16 31 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -33.15 296.52 -6.83 -39.98 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.60 Total: 10.90 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.13 Total: 0.73 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.23 Total: -33.02 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.78 Total: -38.48 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.15 -6.83 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.014 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds