Wall clock time and date at job start Mon Mar 30 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99692 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00121 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99639 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00336 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47104 * 179.97438 * 12 10 9 14 14 C 1.34235 * 116.99553 * 179.97438 * 13 12 10 15 15 O 1.20820 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99335 * 179.97438 * 14 13 12 17 17 H 1.08998 * 112.83090 * 50.33763 * 16 14 13 18 18 C 1.53525 * 113.58537 * 181.44446 * 16 14 13 19 19 C 1.51614 * 87.24486 * 114.59089 * 18 16 14 20 20 C 1.38367 * 147.52805 * 179.97438 * 19 18 16 21 21 C 1.38094 * 120.33066 * 180.02562 * 20 19 18 22 22 C 1.38249 * 119.95317 * 359.97376 * 21 20 19 23 23 C 1.38093 * 119.95382 * 0.02562 * 22 21 20 24 24 C 1.38251 * 120.41087 * 0.06848 * 23 22 21 25 25 H 0.97000 * 120.00151 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00453 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.47246 * 300.00016 * 12 10 9 28 28 H 1.08997 * 109.47440 * 59.99949 * 12 10 9 29 29 H 1.08995 * 113.58837 * 229.18714 * 18 16 14 30 30 H 1.09000 * 113.58395 * 0.02562 * 18 16 14 31 31 H 1.08003 * 119.83945 * 0.04178 * 20 19 18 32 32 H 1.07996 * 120.02556 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.02693 * 179.97438 * 22 21 20 34 34 H 1.08004 * 119.83734 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 8 2.1874 -5.9666 -0.0016 14 6 1.6743 -7.2070 -0.0016 15 8 0.4765 -7.3652 -0.0017 16 6 2.5923 -8.4020 -0.0027 17 1 3.3590 -8.3471 0.7701 18 6 1.8511 -9.7460 -0.0381 19 6 2.4645 -9.9651 -1.4072 20 6 2.5925 -10.7901 -2.5105 21 6 3.3824 -10.4101 -3.5776 22 6 4.0494 -9.1996 -3.5460 23 6 3.9252 -8.3723 -2.4473 24 6 3.1377 -8.7471 -1.3746 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6168 -4.9209 0.8886 28 1 0.6175 -4.9205 -0.8913 29 1 2.1976 -10.4551 0.7137 30 1 0.7660 -9.6452 -0.0578 31 1 2.0718 -11.7360 -2.5376 32 1 3.4791 -11.0581 -4.4361 33 1 4.6678 -8.9014 -4.3797 34 1 4.4474 -7.4272 -2.4245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745380649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:30 Heat of formation + Delta-G solvation = -77.394548 kcal Electronic energy + Delta-G solvation = -19897.891884 eV Core-core repulsion = 16568.395847 eV Total energy + Delta-G solvation = -3329.496037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.33032 -40.95967 -40.11719 -37.78592 -36.45748 -36.27162 -33.35122 -31.84867 -30.39886 -28.71033 -26.89483 -26.04100 -23.51800 -22.31312 -21.87378 -20.93964 -20.13423 -19.16051 -18.48454 -18.16237 -17.56367 -17.19074 -16.71815 -16.31962 -15.89730 -15.55493 -15.43066 -15.21696 -14.40775 -14.15338 -13.98821 -13.78025 -13.59929 -13.42108 -13.14713 -12.94796 -12.85298 -12.10642 -12.01231 -11.98716 -11.93369 -11.91375 -11.62571 -11.41471 -10.62942 -10.23387 -9.88331 -9.63127 -9.01419 -6.17625 0.17639 0.37047 0.90159 1.27198 1.42667 1.55095 1.82796 1.83496 2.38976 2.71070 2.85867 2.99885 3.07420 3.23929 3.33083 3.57071 3.86429 3.98059 3.98849 4.09428 4.14973 4.20385 4.55468 4.65785 4.73249 4.86527 4.90961 5.05326 5.16460 5.41035 5.50882 5.52062 5.63001 5.85351 5.98153 6.37064 6.47340 6.58567 7.26481 7.69476 8.45534 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.003360 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.965523 B = 8330.224571 C = 8801.127138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.036 4.036 3 Si 1.138 2.862 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.414 4.414 8 H 0.079 0.921 9 N -0.570 5.570 10 C 0.440 3.560 11 O -0.612 6.612 12 C 0.070 3.930 13 O -0.341 6.341 14 C 0.476 3.524 15 O -0.522 6.522 16 C -0.044 4.044 17 H 0.153 0.847 18 C -0.042 4.042 19 C -0.127 4.127 20 C -0.103 4.103 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.103 4.103 24 C -0.158 4.158 25 H 0.261 0.739 26 H 0.388 0.612 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -21.545 -3.557 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.235 4.235 3 Si 0.957 3.043 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.498 6.498 12 C -0.007 4.007 13 O -0.256 6.256 14 C 0.320 3.680 15 O -0.411 6.411 16 C -0.062 4.062 17 H 0.171 0.829 18 C -0.078 4.078 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.223 0.777 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.156 0.844 30 H 0.121 0.879 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.362 -19.902 -3.573 20.498 hybrid contribution -0.462 -1.232 0.009 1.316 sum 2.900 -21.134 -3.564 21.628 Atomic orbital electron populations 1.70943 1.07050 1.29727 1.47036 1.27962 0.96611 1.05384 0.93550 0.82578 0.73674 0.69810 0.78243 1.19331 1.20045 1.19604 1.20618 0.94191 0.85019 1.54478 0.90326 1.41786 1.08856 1.04940 1.65372 1.20055 0.88108 0.85198 0.83934 1.90537 1.15460 1.87598 1.56177 1.22538 0.90219 0.82546 1.05423 1.86574 1.40738 1.15061 1.83268 1.23855 0.88647 0.84228 0.71253 1.90622 1.17361 1.86662 1.46499 1.21440 0.97283 0.90022 0.97500 0.82940 1.21903 1.01179 0.91890 0.92872 1.22521 0.97907 0.95278 0.97012 1.20668 0.99379 1.00296 0.91710 1.21481 0.95598 0.96500 0.98838 1.21337 1.00597 0.94708 0.97697 1.20623 0.98250 1.00305 0.92986 1.21806 1.00505 0.98164 0.95365 0.92790 0.77687 0.87076 0.87815 0.84447 0.87863 0.83488 0.82261 0.83373 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.18 13.68 21.66 0.30 -49.88 16 2 C -0.04 -1.93 5.50 84.93 0.47 -1.46 16 3 Si 1.14 47.73 29.92 68.60 2.05 49.78 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.41 -23.64 9.68 84.04 0.81 -22.83 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.33 5.28 -306.98 -1.62 -30.95 16 10 C 0.44 21.87 7.86 87.66 0.69 22.56 16 11 O -0.61 -35.59 16.08 15.70 0.25 -35.34 16 12 C 0.07 2.69 5.94 71.23 0.42 3.11 16 13 O -0.34 -13.08 9.76 -45.11 -0.44 -13.52 16 14 C 0.48 15.18 7.49 71.24 0.53 15.71 16 15 O -0.52 -17.83 15.45 21.98 0.34 -17.49 16 16 C -0.04 -1.05 4.44 -11.83 -0.05 -1.10 16 17 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 18 C -0.04 -0.76 7.77 30.31 0.24 -0.52 16 19 C -0.13 -2.66 7.49 -19.32 -0.14 -2.80 16 20 C -0.10 -1.76 10.03 22.27 0.22 -1.54 16 21 C -0.11 -1.70 10.04 22.24 0.22 -1.48 16 22 C -0.13 -2.43 10.04 22.24 0.22 -2.21 16 23 C -0.10 -2.60 10.02 22.24 0.22 -2.38 16 24 C -0.16 -4.01 6.99 -19.35 -0.14 -4.14 16 25 H 0.26 13.94 6.78 -92.71 -0.63 13.31 16 26 H 0.39 18.13 6.73 -92.71 -0.62 17.51 16 27 H 0.11 3.73 8.13 -2.38 -0.02 3.71 16 28 H 0.10 3.61 8.13 -2.39 -0.02 3.59 16 29 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 2.04 7.05 -2.39 -0.02 2.03 16 31 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -74.75 307.29 5.26 -69.48 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.66 Total: 26.99 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 3.72 Total: 0.92 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.33 Total: -80.83 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: 0.15 Total: -66.34 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.05 Total: 49.78 kcal Total: -74.75 5.26 -69.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745380649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.910 kcal (2) G-P(sol) polarization free energy of solvation -74.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds