Wall clock time and date at job start Mon Mar 30 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.47091 * 2 1 4 4 C 1.51178 * 110.52507 * 122.63974 * 2 1 3 5 5 C 1.37200 * 132.74629 * 298.65069 * 4 2 1 6 6 C 1.39950 * 119.79332 * 179.97438 * 5 4 2 7 7 C 1.47402 * 120.24913 * 180.02562 * 6 5 4 8 8 O 1.21543 * 120.00130 * 0.02562 * 7 6 5 9 9 O 1.34768 * 119.99676 * 179.72449 * 7 6 5 10 10 C 1.34864 * 117.00017 * 180.27342 * 9 7 6 11 11 H 1.08003 * 119.99714 * 0.02562 * 10 9 7 12 12 C 1.38800 * 120.00257 * 179.97438 * 10 9 7 13 13 N 1.31423 * 119.99512 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 119.99822 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47399 * 89.99842 * 14 12 10 16 16 H 1.48507 * 109.46744 * 209.99777 * 14 12 10 17 17 H 1.48501 * 109.47357 * 329.99533 * 14 12 10 18 18 C 1.39859 * 119.50176 * 0.27648 * 6 5 4 19 19 C 1.37440 * 120.21910 * 359.46369 * 18 6 5 20 20 C 1.39227 * 106.28215 * 118.62284 * 4 2 1 21 21 N 1.39081 * 110.20667 * 0.02562 * 20 4 2 22 22 C 1.34333 * 112.38598 * 0.02562 * 21 20 4 23 23 O 1.21269 * 126.43137 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47220 * 297.36126 * 1 2 3 25 25 H 1.09003 * 109.46570 * 57.35921 * 1 2 3 26 26 H 1.09000 * 109.46970 * 177.35577 * 1 2 3 27 27 H 1.08998 * 109.47328 * 182.64078 * 3 2 1 28 28 H 1.08997 * 109.47358 * 302.63935 * 3 2 1 29 29 H 1.09001 * 109.47387 * 62.64038 * 3 2 1 30 30 H 1.08004 * 120.10356 * 359.94925 * 5 4 2 31 31 H 0.97002 * 119.99473 * 180.02562 * 13 12 10 32 32 H 1.07997 * 119.89420 * 179.71980 * 18 6 5 33 33 H 1.08008 * 119.83169 * 180.30224 * 19 18 6 34 34 H 0.97000 * 123.80720 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4334 0.0000 4 6 2.0601 -0.7636 1.1922 5 6 1.9342 -0.5808 2.5461 6 6 2.5528 -1.4734 3.4289 7 6 2.4236 -1.2869 4.8853 8 8 1.7776 -0.3554 5.3238 9 8 3.0168 -2.1527 5.7307 10 6 2.8547 -1.9280 7.0506 11 1 2.2701 -1.0845 7.3869 12 6 3.4383 -2.7814 7.9767 13 7 3.2806 -2.5621 9.2629 14 14 4.4488 -4.2407 7.3949 15 1 5.8688 -3.8322 7.2474 16 1 4.3504 -5.3390 8.3897 17 1 3.9305 -4.7112 6.0853 18 6 3.2988 -2.5407 2.9187 19 6 3.4140 -2.7175 1.5606 20 6 2.7965 -1.8276 0.6783 21 7 2.7760 -1.7989 -0.7120 22 6 2.0620 -0.7671 -1.1920 23 8 1.8770 -0.5011 -2.3605 24 1 -0.3633 0.4723 0.9127 25 1 -0.3632 0.5543 -0.8654 26 1 -0.3633 -1.0266 -0.0474 27 1 3.1539 1.4148 -0.0473 28 1 1.6729 1.9676 -0.8653 29 1 1.7497 1.9390 0.9127 30 1 1.3598 0.2496 2.9296 31 1 3.6888 -3.1583 9.9101 32 1 3.7826 -3.2307 3.5941 33 1 3.9876 -3.5467 1.1734 34 1 3.2270 -2.4500 -1.2720 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768696587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:16 Heat of formation + Delta-G solvation = -81.633285 kcal Electronic energy + Delta-G solvation = -20595.072969 eV Core-core repulsion = 17265.393126 eV Total energy + Delta-G solvation = -3329.679843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93463 -39.42282 -38.23839 -35.93567 -35.22984 -34.82904 -32.41048 -30.40889 -29.56044 -27.59026 -25.81846 -25.15355 -23.41204 -21.69651 -20.38431 -19.70217 -18.08032 -17.93546 -17.42232 -16.39361 -15.81098 -15.70407 -14.96651 -14.78073 -14.48104 -14.35806 -13.92367 -13.81535 -13.35770 -12.99122 -12.88954 -12.57060 -12.42670 -12.33556 -12.30388 -11.78331 -11.56164 -11.46271 -10.88146 -10.77278 -10.53302 -10.43840 -10.17743 -9.78805 -9.31377 -8.98503 -8.77072 -8.13089 -6.47081 -4.18183 0.77130 1.30856 2.17287 2.75877 3.09247 3.17908 3.25870 3.29836 3.76371 3.96253 4.07549 4.15824 4.27347 4.64820 4.78161 4.80905 5.05866 5.12261 5.29272 5.38621 5.42945 5.52432 5.54325 5.55340 5.77474 5.85651 5.95931 5.98495 6.04633 6.35064 6.44214 6.55401 6.62816 6.87482 7.64106 7.72446 7.94642 8.54598 8.90455 9.58700 10.60776 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.034447 B = 0.004422 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.642823 B = 6329.920883 C = 6954.754513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.051 4.051 3 C -0.127 4.127 4 C -0.145 4.145 5 C -0.010 4.010 6 C -0.105 4.105 7 C 0.447 3.553 8 O -0.537 6.537 9 O -0.242 6.242 10 C -0.373 4.373 11 H 0.112 0.888 12 C 0.065 3.935 13 N -0.867 5.867 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.258 1.258 18 C -0.042 4.042 19 C -0.146 4.146 20 C 0.151 3.849 21 N -0.657 5.657 22 C 0.537 3.463 23 O -0.502 6.502 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.281 0.719 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 0.223 -18.212 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 C -0.184 4.184 4 C -0.148 4.148 5 C -0.029 4.029 6 C -0.107 4.107 7 C 0.295 3.705 8 O -0.433 6.433 9 O -0.151 6.151 10 C -0.449 4.449 11 H 0.129 0.871 12 C -0.139 4.139 13 N -0.505 5.505 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.182 1.182 18 C -0.061 4.061 19 C -0.167 4.167 20 C 0.053 3.947 21 N -0.299 5.299 22 C 0.325 3.675 23 O -0.376 6.376 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.405 0.633 -18.529 18.545 hybrid contribution 0.803 -1.140 -0.207 1.410 sum 0.398 -0.508 -18.737 18.748 Atomic orbital electron populations 1.21675 0.90212 1.02987 1.03575 1.20097 0.98372 0.96735 0.90223 1.21673 1.01358 0.91844 1.03574 1.19545 1.03595 0.97945 0.93669 1.20218 0.95547 0.97660 0.89499 1.19212 1.02440 0.97885 0.91186 1.20266 0.81226 0.82562 0.86442 1.90687 1.41633 1.32538 1.78461 1.83523 1.63527 1.48967 1.19057 1.20720 1.33660 1.14611 0.75875 0.87064 1.24579 0.96920 0.98397 0.94025 1.69594 1.42530 1.38184 1.00227 0.86224 0.80383 0.81023 0.79398 1.19689 1.20632 1.18244 1.21285 0.94676 0.95948 0.94159 1.20285 1.04025 1.00362 0.92026 1.18293 0.97489 0.96414 0.82478 1.43605 1.50985 1.29536 1.05818 1.20597 0.77007 0.80237 0.89693 1.90773 1.58923 1.69849 1.18040 0.90441 0.91151 0.92042 0.92042 0.91153 0.90444 0.84042 0.90821 0.83656 0.85132 0.74980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.64 37.16 0.32 -0.93 16 2 C -0.05 -0.57 1.01 -156.23 -0.16 -0.72 16 3 C -0.13 -1.25 8.64 37.16 0.32 -0.93 16 4 C -0.14 -1.83 4.98 -104.40 -0.52 -2.35 16 5 C -0.01 -0.16 9.58 -39.32 -0.38 -0.53 16 6 C -0.10 -1.84 5.88 -104.92 -0.62 -2.45 16 7 C 0.45 10.33 7.83 34.46 0.27 10.60 16 8 O -0.54 -13.89 15.60 -19.30 -0.30 -14.19 16 9 O -0.24 -6.14 7.82 -21.77 -0.17 -6.31 16 10 C -0.37 -10.73 10.11 30.94 0.31 -10.41 16 11 H 0.11 3.53 7.09 -52.48 -0.37 3.16 16 12 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 13 N -0.87 -24.86 13.96 55.49 0.77 -24.08 16 14 Si 0.90 20.34 28.62 -169.99 -4.86 15.47 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 18 C -0.04 -0.61 9.59 -39.27 -0.38 -0.99 16 19 C -0.15 -1.71 10.05 -39.33 -0.40 -2.10 16 20 C 0.15 1.78 7.11 -83.66 -0.59 1.18 16 21 N -0.66 -6.85 5.85 -9.66 -0.06 -6.91 16 22 C 0.54 6.52 7.37 -10.84 -0.08 6.44 16 23 O -0.50 -7.32 18.03 5.57 0.10 -7.22 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.14 2.08 7.66 -52.48 -0.40 1.68 16 31 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.15 2.14 7.61 -52.49 -0.40 1.74 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.41 3.25 8.96 -40.82 -0.37 2.89 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -32.45 304.04 -5.56 -38.01 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.63 Total: 2.14 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.99 Total: -1.50 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.72 Total: -30.99 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.37 Total: -27.72 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.86 Total: 15.47 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.45 -5.56 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768696587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.625 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds