Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.47091 * 2 1 4 4 C 1.51178 * 110.52507 * 122.63974 * 2 1 3 5 5 C 1.37200 * 132.74629 * 298.65069 * 4 2 1 6 6 C 1.39950 * 119.79332 * 179.97438 * 5 4 2 7 7 C 1.47402 * 120.24913 * 180.02562 * 6 5 4 8 8 O 1.21543 * 120.00130 * 0.02562 * 7 6 5 9 9 O 1.34768 * 119.99676 * 179.72449 * 7 6 5 10 10 C 1.34864 * 117.00017 * 180.27342 * 9 7 6 11 11 H 1.08003 * 119.99714 * 0.02562 * 10 9 7 12 12 C 1.38800 * 120.00257 * 179.97438 * 10 9 7 13 13 N 1.31423 * 119.99512 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 119.99822 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47399 * 89.99842 * 14 12 10 16 16 H 1.48507 * 109.46744 * 209.99777 * 14 12 10 17 17 H 1.48501 * 109.47357 * 329.99533 * 14 12 10 18 18 C 1.39859 * 119.50176 * 0.27648 * 6 5 4 19 19 C 1.37440 * 120.21910 * 359.46369 * 18 6 5 20 20 C 1.39227 * 106.28215 * 118.62284 * 4 2 1 21 21 N 1.39081 * 110.20667 * 0.02562 * 20 4 2 22 22 C 1.34333 * 112.38598 * 0.02562 * 21 20 4 23 23 O 1.21269 * 126.43137 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47220 * 297.36126 * 1 2 3 25 25 H 1.09003 * 109.46570 * 57.35921 * 1 2 3 26 26 H 1.09000 * 109.46970 * 177.35577 * 1 2 3 27 27 H 1.08998 * 109.47328 * 182.64078 * 3 2 1 28 28 H 1.08997 * 109.47358 * 302.63935 * 3 2 1 29 29 H 1.09001 * 109.47387 * 62.64038 * 3 2 1 30 30 H 1.08004 * 120.10356 * 359.94925 * 5 4 2 31 31 H 0.97002 * 119.99473 * 180.02562 * 13 12 10 32 32 H 1.07997 * 119.89420 * 179.71980 * 18 6 5 33 33 H 1.08008 * 119.83169 * 180.30224 * 19 18 6 34 34 H 0.97000 * 123.80720 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4334 0.0000 4 6 2.0601 -0.7636 1.1922 5 6 1.9342 -0.5808 2.5461 6 6 2.5528 -1.4734 3.4289 7 6 2.4236 -1.2869 4.8853 8 8 1.7776 -0.3554 5.3238 9 8 3.0168 -2.1527 5.7307 10 6 2.8547 -1.9280 7.0506 11 1 2.2701 -1.0845 7.3869 12 6 3.4383 -2.7814 7.9767 13 7 3.2806 -2.5621 9.2629 14 14 4.4488 -4.2407 7.3949 15 1 5.8688 -3.8322 7.2474 16 1 4.3504 -5.3390 8.3897 17 1 3.9305 -4.7112 6.0853 18 6 3.2988 -2.5407 2.9187 19 6 3.4140 -2.7175 1.5606 20 6 2.7965 -1.8276 0.6783 21 7 2.7760 -1.7989 -0.7120 22 6 2.0620 -0.7671 -1.1920 23 8 1.8770 -0.5011 -2.3605 24 1 -0.3633 0.4723 0.9127 25 1 -0.3632 0.5543 -0.8654 26 1 -0.3633 -1.0266 -0.0474 27 1 3.1539 1.4148 -0.0473 28 1 1.6729 1.9676 -0.8653 29 1 1.7497 1.9390 0.9127 30 1 1.3598 0.2496 2.9296 31 1 3.6888 -3.1583 9.9101 32 1 3.7826 -3.2307 3.5941 33 1 3.9876 -3.5467 1.1734 34 1 3.2270 -2.4500 -1.2720 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768696587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = -103.174947 kcal Electronic energy + Delta-G solvation = -20596.007085 eV Core-core repulsion = 17265.393126 eV Total energy + Delta-G solvation = -3330.613959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.94702 -41.19539 -39.46331 -37.51133 -36.72188 -35.76806 -34.49838 -31.52230 -30.77835 -28.37565 -27.72115 -26.13322 -24.85983 -22.77215 -21.89244 -20.75382 -20.15708 -19.07693 -18.77240 -17.65844 -17.31746 -16.82540 -16.63905 -16.32725 -15.82480 -15.47090 -15.20373 -14.88589 -14.57812 -14.37550 -14.21056 -13.92471 -13.81707 -13.38013 -13.31657 -13.07667 -12.95569 -12.43381 -12.37268 -12.27981 -11.94591 -11.86131 -11.72010 -11.28571 -11.09764 -10.82547 -10.04857 -9.24738 -8.54270 -6.39287 -0.43872 0.23549 1.09521 1.36823 1.41533 1.57476 1.78173 1.82095 2.25697 2.32903 2.68019 2.93826 2.99405 3.15197 3.66164 3.86165 3.96076 4.07996 4.15038 4.20518 4.49333 4.67795 4.68181 4.72508 4.76796 4.92530 4.98258 5.05902 5.15211 5.18822 5.31837 5.36389 5.49725 5.65463 5.79613 5.90081 6.51498 6.81091 6.81235 7.56245 8.58400 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.034447 B = 0.004422 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.642823 B = 6329.920883 C = 6954.754513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.145 4.145 5 C -0.005 4.005 6 C -0.140 4.140 7 C 0.453 3.547 8 O -0.575 6.575 9 O -0.246 6.246 10 C -0.406 4.406 11 H 0.057 0.943 12 C 0.016 3.984 13 N -0.915 5.915 14 Si 0.982 3.018 15 H -0.258 1.258 16 H -0.268 1.268 17 H -0.240 1.240 18 C -0.036 4.036 19 C -0.128 4.128 20 C 0.171 3.829 21 N -0.642 5.642 22 C 0.540 3.460 23 O -0.523 6.523 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.290 0.710 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -1.719 -21.564 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.148 4.148 5 C -0.024 4.024 6 C -0.142 4.142 7 C 0.303 3.697 8 O -0.473 6.473 9 O -0.154 6.154 10 C -0.482 4.482 11 H 0.075 0.925 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.800 3.200 15 H -0.182 1.182 16 H -0.193 1.193 17 H -0.163 1.163 18 C -0.055 4.055 19 C -0.148 4.148 20 C 0.073 3.927 21 N -0.285 5.285 22 C 0.328 3.672 23 O -0.399 6.399 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.192 0.808 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.924 -1.303 -21.908 21.966 hybrid contribution 0.290 -0.387 0.600 0.771 sum 1.215 -1.690 -21.307 21.409 Atomic orbital electron populations 1.21706 0.89247 1.03178 1.04345 1.20190 0.99200 0.97178 0.88943 1.21704 1.01282 0.91146 1.04344 1.19572 1.03608 0.98631 0.92994 1.20097 0.95127 0.96985 0.90221 1.18938 1.06577 1.01138 0.87526 1.21474 0.78782 0.80916 0.88550 1.90656 1.42915 1.33947 1.79748 1.83523 1.64671 1.49726 1.17525 1.20345 1.35362 1.14513 0.77957 0.92524 1.25622 0.97600 1.01496 0.93725 1.69699 1.43992 1.39994 1.01769 0.85104 0.78622 0.76429 0.79801 1.18225 1.19268 1.16296 1.21339 0.93738 0.94723 0.95691 1.20536 1.03084 1.00885 0.90308 1.18416 0.95775 0.95438 0.83108 1.43499 1.50359 1.29443 1.05242 1.20656 0.76780 0.80384 0.89410 1.90777 1.59719 1.70418 1.18942 0.89964 0.90171 0.92181 0.92169 0.90176 0.89965 0.84765 0.89991 0.83404 0.80830 0.73065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.64 71.98 0.62 -1.61 16 2 C -0.05 -1.02 1.01 -53.30 -0.05 -1.07 16 3 C -0.13 -2.23 8.64 71.98 0.62 -1.61 16 4 C -0.15 -3.31 4.98 -19.72 -0.10 -3.41 16 5 C -0.01 -0.16 9.58 22.44 0.22 0.06 16 6 C -0.14 -4.81 5.88 -20.06 -0.12 -4.93 16 7 C 0.45 21.73 7.83 70.24 0.55 22.28 16 8 O -0.58 -31.66 15.60 19.70 0.31 -31.35 16 9 O -0.25 -12.81 7.82 10.87 0.09 -12.72 16 10 C -0.41 -24.67 10.11 67.95 0.69 -23.99 16 11 H 0.06 3.94 7.09 -2.91 -0.02 3.92 16 12 C 0.02 0.90 5.49 84.89 0.47 1.36 16 13 N -0.92 -54.55 13.96 21.63 0.30 -54.25 16 14 Si 0.98 41.50 28.62 68.60 1.96 43.46 16 15 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.24 -9.33 7.11 99.48 0.71 -8.62 16 18 C -0.04 -0.96 9.59 22.47 0.22 -0.75 16 19 C -0.13 -2.38 10.05 22.44 0.23 -2.15 16 20 C 0.17 3.34 7.11 38.58 0.27 3.62 16 21 N -0.64 -10.65 5.85 -303.10 -1.77 -12.43 16 22 C 0.54 11.33 7.37 87.95 0.65 11.98 16 23 O -0.52 -13.74 18.03 -2.99 -0.05 -13.79 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 4.02 7.66 -2.91 -0.02 4.00 16 31 H 0.29 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.15 3.92 7.61 -2.91 -0.02 3.90 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.43 4.68 8.96 -92.71 -0.83 3.85 16 Total: -1.00 -75.33 304.04 5.40 -69.93 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.31 Total: 11.36 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 4.26 Total: -0.22 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -1.47 Total: -66.67 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: 0.34 Total: -57.87 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.96 Total: 43.46 kcal Total: -75.33 5.40 -69.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768696587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.242 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds