Wall clock time and date at job start Mon Mar 30 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99566 * 2 1 4 4 H 1.48496 * 109.46619 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47030 * 299.99635 * 3 2 1 6 6 H 1.48496 * 109.47061 * 59.99822 * 3 2 1 7 7 C 1.39929 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 197.74043 * 7 2 1 9 9 C 1.41444 * 120.00117 * 17.74609 * 7 2 1 10 10 C 1.40782 * 120.17951 * 204.35082 * 9 7 2 11 11 C 1.37712 * 120.05780 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41411 * 359.95305 * 11 10 9 13 13 C 1.39926 * 120.35330 * 0.02570 * 12 11 10 14 14 C 1.47763 * 120.03048 * 179.97438 * 13 12 11 15 15 O 1.21467 * 120.00181 * 180.02562 * 14 13 12 16 16 O 1.34702 * 120.00034 * 0.02562 * 14 13 12 17 17 C 1.45205 * 116.99965 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.43451 * 29.29898 * 17 16 14 19 19 C 1.54627 * 110.48358 * 151.84119 * 17 16 14 20 20 C 1.54483 * 101.76800 * 94.01403 * 19 17 16 21 21 N 1.46767 * 105.47154 * 25.41327 * 20 19 17 22 22 C 1.34418 * 111.29952 * 342.98424 * 21 20 19 23 23 O 1.21288 * 124.94226 * 180.44605 * 22 21 20 24 24 C 1.39095 * 119.93905 * 0.27226 * 13 12 11 25 25 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.97158 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.79605 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.82235 * 179.97438 * 12 11 10 29 29 H 1.09002 * 110.96479 * 212.13076 * 19 17 16 30 30 H 1.08992 * 110.97424 * 335.88978 * 19 17 16 31 31 H 1.09000 * 110.24737 * 144.41289 * 20 19 17 32 32 H 1.09000 * 110.24241 * 266.32399 * 20 19 17 33 33 H 0.96999 * 124.35009 * 162.98907 * 21 20 19 34 34 H 1.07997 * 120.20514 * 179.69817 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8833 2.3965 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0494 -1.2339 0.2855 9 6 1.3513 -2.4078 -0.3723 10 6 1.8276 -3.6499 0.0884 11 6 1.1867 -4.8128 -0.2766 12 6 0.0722 -4.7711 -1.0956 13 6 -0.4163 -3.5460 -1.5630 14 6 -1.6067 -3.5097 -2.4377 15 8 -2.0300 -2.4459 -2.8435 16 8 -2.2224 -4.6562 -2.7850 17 6 -3.3862 -4.5448 -3.6462 18 1 -3.3036 -3.6660 -4.2857 19 6 -3.5510 -5.8227 -4.5011 20 6 -4.5287 -6.6534 -3.6406 21 7 -5.2756 -5.6748 -2.8415 22 6 -4.6538 -4.4833 -2.8228 23 8 -5.0508 -3.5017 -2.2312 24 6 0.2234 -2.3628 -1.2085 25 1 -0.4850 0.8400 -0.0004 26 1 2.6965 -3.6908 0.7285 27 1 1.5560 -5.7635 0.0789 28 1 -0.4228 -5.6890 -1.3762 29 1 -3.9879 -5.5887 -5.4720 30 1 -2.5985 -6.3394 -4.6181 31 1 -5.2090 -7.2164 -4.2798 32 1 -3.9761 -7.3309 -2.9897 33 1 -6.1106 -5.8637 -2.3855 34 1 -0.1470 -1.4152 -1.5708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769987491.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:42 Heat of formation + Delta-G solvation = -122.530527 kcal Electronic energy + Delta-G solvation = -20601.228488 eV Core-core repulsion = 17269.775208 eV Total energy + Delta-G solvation = -3331.453280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10963 -40.72789 -39.13880 -37.85954 -37.00930 -35.63979 -32.48830 -31.64458 -31.35495 -28.45749 -27.28914 -25.19488 -22.97418 -22.87860 -22.05800 -21.44883 -19.79164 -18.64130 -18.51023 -17.80849 -17.32766 -16.83648 -16.51259 -16.34443 -15.90647 -15.19684 -15.14422 -14.92996 -14.77192 -14.40703 -14.14635 -13.70048 -13.56454 -13.08503 -12.91436 -12.82352 -12.58910 -12.57123 -12.30519 -12.18356 -12.08058 -11.55986 -11.34180 -11.12527 -10.95830 -10.20191 -9.64683 -9.46716 -8.70576 -6.42400 0.08187 0.87920 0.94431 1.36157 1.43585 1.53343 1.73881 1.87319 2.17581 2.26431 2.69879 3.16100 3.34545 3.61026 3.72958 3.90441 4.10950 4.36576 4.44728 4.60862 4.74620 4.79747 4.91170 5.00683 5.04742 5.11547 5.20278 5.25269 5.41703 5.66756 5.79440 5.84015 5.86322 5.99127 6.20882 6.50932 6.71768 6.83483 6.87330 7.02733 8.26947 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.004703 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.470105 B = 5952.461616 C = 6665.448209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.493 4.493 8 H 0.091 0.909 9 C 0.066 3.934 10 C -0.201 4.201 11 C -0.097 4.097 12 C -0.179 4.179 13 C -0.129 4.129 14 C 0.509 3.491 15 O -0.538 6.538 16 O -0.322 6.322 17 C 0.036 3.964 18 H 0.099 0.901 19 C -0.115 4.115 20 C 0.098 3.902 21 N -0.705 5.705 22 C 0.492 3.508 23 O -0.576 6.576 24 C -0.127 4.127 25 H 0.287 0.713 26 H 0.118 0.882 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.423 0.577 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -15.072 -8.469 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.169 1.169 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.522 4.522 8 H 0.109 0.891 9 C 0.064 3.936 10 C -0.221 4.221 11 C -0.115 4.115 12 C -0.198 4.198 13 C -0.130 4.130 14 C 0.357 3.643 15 O -0.429 6.429 16 O -0.238 6.238 17 C -0.023 4.023 18 H 0.116 0.884 19 C -0.152 4.152 20 C -0.024 4.024 21 N -0.362 5.362 22 C 0.277 3.723 23 O -0.455 6.455 24 C -0.147 4.147 25 H 0.097 0.903 26 H 0.136 0.864 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.110 0.890 33 H 0.263 0.737 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.921 -14.127 -8.348 17.445 hybrid contribution -0.488 1.428 0.369 1.553 sum -6.409 -12.699 -7.979 16.310 Atomic orbital electron populations 1.69900 1.09509 1.30725 1.35519 1.26926 0.95318 1.05267 0.91160 0.85111 0.79815 0.75830 0.78704 1.16924 1.19625 1.19020 1.19920 0.98756 0.91882 1.41651 0.89119 1.17904 0.91524 0.94282 0.89905 1.21532 1.03548 0.92446 1.04568 1.20994 0.95068 0.98168 0.97248 1.20984 0.99757 0.95178 1.03862 1.19063 0.95003 0.96465 1.02454 1.21922 0.82915 0.81531 0.77940 1.90773 1.65750 1.32428 1.53949 1.86670 1.40268 1.33815 1.63064 1.23721 0.81655 1.04957 0.91966 0.88352 1.22974 1.03278 0.91026 0.97944 1.22523 0.95009 0.90621 0.94271 1.46156 1.26598 1.10888 1.52533 1.21415 0.86605 0.83470 0.80857 1.90777 1.71074 1.36898 1.46718 1.21479 0.98374 0.95785 0.99062 0.90279 0.86404 0.83638 0.84429 0.85108 0.85646 0.85127 0.88989 0.73669 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.61 10.96 21.82 0.24 -47.37 16 2 C 0.03 1.47 5.14 85.25 0.44 1.91 16 3 Si 0.99 39.87 29.60 68.60 2.03 41.90 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.49 -26.73 9.05 23.47 0.21 -26.52 16 8 H 0.09 4.57 7.91 -2.91 -0.02 4.55 16 9 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 10 C -0.20 -9.29 9.78 22.77 0.22 -9.07 16 11 C -0.10 -3.86 10.01 22.18 0.22 -3.64 16 12 C -0.18 -7.45 9.62 22.71 0.22 -7.23 16 13 C -0.13 -6.43 5.87 -20.14 -0.12 -6.55 16 14 C 0.51 24.43 7.90 70.34 0.56 24.98 16 15 O -0.54 -29.50 15.61 19.94 0.31 -29.19 16 16 O -0.32 -11.88 9.19 -56.12 -0.52 -12.40 16 17 C 0.04 1.07 3.25 30.59 0.10 1.17 16 18 H 0.10 3.28 7.20 -2.39 -0.02 3.26 16 19 C -0.12 -1.57 6.92 31.65 0.22 -1.35 16 20 C 0.10 1.01 7.78 86.83 0.68 1.69 16 21 N -0.71 -13.83 6.24 -459.79 -2.87 -16.70 16 22 C 0.49 16.24 8.13 87.90 0.71 16.96 16 23 O -0.58 -26.26 18.03 -3.05 -0.06 -26.31 16 24 C -0.13 -7.23 8.24 23.02 0.19 -7.04 16 25 H 0.29 15.20 8.30 -92.71 -0.77 14.43 16 26 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 27 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.14 4.74 7.59 -2.91 -0.02 4.72 16 29 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.13 1.36 8.11 -2.39 -0.02 1.34 16 31 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 6.60 8.96 -92.71 -0.83 5.77 16 34 H 0.10 6.38 5.74 -2.91 -0.02 6.36 16 Total: -1.00 -80.87 302.55 2.99 -77.88 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.32 Total: 23.42 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 3.53 Total: -11.22 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -2.63 Total: -64.07 kcal Atomic # 8 Polarization: -67.64 SS G_CDS: -0.26 Total: -67.90 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -80.87 2.99 -77.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769987491.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.649 kcal (2) G-P(sol) polarization free energy of solvation -80.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds