Wall clock time and date at job start Mon Mar 30 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29874 * 124.83278 * 2 1 4 4 C 1.36134 * 108.76556 * 179.97438 * 3 2 1 5 5 C 1.39245 * 133.76172 * 179.97438 * 4 3 2 6 6 C 1.39248 * 119.46464 * 180.02562 * 5 4 3 7 7 C 1.47589 * 119.95537 * 180.02562 * 6 5 4 8 8 O 1.21485 * 120.00508 * 359.97438 * 7 6 5 9 9 O 1.34731 * 119.99738 * 179.97438 * 7 6 5 10 10 C 1.45206 * 116.99944 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46781 * 179.97438 * 11 10 9 13 13 H 1.07990 * 120.00248 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99683 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99997 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47068 * 60.00353 * 16 14 12 18 18 H 1.48503 * 109.47364 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47262 * 300.00619 * 16 14 12 20 20 C 1.40094 * 120.08537 * 0.02562 * 6 5 4 21 21 C 1.36515 * 120.46769 * 359.97438 * 20 6 5 22 22 C 1.38911 * 120.19797 * 359.97438 * 21 20 6 23 23 O 1.34253 * 124.83777 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47035 * 90.00268 * 1 2 3 25 25 H 1.09008 * 109.47001 * 209.99858 * 1 2 3 26 26 H 1.08994 * 109.47215 * 329.99706 * 1 2 3 27 27 H 1.08010 * 120.26593 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.46868 * 299.99689 * 10 9 7 29 29 H 1.09000 * 109.47047 * 60.00155 * 10 9 7 30 30 H 1.09000 * 109.46842 * 300.00054 * 11 10 9 31 31 H 1.09000 * 109.47046 * 60.00212 * 11 10 9 32 32 H 0.97003 * 120.00273 * 179.97438 * 15 14 12 33 33 H 1.07998 * 119.77055 * 180.27440 * 20 6 5 34 34 H 1.07995 * 119.89879 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6893 0.0006 5 6 4.7607 1.3891 0.0004 6 6 5.9622 0.6852 0.0006 7 6 7.2445 1.4160 0.0010 8 8 7.2513 2.6308 0.0006 9 8 8.4075 0.7358 0.0017 10 6 9.6297 1.5198 0.0015 11 6 10.8378 0.5809 0.0031 12 6 12.1062 1.3946 0.0022 13 1 12.0558 2.4734 0.0011 14 6 13.3312 0.7618 0.0039 15 7 13.3926 -0.5519 0.0058 16 14 14.9035 1.7703 0.0035 17 1 14.9414 2.6284 1.2149 18 1 16.0761 0.8591 0.0049 19 1 14.9430 2.6252 -1.2101 20 6 5.9554 -0.7157 0.0005 21 6 4.7754 -1.4022 0.0007 22 6 3.5677 -0.7158 0.0015 23 8 2.2739 -1.1019 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 4.7625 2.4692 -0.0008 28 1 9.6583 2.1478 -0.8889 29 1 9.6579 2.1490 0.8911 30 1 10.8089 -0.0468 0.8937 31 1 10.8098 -0.0487 -0.8863 32 1 14.2544 -0.9972 0.0066 33 1 6.8902 -1.2565 0.0052 34 1 4.7809 -2.4821 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795684153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:22 Heat of formation + Delta-G solvation = -58.100862 kcal Electronic energy + Delta-G solvation = -19545.647695 eV Core-core repulsion = 16216.988295 eV Total energy + Delta-G solvation = -3328.659400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.58691 -40.12888 -38.03186 -36.10309 -35.20798 -33.37449 -32.11306 -31.16857 -30.28518 -28.54765 -25.47286 -24.23257 -22.69564 -21.91149 -21.46624 -20.75097 -18.55082 -17.80113 -17.20257 -16.73520 -16.36307 -15.96540 -15.95472 -14.81409 -14.51144 -14.41101 -14.10838 -13.75858 -13.44014 -13.31245 -13.19326 -12.72167 -12.55410 -12.36642 -11.85076 -11.59725 -11.25814 -11.09247 -10.80892 -10.76454 -10.72679 -10.37543 -9.69058 -9.66976 -9.33897 -9.12290 -8.79393 -8.45567 -6.12007 -4.16409 0.39396 0.48093 2.05241 2.10561 2.60582 2.90858 3.29613 3.33604 3.36692 3.52923 3.53933 4.14942 4.37413 4.55905 4.69314 4.76028 4.82546 4.87319 5.05081 5.10004 5.24710 5.26035 5.54299 5.71373 5.86201 5.93231 6.01843 6.06210 6.06544 6.22753 6.60276 6.87348 7.25357 7.52549 7.59601 7.83998 8.10153 8.22191 8.88816 9.48059 10.99437 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.058351 B = 0.002819 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.735922 B = 9928.571849 C =10382.559409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.243 3.757 3 N -0.472 5.472 4 C 0.007 3.993 5 C 0.006 3.994 6 C -0.116 4.116 7 C 0.505 3.495 8 O -0.510 6.510 9 O -0.350 6.350 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.038 4.038 21 C -0.103 4.103 22 C 0.034 3.966 23 O -0.212 6.212 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.152 0.848 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.162 0.838 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.600 -3.126 -0.004 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 N -0.202 5.202 4 C -0.104 4.104 5 C -0.012 4.012 6 C -0.118 4.118 7 C 0.349 3.651 8 O -0.400 6.400 9 O -0.266 6.266 10 C 0.003 3.997 11 C -0.012 4.012 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.017 4.017 23 O -0.104 6.104 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.170 0.830 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.180 0.820 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.621 -2.306 -0.003 24.729 hybrid contribution 1.195 -0.068 -0.009 1.197 sum -23.426 -2.374 -0.011 23.546 Atomic orbital electron populations 1.20427 0.80670 1.05676 1.05274 1.26510 0.96694 0.78129 0.95535 1.70642 1.00668 1.28918 1.19944 1.19600 0.91989 0.91198 1.07622 1.20382 0.87200 1.01152 0.92510 1.19069 0.90869 0.93708 1.08163 1.20781 0.84998 0.85888 0.73446 1.90819 1.88461 1.14748 1.45970 1.86560 1.15106 1.42342 1.82609 1.23725 0.79508 0.95229 1.01212 1.19176 0.88357 0.94742 0.98935 1.20935 0.90139 0.93123 1.52369 0.92265 1.24977 0.99306 0.95007 0.94828 1.69956 1.25587 1.07638 1.49664 0.86524 0.82093 0.79828 0.78809 1.20050 1.21127 1.20054 1.21178 0.98513 0.92753 0.93180 1.19614 0.86763 1.00889 1.04894 1.20600 0.83895 0.94458 1.02707 1.84481 1.15293 1.36330 1.74321 0.88255 0.88787 0.87572 0.83020 0.92061 0.92067 0.95271 0.95272 0.92632 0.82030 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.24 2.38 8.23 -13.11 -0.11 2.27 16 3 N -0.47 -6.02 11.34 -8.72 -0.10 -6.12 16 4 C 0.01 0.09 7.23 -84.73 -0.61 -0.52 16 5 C 0.01 0.09 9.64 -38.83 -0.37 -0.28 16 6 C -0.12 -1.67 5.87 -105.01 -0.62 -2.29 16 7 C 0.50 9.03 7.89 34.55 0.27 9.30 16 8 O -0.51 -10.26 16.12 -19.25 -0.31 -10.57 16 9 O -0.35 -6.82 9.45 -40.58 -0.38 -7.21 16 10 C 0.08 1.66 5.41 37.16 0.20 1.86 16 11 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 12 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.04 -0.46 9.54 -39.51 -0.38 -0.84 16 21 C -0.10 -1.10 9.99 -39.95 -0.40 -1.50 16 22 C 0.03 0.42 7.43 -38.48 -0.29 0.13 16 23 O -0.21 -2.34 10.77 3.82 0.04 -2.30 16 24 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16 26 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.15 2.10 7.64 -52.48 -0.40 1.70 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.16 1.80 7.58 -52.49 -0.40 1.40 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -32.91 309.80 -6.57 -39.48 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -3.72 Total: -4.22 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.48 Total: -4.64 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.64 Total: -31.48 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.65 Total: -20.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.91 -6.57 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795684153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.617 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds