Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29874 * 124.83278 * 2 1 4 4 C 1.36134 * 108.76556 * 179.97438 * 3 2 1 5 5 C 1.39245 * 133.76172 * 179.97438 * 4 3 2 6 6 C 1.39248 * 119.46464 * 180.02562 * 5 4 3 7 7 C 1.47589 * 119.95537 * 180.02562 * 6 5 4 8 8 O 1.21485 * 120.00508 * 359.97438 * 7 6 5 9 9 O 1.34731 * 119.99738 * 179.97438 * 7 6 5 10 10 C 1.45206 * 116.99944 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46781 * 179.97438 * 11 10 9 13 13 H 1.07990 * 120.00248 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99683 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99997 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47068 * 60.00353 * 16 14 12 18 18 H 1.48503 * 109.47364 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47262 * 300.00619 * 16 14 12 20 20 C 1.40094 * 120.08537 * 0.02562 * 6 5 4 21 21 C 1.36515 * 120.46769 * 359.97438 * 20 6 5 22 22 C 1.38911 * 120.19797 * 359.97438 * 21 20 6 23 23 O 1.34253 * 124.83777 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47035 * 90.00268 * 1 2 3 25 25 H 1.09008 * 109.47001 * 209.99858 * 1 2 3 26 26 H 1.08994 * 109.47215 * 329.99706 * 1 2 3 27 27 H 1.08010 * 120.26593 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.46868 * 299.99689 * 10 9 7 29 29 H 1.09000 * 109.47047 * 60.00155 * 10 9 7 30 30 H 1.09000 * 109.46842 * 300.00054 * 11 10 9 31 31 H 1.09000 * 109.47046 * 60.00212 * 11 10 9 32 32 H 0.97003 * 120.00273 * 179.97438 * 15 14 12 33 33 H 1.07998 * 119.77055 * 180.27440 * 20 6 5 34 34 H 1.07995 * 119.89879 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6893 0.0006 5 6 4.7607 1.3891 0.0004 6 6 5.9622 0.6852 0.0006 7 6 7.2445 1.4160 0.0010 8 8 7.2513 2.6308 0.0006 9 8 8.4075 0.7358 0.0017 10 6 9.6297 1.5198 0.0015 11 6 10.8378 0.5809 0.0031 12 6 12.1062 1.3946 0.0022 13 1 12.0558 2.4734 0.0011 14 6 13.3312 0.7618 0.0039 15 7 13.3926 -0.5519 0.0058 16 14 14.9035 1.7703 0.0035 17 1 14.9414 2.6284 1.2149 18 1 16.0761 0.8591 0.0049 19 1 14.9430 2.6252 -1.2101 20 6 5.9554 -0.7157 0.0005 21 6 4.7754 -1.4022 0.0007 22 6 3.5677 -0.7158 0.0015 23 8 2.2739 -1.1019 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 4.7625 2.4692 -0.0008 28 1 9.6583 2.1478 -0.8889 29 1 9.6579 2.1490 0.8911 30 1 10.8089 -0.0468 0.8937 31 1 10.8098 -0.0487 -0.8863 32 1 14.2544 -0.9972 0.0066 33 1 6.8902 -1.2565 0.0052 34 1 4.7809 -2.4821 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795684153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = -79.605641 kcal Electronic energy + Delta-G solvation = -19546.580212 eV Core-core repulsion = 16216.988295 eV Total energy + Delta-G solvation = -3329.591917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.46595 -41.58722 -39.12632 -37.68157 -36.08517 -35.44522 -32.95655 -32.29850 -32.00970 -29.40072 -27.22346 -25.59521 -23.64452 -23.08903 -22.74248 -22.33262 -19.80010 -18.83701 -18.48881 -18.06636 -17.84605 -17.56258 -17.26762 -16.52299 -15.82769 -15.33883 -15.19480 -14.86886 -14.56971 -14.36310 -14.12139 -14.10795 -13.63648 -13.44807 -13.14166 -13.08963 -12.76370 -12.59612 -12.59125 -12.41385 -11.99889 -11.68841 -11.57817 -11.50477 -11.41690 -10.59807 -10.14281 -9.71155 -8.26329 -6.39049 -0.66519 -0.45271 1.15050 1.28148 1.37246 1.40949 1.45157 1.50219 1.56763 2.40002 2.43711 2.73659 3.08278 3.21446 3.47233 3.73435 3.83063 4.00265 4.08413 4.22584 4.25253 4.52781 4.59948 4.63622 4.69383 4.71578 4.85922 4.95495 5.01253 5.20590 5.21756 5.30666 5.47032 5.48366 5.73723 6.07310 6.39931 6.58207 6.74197 7.30389 8.85917 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.058351 B = 0.002819 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.735922 B = 9928.571849 C =10382.559409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.260 3.740 3 N -0.511 5.511 4 C -0.009 4.009 5 C -0.002 4.002 6 C -0.126 4.126 7 C 0.507 3.493 8 O -0.537 6.537 9 O -0.351 6.351 10 C 0.090 3.910 11 C 0.032 3.968 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.040 4.040 21 C -0.084 4.084 22 C 0.029 3.971 23 O -0.211 6.211 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.171 0.829 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.049 -3.791 -0.024 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.048 3.952 3 N -0.241 5.241 4 C -0.119 4.119 5 C -0.021 4.021 6 C -0.129 4.129 7 C 0.354 3.646 8 O -0.429 6.429 9 O -0.267 6.267 10 C 0.017 3.983 11 C -0.005 4.005 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.564 5.564 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.059 4.059 21 C -0.102 4.102 22 C -0.022 4.022 23 O -0.103 6.103 24 H 0.139 0.861 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.161 0.839 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.096 -2.967 -0.022 26.264 hybrid contribution 1.419 0.076 -0.004 1.421 sum -24.677 -2.891 -0.027 24.846 Atomic orbital electron populations 1.20828 0.76647 1.07432 1.07134 1.27715 0.98367 0.77066 0.92004 1.70671 1.00532 1.30394 1.22502 1.19729 0.92261 0.92087 1.07829 1.20280 0.87581 1.00849 0.93435 1.18866 0.88972 0.94650 1.10376 1.21327 0.85274 0.85799 0.72246 1.90798 1.88682 1.15971 1.47410 1.86537 1.15069 1.42052 1.83063 1.23271 0.79574 0.94188 1.01271 1.18980 0.89827 0.94704 0.97010 1.21344 0.91309 0.93680 1.52600 0.91763 1.25926 1.02959 0.96166 0.94115 1.70074 1.26693 1.09346 1.50298 0.85405 0.77536 0.78290 0.79260 1.19140 1.20471 1.19148 1.21262 0.99655 0.91569 0.93376 1.19910 0.85463 1.02426 1.02413 1.20840 0.84892 0.94004 1.02497 1.84521 1.14746 1.36747 1.74265 0.86058 0.86239 0.86500 0.83914 0.91973 0.91982 0.97152 0.97155 0.92316 0.81158 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.23 0.75 0.44 16 2 C 0.26 4.50 8.23 88.40 0.73 5.23 16 3 N -0.51 -12.61 11.34 -296.34 -3.36 -15.97 16 4 C -0.01 -0.24 7.23 39.27 0.28 0.05 16 5 C 0.00 -0.07 9.64 22.76 0.22 0.15 16 6 C -0.13 -3.70 5.87 -20.12 -0.12 -3.82 16 7 C 0.51 18.60 7.89 70.29 0.55 19.16 16 8 O -0.54 -22.27 16.12 19.89 0.32 -21.95 16 9 O -0.35 -13.97 9.45 -56.41 -0.53 -14.50 16 10 C 0.09 4.03 5.41 71.98 0.39 4.42 16 11 C 0.03 1.69 5.35 29.85 0.16 1.85 16 12 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 13 H 0.06 3.47 7.74 -2.92 -0.02 3.44 16 14 C 0.01 0.43 5.46 84.66 0.46 0.89 16 15 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 16 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C -0.04 -0.94 9.54 22.32 0.21 -0.73 16 21 C -0.08 -1.61 9.99 22.03 0.22 -1.39 16 22 C 0.03 0.66 7.43 22.98 0.17 0.83 16 23 O -0.21 -4.12 10.77 -9.24 -0.10 -4.22 16 24 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 26 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.14 4.21 7.64 -2.91 -0.02 4.19 16 28 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.17 3.64 7.58 -2.91 -0.02 3.61 16 34 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.91 309.80 4.03 -67.88 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.12 Total: 1.58 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.26 Total: -3.76 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -3.08 Total: -70.50 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.31 Total: -40.66 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.91 4.03 -67.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795684153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.721 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds