Wall clock time and date at job start Mon Mar 30 2020 02:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30099 * 124.88244 * 2 1 4 4 C 1.35555 * 108.84202 * 179.97438 * 3 2 1 5 5 C 1.40290 * 106.62839 * 0.02562 * 4 3 2 6 6 C 1.38584 * 119.92520 * 180.02562 * 5 4 3 7 7 C 1.38229 * 120.22831 * 359.97438 * 6 5 4 8 8 C 1.38161 * 120.68482 * 0.02562 * 7 6 5 9 9 C 1.39424 * 120.23196 * 359.97438 * 8 7 6 10 10 C 1.47290 * 120.30271 * 179.97438 * 9 8 7 11 11 O 1.21521 * 120.00450 * 180.02562 * 10 9 8 12 12 O 1.34782 * 120.00052 * 0.02799 * 10 9 8 13 13 C 1.45197 * 117.00089 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46827 * 30.00454 * 13 12 10 15 15 C 1.52998 * 109.47486 * 270.00151 * 13 12 10 16 16 C 1.50697 * 109.47087 * 149.99812 * 13 12 10 17 17 H 1.08008 * 119.99823 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00188 * 180.02562 * 16 13 12 19 19 N 1.31517 * 120.00129 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00141 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47428 * 59.99609 * 20 18 16 22 22 H 1.48499 * 109.47485 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47077 * 299.99710 * 20 18 16 24 24 O 1.34127 * 124.88292 * 179.97438 * 2 1 3 25 25 H 1.08992 * 109.47062 * 89.99616 * 1 2 3 26 26 H 1.09003 * 109.46724 * 209.99469 * 1 2 3 27 27 H 1.08995 * 109.47035 * 329.99319 * 1 2 3 28 28 H 1.08001 * 119.88526 * 179.97438 * 6 5 4 29 29 H 1.08003 * 119.65538 * 180.02562 * 7 6 5 30 30 H 1.07997 * 119.88117 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47335 * 299.99992 * 15 13 12 32 32 H 1.09006 * 109.47075 * 60.00070 * 15 13 12 33 33 H 1.08999 * 109.46904 * 179.97438 * 15 13 12 34 34 H 0.96999 * 119.99698 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2511 1.0672 0.0000 4 6 3.5539 0.6927 0.0006 5 6 3.5682 -0.7101 0.0003 6 6 4.7764 -1.3891 0.0013 7 6 5.9682 -0.6889 0.0021 8 6 5.9742 0.6927 0.0023 9 6 4.7727 1.3999 0.0013 10 6 4.7773 2.8728 0.0021 11 8 3.7269 3.4838 0.0017 12 8 5.9466 3.5431 0.0033 13 6 5.8752 4.9933 0.0035 14 1 4.9680 5.3123 0.5166 15 6 5.8514 5.5030 -1.4389 16 6 7.0788 5.5554 0.7151 17 1 7.8232 4.8893 1.1258 18 6 7.2297 6.9200 0.8419 19 7 6.3230 7.7311 0.3423 20 14 8.7220 7.6168 1.7234 21 1 9.9577 7.1827 1.0236 22 1 8.6490 9.1000 1.7238 23 1 8.7460 7.1216 3.1233 24 8 2.2741 -1.1003 0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 4.7867 -2.4691 0.0016 29 1 6.9044 -1.2275 0.0024 30 1 6.9130 1.2266 0.0033 31 1 6.7586 5.1840 -1.9521 32 1 4.9807 5.0964 -1.9536 33 1 5.7973 6.5916 -1.4387 34 1 6.4294 8.6911 0.4312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805881460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:34 Heat of formation + Delta-G solvation = -72.970204 kcal Electronic energy + Delta-G solvation = -20512.615237 eV Core-core repulsion = 17183.311054 eV Total energy + Delta-G solvation = -3329.304183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.41511 -41.26907 -38.97206 -37.52726 -35.96533 -35.34352 -32.66798 -32.48875 -31.36673 -29.16140 -27.48966 -25.58971 -24.38618 -23.09339 -22.84549 -21.41599 -19.42866 -18.99059 -18.29579 -18.09180 -18.03714 -17.15338 -16.77144 -16.40471 -16.14196 -15.05014 -14.93640 -14.74804 -14.36531 -14.14768 -14.03223 -13.63535 -13.50434 -13.18564 -13.12968 -13.00945 -12.93310 -12.82316 -12.40956 -12.35088 -12.17063 -11.78428 -11.61706 -11.27028 -11.02285 -10.61280 -10.01259 -9.61415 -8.29273 -6.47318 -0.84627 -0.02005 1.24780 1.36999 1.41509 1.46703 1.53265 1.54866 1.85982 2.40012 2.57616 2.76047 3.01283 3.41653 3.70588 3.79704 4.00761 4.04075 4.25694 4.47205 4.57427 4.59258 4.68835 4.71971 4.74960 4.81088 4.89096 5.07092 5.13027 5.14705 5.21805 5.45194 5.54000 5.57263 5.86321 6.02110 6.52402 6.57975 6.90872 7.24222 8.78896 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.004317 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.112598 B = 6485.012466 C = 7142.685032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.257 3.743 3 N -0.524 5.524 4 C 0.043 3.957 5 C -0.021 4.021 6 C -0.037 4.037 7 C -0.093 4.093 8 C -0.046 4.046 9 C -0.112 4.112 10 C 0.483 3.517 11 O -0.535 6.535 12 O -0.353 6.353 13 C 0.219 3.781 14 H 0.001 0.999 15 C -0.140 4.140 16 C -0.548 4.548 17 H 0.073 0.927 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.268 1.268 24 O -0.208 6.208 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.189 0.811 29 H 0.203 0.797 30 H 0.160 0.840 31 H 0.050 0.950 32 H 0.016 0.984 33 H 0.083 0.917 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 -22.226 -1.035 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.047 3.953 3 N -0.254 5.254 4 C -0.070 4.070 5 C -0.071 4.071 6 C -0.055 4.055 7 C -0.110 4.110 8 C -0.066 4.066 9 C -0.114 4.114 10 C 0.329 3.671 11 O -0.427 6.427 12 O -0.270 6.270 13 C 0.165 3.835 14 H 0.019 0.981 15 C -0.198 4.198 16 C -0.586 4.586 17 H 0.091 0.909 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.811 3.189 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.193 1.193 24 O -0.100 6.100 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.124 0.876 28 H 0.206 0.794 29 H 0.220 0.780 30 H 0.178 0.822 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.769 -21.190 -1.064 21.746 hybrid contribution 0.282 0.727 0.276 0.827 sum -4.488 -20.463 -0.789 20.964 Atomic orbital electron populations 1.20781 0.76835 1.07179 1.07018 1.27819 0.98489 0.77275 0.91735 1.70774 1.01865 1.30690 1.22047 1.19802 0.91254 0.92682 1.03230 1.20621 0.85510 0.92584 1.08401 1.20752 0.85528 1.02683 0.96512 1.21578 0.99433 0.91857 0.98139 1.21849 0.96235 0.95999 0.92472 1.18594 0.93124 0.88312 1.11393 1.21642 0.82443 0.89921 0.73069 1.90792 1.34154 1.70959 1.46767 1.86508 1.32449 1.25294 1.82717 1.20376 0.97350 0.70777 0.94964 0.98148 1.21977 0.98185 1.03601 0.96033 1.21261 1.06996 0.92570 1.37741 0.90918 1.25913 1.00349 0.96330 0.95903 1.70035 1.36161 1.04208 1.45308 0.85157 0.78081 0.76935 0.78756 1.18407 1.20272 1.19294 1.84479 1.14732 1.36031 1.74738 0.86092 0.85507 0.87585 0.79378 0.78013 0.82235 0.93073 0.96539 0.89875 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.11 16 2 C 0.26 6.91 8.24 88.37 0.73 7.64 16 3 N -0.52 -20.24 10.62 -295.51 -3.14 -23.38 16 4 C 0.04 1.61 6.84 39.72 0.27 1.88 16 5 C -0.02 -0.58 7.42 22.85 0.17 -0.41 16 6 C -0.04 -0.64 10.05 22.35 0.22 -0.41 16 7 C -0.09 -1.56 10.00 22.25 0.22 -1.34 16 8 C -0.05 -1.29 9.60 22.54 0.22 -1.07 16 9 C -0.11 -4.39 5.89 -19.96 -0.12 -4.51 16 10 C 0.48 24.42 7.86 70.20 0.55 24.97 16 11 O -0.54 -31.02 15.33 19.77 0.30 -30.71 16 12 O -0.35 -18.51 9.11 -56.94 -0.52 -19.03 16 13 C 0.22 12.86 2.56 29.85 0.08 12.94 16 14 H 0.00 0.05 7.16 -2.39 -0.02 0.03 16 15 C -0.14 -7.73 9.33 71.98 0.67 -7.06 16 16 C -0.55 -32.15 8.90 25.60 0.23 -31.92 16 17 H 0.07 4.09 7.81 -2.91 -0.02 4.06 16 18 C 0.01 0.82 5.30 84.65 0.45 1.27 16 19 N -0.92 -54.58 11.32 21.45 0.24 -54.34 16 20 Si 0.99 43.52 29.54 68.60 2.03 45.54 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 O -0.21 -5.25 10.77 -9.49 -0.10 -5.35 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.20 1.31 8.06 -2.91 -0.02 1.28 16 30 H 0.16 4.20 7.60 -2.91 -0.02 4.18 16 31 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.83 16 33 H 0.08 4.84 6.07 -2.39 -0.01 4.83 16 34 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -84.63 304.31 4.38 -80.25 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.13 Total: 5.14 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 4.44 Total: 1.89 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -2.90 Total: -77.72 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -0.32 Total: -55.09 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -84.63 4.38 -80.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805881460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.275 kcal (2) G-P(sol) polarization free energy of solvation -84.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds