Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86804 * 120.00351 * 2 1 4 4 H 1.48495 * 109.47064 * 270.00014 * 3 2 1 5 5 H 1.48501 * 109.46686 * 30.00010 * 3 2 1 6 6 H 1.48498 * 109.47234 * 149.99401 * 3 2 1 7 7 C 1.38750 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99811 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00477 * 179.97438 * 9 7 2 11 11 O 1.21211 * 119.99667 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00213 * 179.97438 * 10 9 7 13 13 C 1.50698 * 110.88446 * 303.81175 * 12 10 9 14 14 C 1.38236 * 119.99986 * 349.57342 * 13 12 10 15 15 C 1.38239 * 119.99976 * 179.81394 * 14 13 12 16 16 C 1.38237 * 119.99785 * 0.39310 * 15 14 13 17 17 C 1.38231 * 120.00103 * 359.86132 * 16 15 14 18 18 C 1.38231 * 120.00075 * 359.95231 * 17 16 15 19 19 C 1.54482 * 110.97066 * 67.61968 * 12 10 9 20 20 N 1.46753 * 105.53206 * 143.32541 * 19 12 10 21 21 C 1.34417 * 111.30687 * 343.36584 * 20 19 12 22 22 O 1.21285 * 124.94489 * 180.27030 * 21 20 19 23 23 C 1.51279 * 110.11497 * 0.02562 * 21 20 19 24 24 H 0.97008 * 119.99599 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00121 * 359.97438 * 14 13 12 26 26 H 1.07993 * 120.00336 * 180.22906 * 15 14 13 27 27 H 1.08005 * 119.99974 * 179.83673 * 16 15 14 28 28 H 1.08009 * 120.00189 * 179.97438 * 17 16 15 29 29 H 1.08009 * 120.00037 * 179.97438 * 18 17 16 30 30 H 1.08997 * 110.24615 * 262.53900 * 19 12 10 31 31 H 1.09003 * 110.24071 * 24.44510 * 19 12 10 32 32 H 0.97007 * 124.34919 * 163.21908 * 20 19 12 33 33 H 1.08992 * 110.49294 * 135.17104 * 23 21 20 34 34 H 1.08998 * 110.48121 * 257.68377 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5459 1.4401 0.7001 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4965 0.0005 11 8 3.2754 -3.4331 0.0001 12 6 1.3808 -4.8393 0.0011 13 6 0.4392 -4.9619 1.1714 14 6 0.4593 -4.0136 2.1770 15 6 -0.4071 -4.1241 3.2485 16 6 -1.2879 -5.1872 3.3185 17 6 -1.3043 -6.1383 2.3155 18 6 -0.4406 -6.0258 1.2421 19 6 0.6399 -5.0828 -1.3324 20 7 0.8041 -6.5130 -1.6177 21 6 1.7950 -7.0469 -0.8829 22 8 2.1438 -8.2078 -0.9259 23 6 2.4158 -5.9880 0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 1.1500 -3.1851 2.1242 26 1 -0.3940 -3.3812 4.0323 27 1 -1.9629 -5.2749 4.1570 28 1 -1.9922 -6.9692 2.3704 29 1 -0.4532 -6.7692 0.4586 30 1 -0.4164 -4.8352 -1.2277 31 1 1.0892 -4.4879 -2.1276 32 1 0.2653 -7.0097 -2.2532 33 1 2.5607 -6.3711 1.0113 34 1 3.3637 -5.6496 -0.4171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811237889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -82.592315 kcal Electronic energy + Delta-G solvation = -21457.061804 eV Core-core repulsion = 18127.340375 eV Total energy + Delta-G solvation = -3329.721429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03884 -38.96536 -38.44487 -36.30875 -35.22140 -32.60301 -32.18403 -30.60338 -29.37986 -27.62545 -25.60209 -23.65372 -22.36528 -21.51580 -20.48952 -19.38924 -17.88469 -17.48551 -17.27229 -16.05879 -15.49555 -15.11562 -14.82369 -14.67558 -14.47663 -14.32144 -13.84220 -13.72224 -13.29699 -12.96949 -12.84362 -12.54237 -12.26672 -11.79752 -11.64188 -11.50151 -11.24371 -10.79128 -10.73420 -10.52789 -10.46301 -9.93219 -9.83878 -9.21447 -9.07347 -8.69559 -8.61696 -8.46051 -6.52682 -4.21389 1.54657 1.70332 2.69126 2.97232 3.12556 3.17673 3.25245 3.46595 3.73125 3.98547 4.22426 4.58118 4.69510 4.73341 4.96431 5.09182 5.20666 5.28112 5.44219 5.61450 5.69520 5.75124 5.86655 5.91863 6.04864 6.21701 6.32931 6.52554 6.69703 6.80267 6.83484 6.89626 7.02149 7.25070 7.28642 7.80577 8.30550 8.52403 8.95537 9.68103 10.63706 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.006779 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.582534 B = 4129.284384 C = 5124.042112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.388 4.388 8 H 0.097 0.903 9 O -0.199 6.199 10 C 0.410 3.590 11 O -0.544 6.544 12 C -0.013 4.013 13 C -0.071 4.071 14 C -0.083 4.083 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.127 4.127 18 C -0.111 4.111 19 C 0.119 3.881 20 N -0.730 5.730 21 C 0.527 3.473 22 O -0.539 6.539 23 C -0.137 4.137 24 H 0.271 0.729 25 H 0.134 0.866 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.410 0.590 33 H 0.107 0.893 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -7.720 1.973 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.158 4.158 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.464 4.464 8 H 0.115 0.885 9 O -0.105 6.105 10 C 0.255 3.745 11 O -0.441 6.441 12 C -0.015 4.015 13 C -0.071 4.071 14 C -0.100 4.100 15 C -0.134 4.134 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.129 4.129 19 C -0.006 4.006 20 N -0.386 5.386 21 C 0.314 3.686 22 O -0.416 6.416 23 C -0.176 4.176 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.249 0.751 33 H 0.126 0.874 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.582 -8.059 2.035 9.051 hybrid contribution 0.033 0.809 -0.331 0.874 sum -3.549 -7.250 1.704 8.250 Atomic orbital electron populations 1.69993 1.05951 1.27869 1.45415 1.25318 0.95781 0.98806 0.95914 0.85710 0.79155 0.79769 0.78848 1.19819 1.20278 1.19014 1.21265 0.92467 0.79670 1.52948 0.88516 1.83924 1.38951 1.12997 1.74621 1.22176 0.86277 0.86334 0.79719 1.90581 1.15199 1.87469 1.50852 1.19982 0.94589 0.92383 0.94500 1.19270 0.96848 0.96071 0.94934 1.21347 0.98484 0.97576 0.92637 1.21134 0.95920 0.97924 0.98412 1.21125 0.98982 0.94934 0.98762 1.20990 0.99469 0.99368 0.94659 1.20924 0.95924 0.97492 0.98572 1.22119 1.02211 0.80843 0.95377 1.46268 1.37074 1.11298 1.43962 1.20833 0.79294 0.88183 0.80339 1.90730 1.64734 1.17690 1.68476 1.22417 1.00063 0.92814 1.02344 0.91932 0.84813 0.85966 0.86382 0.86355 0.86360 0.88576 0.89745 0.75081 0.87422 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.39 13.67 55.48 0.76 -22.63 16 2 C 0.05 1.24 5.49 -17.53 -0.10 1.14 16 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.57 9.64 30.92 0.30 -10.27 16 8 H 0.10 2.68 6.86 -52.48 -0.36 2.32 16 9 O -0.20 -5.11 8.32 -20.70 -0.17 -5.28 16 10 C 0.41 9.22 5.21 36.01 0.19 9.41 16 11 O -0.54 -13.45 14.75 -19.05 -0.28 -13.73 16 12 C -0.01 -0.22 0.86 -155.18 -0.13 -0.36 16 13 C -0.07 -1.21 4.66 -104.62 -0.49 -1.70 16 14 C -0.08 -1.51 8.82 -39.58 -0.35 -1.86 16 15 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 16 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 17 C -0.13 -1.69 10.05 -39.59 -0.40 -2.09 16 18 C -0.11 -1.64 8.74 -39.58 -0.35 -1.98 16 19 C 0.12 1.77 6.35 -3.13 -0.02 1.75 16 20 N -0.73 -9.58 5.39 -59.21 -0.32 -9.90 16 21 C 0.53 8.38 7.48 -10.86 -0.08 8.30 16 22 O -0.54 -10.09 18.03 5.55 0.10 -9.99 16 23 C -0.14 -2.24 5.65 -26.75 -0.15 -2.39 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.13 2.83 6.02 -52.49 -0.32 2.51 16 26 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.12 1.61 6.17 -52.48 -0.32 1.28 16 30 H 0.10 1.34 7.74 -51.93 -0.40 0.94 16 31 H 0.08 1.29 7.88 -51.93 -0.41 0.88 16 32 H 0.41 4.29 8.96 -40.82 -0.37 3.93 16 33 H 0.11 1.68 7.90 -51.93 -0.41 1.27 16 34 H 0.13 2.19 6.98 -51.93 -0.36 1.83 16 LS Contribution 295.06 15.07 4.45 4.45 Total: -1.00 -31.53 295.06 -6.21 -37.74 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.35 Total: 8.56 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.37 Total: -4.30 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.44 Total: -32.53 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.35 Total: -29.00 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.53 -6.21 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811237889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.849 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds