Wall clock time and date at job start Mon Mar 30 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48491 * 109.46976 * 239.99922 * 3 2 1 5 5 H 1.48497 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47024 * 119.99620 * 3 2 1 7 7 C 1.38798 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 179.97438 * 7 2 1 9 9 O 1.34865 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.34776 * 116.99949 * 179.97438 * 9 7 2 11 11 O 1.21546 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.47332 * 120.00197 * 179.97438 * 10 9 7 13 13 C 1.39784 * 120.20345 * 5.27194 * 12 10 9 14 14 C 1.37766 * 119.90697 * 179.74149 * 13 12 10 15 15 C 1.38589 * 120.34494 * 0.27537 * 14 13 12 16 16 C 1.38026 * 120.42329 * 359.97438 * 15 14 13 17 17 C 1.38841 * 120.07966 * 359.97229 * 16 15 14 18 18 N 1.39259 * 120.17122 * 180.02562 * 17 16 15 19 19 C 1.34767 * 120.00153 * 25.20256 * 18 17 16 20 20 O 1.21276 * 120.00005 * 5.58074 * 19 18 17 21 21 C 1.50702 * 120.00071 * 185.58274 * 19 18 17 22 22 C 1.53009 * 117.49820 * 248.74842 * 21 19 18 23 23 C 1.53005 * 117.50103 * 180.08805 * 21 19 18 24 24 H 0.96991 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.04103 * 0.02562 * 13 12 10 26 26 H 1.08001 * 119.82264 * 180.25113 * 14 13 12 27 27 H 1.07995 * 119.78707 * 179.97438 * 15 14 13 28 28 H 1.07995 * 119.96284 * 180.02562 * 16 15 14 29 29 H 0.96999 * 119.99707 * 205.20867 * 18 17 16 30 30 H 1.08991 * 115.55023 * 34.41615 * 21 19 18 31 31 H 1.08997 * 117.49718 * 359.97438 * 22 21 19 32 32 H 1.08997 * 117.49946 * 145.02310 * 22 21 19 33 33 H 1.08992 * 117.50196 * 214.98109 * 23 21 19 34 34 H 1.09003 * 117.49541 * 359.97400 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0082 -1.2020 0.0005 8 1 3.0882 -1.2021 0.0001 9 8 1.3339 -2.3700 0.0005 10 6 2.0679 -3.5003 0.0005 11 8 3.2817 -3.4367 0.0010 12 6 1.3991 -4.8131 0.0011 13 6 0.0080 -4.8936 -0.1094 14 6 -0.6107 -6.1245 -0.1135 15 6 0.1387 -7.2851 -0.0030 16 6 1.5127 -7.2217 0.1120 17 6 2.1544 -5.9905 0.1170 18 7 3.5406 -5.9243 0.2324 19 6 4.3000 -6.9661 -0.1601 20 8 3.7862 -7.9192 -0.7064 21 6 5.7877 -6.9469 0.0799 22 6 6.6992 -6.8296 -1.1435 23 6 6.5950 -8.1585 -0.3907 24 1 -0.4849 0.8400 -0.0004 25 1 -0.5806 -3.9922 -0.1959 26 1 -1.6853 -6.1853 -0.2030 27 1 -0.3557 -8.2453 -0.0068 28 1 2.0893 -8.1308 0.1973 29 1 3.9596 -5.1283 0.5954 30 1 6.1097 -6.4529 0.9965 31 1 6.2228 -6.7668 -2.1218 32 1 7.6210 -6.2588 -1.0315 33 1 7.4482 -8.4613 0.2162 34 1 6.0500 -8.9697 -0.8735 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815515510.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:59 Heat of formation + Delta-G solvation = -55.528319 kcal Electronic energy + Delta-G solvation = -20554.147951 eV Core-core repulsion = 17225.600105 eV Total energy + Delta-G solvation = -3328.547846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64900 -39.20749 -38.01371 -36.19701 -35.46129 -34.25781 -32.30766 -30.85867 -29.54424 -25.79629 -24.80058 -23.36812 -22.54705 -22.00987 -20.39550 -19.77640 -17.88267 -17.43781 -17.26423 -16.92093 -15.49839 -15.29945 -14.93768 -14.73840 -14.52201 -14.39424 -14.07906 -13.73667 -13.35143 -12.59369 -12.54714 -12.45757 -11.78455 -11.69049 -11.60208 -11.30941 -11.21712 -10.71295 -10.63470 -10.56784 -10.54292 -10.27476 -9.96220 -9.65809 -9.10884 -8.71989 -8.58182 -7.79013 -6.55176 -4.18407 1.18799 1.63643 2.61763 3.08074 3.11833 3.15885 3.19332 3.49044 3.79816 3.83749 4.31835 4.46414 4.62943 4.72497 4.79491 5.03993 5.05663 5.26261 5.31172 5.49538 5.53830 5.64170 5.77171 5.80693 5.86060 6.00448 6.22146 6.37203 6.59483 6.73675 6.78851 6.85864 7.24194 7.28816 7.69670 7.83829 8.25624 8.58846 8.92843 9.69809 10.61952 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.005330 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.786743 B = 5252.130445 C = 6745.126607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.377 4.377 8 H 0.099 0.901 9 O -0.197 6.197 10 C 0.437 3.563 11 O -0.564 6.564 12 C -0.127 4.127 13 C -0.051 4.051 14 C -0.154 4.154 15 C -0.085 4.085 16 C -0.150 4.150 17 C 0.196 3.804 18 N -0.648 5.648 19 C 0.541 3.459 20 O -0.532 6.532 21 C -0.193 4.193 22 C -0.150 4.150 23 C -0.148 4.148 24 H 0.273 0.727 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.146 0.854 29 H 0.428 0.572 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -11.922 1.128 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.453 4.453 8 H 0.116 0.884 9 O -0.103 6.103 10 C 0.287 3.713 11 O -0.465 6.465 12 C -0.131 4.131 13 C -0.070 4.070 14 C -0.173 4.173 15 C -0.104 4.104 16 C -0.170 4.170 17 C 0.099 3.901 18 N -0.298 5.298 19 C 0.330 3.670 20 O -0.409 6.409 21 C -0.214 4.214 22 C -0.187 4.187 23 C -0.185 4.185 24 H 0.083 0.917 25 H 0.162 0.838 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.274 0.726 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.590 -12.334 0.779 13.564 hybrid contribution 0.501 1.355 0.212 1.460 sum 6.090 -10.979 0.991 12.595 Atomic orbital electron populations 1.69966 1.06100 1.28211 1.44845 1.25404 0.95869 0.99031 0.95961 0.85685 0.78666 0.79083 0.79446 1.19363 1.20235 1.19348 1.21280 0.92569 0.79680 1.51775 0.88378 1.83909 1.39002 1.13208 1.74172 1.20577 0.85611 0.85312 0.79763 1.90387 1.15266 1.87258 1.53570 1.19152 0.94123 0.90203 1.09642 1.21441 0.92772 0.98819 0.93929 1.21062 1.00048 0.92144 1.04040 1.21133 0.93311 0.98370 0.97612 1.21250 0.94776 0.96850 1.04147 1.17718 0.82734 0.92909 0.96733 1.43910 1.04618 1.20334 1.60922 1.19831 0.88034 0.81923 0.77241 1.90620 1.74077 1.34596 1.41633 1.22144 0.90218 1.07171 1.01843 1.22962 1.00160 1.00317 0.95272 1.22971 1.00933 0.91810 1.02771 0.91711 0.83835 0.85684 0.85811 0.83603 0.72622 0.85517 0.88137 0.87600 0.87905 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.18 13.67 55.49 0.76 -23.43 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.95 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.38 -10.80 9.65 30.94 0.30 -10.50 16 8 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 9 O -0.20 -5.53 9.00 -21.79 -0.20 -5.73 16 10 C 0.44 10.91 7.81 34.43 0.27 11.17 16 11 O -0.56 -14.30 13.07 -19.30 -0.25 -14.55 16 12 C -0.13 -2.68 5.89 -104.82 -0.62 -3.29 16 13 C -0.05 -0.95 9.61 -39.18 -0.38 -1.32 16 14 C -0.15 -2.35 10.02 -39.62 -0.40 -2.74 16 15 C -0.09 -1.25 10.03 -39.53 -0.40 -1.65 16 16 C -0.15 -2.53 8.70 -39.44 -0.34 -2.88 16 17 C 0.20 3.75 6.43 -83.46 -0.54 3.22 16 18 N -0.65 -11.66 4.85 -9.67 -0.05 -11.70 16 19 C 0.54 8.82 7.41 -10.99 -0.08 8.74 16 20 O -0.53 -9.62 13.43 5.56 0.07 -9.55 16 21 C -0.19 -2.38 6.19 -91.76 -0.57 -2.95 16 22 C -0.15 -1.62 10.24 -26.68 -0.27 -1.89 16 23 C -0.15 -1.50 10.05 -26.69 -0.27 -1.77 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.14 2.78 7.62 -52.49 -0.40 2.38 16 26 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.15 2.43 5.81 -52.49 -0.30 2.12 16 29 H 0.43 7.88 6.03 -40.82 -0.25 7.63 16 30 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.21 7.67 -51.93 -0.40 0.81 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -32.00 303.39 -6.88 -38.88 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -3.38 Total: 10.77 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.39 Total: -4.80 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.71 Total: -35.13 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.37 Total: -29.83 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.00 -6.88 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815515510.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.652 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds