Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48491 * 109.46976 * 239.99922 * 3 2 1 5 5 H 1.48497 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47024 * 119.99620 * 3 2 1 7 7 C 1.38798 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 179.97438 * 7 2 1 9 9 O 1.34865 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.34776 * 116.99949 * 179.97438 * 9 7 2 11 11 O 1.21546 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.47332 * 120.00197 * 179.97438 * 10 9 7 13 13 C 1.39784 * 120.20345 * 5.27194 * 12 10 9 14 14 C 1.37766 * 119.90697 * 179.74149 * 13 12 10 15 15 C 1.38589 * 120.34494 * 0.27537 * 14 13 12 16 16 C 1.38026 * 120.42329 * 359.97438 * 15 14 13 17 17 C 1.38841 * 120.07966 * 359.97229 * 16 15 14 18 18 N 1.39259 * 120.17122 * 180.02562 * 17 16 15 19 19 C 1.34767 * 120.00153 * 25.20256 * 18 17 16 20 20 O 1.21276 * 120.00005 * 5.58074 * 19 18 17 21 21 C 1.50702 * 120.00071 * 185.58274 * 19 18 17 22 22 C 1.53009 * 117.49820 * 248.74842 * 21 19 18 23 23 C 1.53005 * 117.50103 * 180.08805 * 21 19 18 24 24 H 0.96991 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.04103 * 0.02562 * 13 12 10 26 26 H 1.08001 * 119.82264 * 180.25113 * 14 13 12 27 27 H 1.07995 * 119.78707 * 179.97438 * 15 14 13 28 28 H 1.07995 * 119.96284 * 180.02562 * 16 15 14 29 29 H 0.96999 * 119.99707 * 205.20867 * 18 17 16 30 30 H 1.08991 * 115.55023 * 34.41615 * 21 19 18 31 31 H 1.08997 * 117.49718 * 359.97438 * 22 21 19 32 32 H 1.08997 * 117.49946 * 145.02310 * 22 21 19 33 33 H 1.08992 * 117.50196 * 214.98109 * 23 21 19 34 34 H 1.09003 * 117.49541 * 359.97400 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0082 -1.2020 0.0005 8 1 3.0882 -1.2021 0.0001 9 8 1.3339 -2.3700 0.0005 10 6 2.0679 -3.5003 0.0005 11 8 3.2817 -3.4367 0.0010 12 6 1.3991 -4.8131 0.0011 13 6 0.0080 -4.8936 -0.1094 14 6 -0.6107 -6.1245 -0.1135 15 6 0.1387 -7.2851 -0.0030 16 6 1.5127 -7.2217 0.1120 17 6 2.1544 -5.9905 0.1170 18 7 3.5406 -5.9243 0.2324 19 6 4.3000 -6.9661 -0.1601 20 8 3.7862 -7.9192 -0.7064 21 6 5.7877 -6.9469 0.0799 22 6 6.6992 -6.8296 -1.1435 23 6 6.5950 -8.1585 -0.3907 24 1 -0.4849 0.8400 -0.0004 25 1 -0.5806 -3.9922 -0.1959 26 1 -1.6853 -6.1853 -0.2030 27 1 -0.3557 -8.2453 -0.0068 28 1 2.0893 -8.1308 0.1973 29 1 3.9596 -5.1283 0.5954 30 1 6.1097 -6.4529 0.9965 31 1 6.2228 -6.7668 -2.1218 32 1 7.6210 -6.2588 -1.0315 33 1 7.4482 -8.4613 0.2162 34 1 6.0500 -8.9697 -0.8735 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815515510.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = -74.977598 kcal Electronic energy + Delta-G solvation = -20554.991335 eV Core-core repulsion = 17225.600105 eV Total energy + Delta-G solvation = -3329.391230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07212 -40.92997 -39.50001 -37.42123 -37.17739 -35.72726 -34.36259 -32.34989 -30.90629 -27.75805 -26.07379 -24.94355 -23.50056 -23.27819 -22.02659 -21.05290 -19.93462 -19.01615 -18.57087 -18.39690 -17.21839 -16.73362 -16.41962 -16.31035 -16.14774 -15.80025 -15.49594 -15.14422 -14.79123 -14.28883 -13.92305 -13.66010 -13.63549 -13.16700 -13.02869 -12.58905 -12.46446 -12.42681 -12.18098 -12.06765 -11.73038 -11.57566 -11.49603 -11.14581 -10.82567 -10.74391 -10.04111 -9.19014 -8.59123 -6.36179 -0.29316 0.26206 1.33307 1.36152 1.38573 1.49638 1.74736 1.95828 2.06711 2.66065 2.74419 2.88547 3.01788 3.51746 3.76538 3.81558 3.94239 4.07288 4.15568 4.21250 4.39750 4.40151 4.66103 4.70215 4.84150 4.94388 4.99187 5.10486 5.19190 5.21059 5.29199 5.41742 5.46653 5.76043 5.93375 6.30428 6.55638 6.85029 6.94886 7.66319 8.60970 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.005330 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.786743 B = 5252.130445 C = 6745.126607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.420 4.420 8 H 0.088 0.912 9 O -0.227 6.227 10 C 0.438 3.562 11 O -0.576 6.576 12 C -0.166 4.166 13 C -0.059 4.059 14 C -0.141 4.141 15 C -0.059 4.059 16 C -0.156 4.156 17 C 0.187 3.813 18 N -0.657 5.657 19 C 0.537 3.463 20 O -0.553 6.553 21 C -0.211 4.211 22 C -0.149 4.149 23 C -0.128 4.128 24 H 0.281 0.719 25 H 0.127 0.873 26 H 0.165 0.835 27 H 0.172 0.828 28 H 0.152 0.848 29 H 0.423 0.577 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -13.367 1.326 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.838 3.162 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.105 0.895 9 O -0.135 6.135 10 C 0.289 3.711 11 O -0.476 6.476 12 C -0.170 4.170 13 C -0.078 4.078 14 C -0.160 4.160 15 C -0.077 4.077 16 C -0.176 4.176 17 C 0.090 3.910 18 N -0.305 5.305 19 C 0.328 3.672 20 O -0.432 6.432 21 C -0.232 4.232 22 C -0.186 4.186 23 C -0.165 4.165 24 H 0.090 0.910 25 H 0.145 0.855 26 H 0.183 0.817 27 H 0.189 0.811 28 H 0.169 0.831 29 H 0.267 0.733 30 H 0.163 0.837 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.006 -13.819 0.975 15.099 hybrid contribution 0.348 1.536 0.133 1.581 sum 6.354 -12.282 1.108 13.873 Atomic orbital electron populations 1.70054 1.07716 1.29707 1.45768 1.26594 0.96910 1.02351 0.94465 0.84648 0.77603 0.74056 0.79844 1.18649 1.18384 1.18367 1.21511 0.92492 0.80821 1.54730 0.89456 1.83932 1.39766 1.13890 1.75867 1.21444 0.85807 0.86134 0.77693 1.90350 1.15922 1.87799 1.53545 1.19090 0.95379 0.88645 1.13874 1.21463 0.91803 1.00065 0.94439 1.21442 1.02006 0.90544 1.01974 1.21681 0.92241 1.00163 0.93650 1.21467 0.96046 0.95824 1.04291 1.18001 0.83395 0.93097 0.96548 1.44054 1.04572 1.20712 1.61194 1.20541 0.89546 0.80941 0.76206 1.90587 1.74919 1.35117 1.42534 1.22257 0.87646 1.09850 1.03440 1.23086 1.00322 1.01372 0.93819 1.23089 1.00778 0.90676 1.01945 0.90972 0.85524 0.81702 0.81052 0.83107 0.73256 0.83690 0.89765 0.85115 0.84637 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.19 13.67 21.63 0.30 -51.89 16 2 C 0.00 -0.11 5.49 84.89 0.47 0.35 16 3 Si 1.02 42.58 29.55 68.60 2.03 44.60 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.42 -25.27 9.65 67.95 0.66 -24.62 16 8 H 0.09 5.24 6.86 -2.91 -0.02 5.22 16 9 O -0.23 -13.55 9.00 10.78 0.10 -13.45 16 10 C 0.44 23.12 7.81 70.22 0.55 23.67 16 11 O -0.58 -30.75 13.07 19.69 0.26 -30.50 16 12 C -0.17 -7.22 5.89 -19.99 -0.12 -7.34 16 13 C -0.06 -2.22 9.61 22.53 0.22 -2.00 16 14 C -0.14 -3.92 10.02 22.24 0.22 -3.69 16 15 C -0.06 -1.51 10.03 22.30 0.22 -1.29 16 16 C -0.16 -5.02 8.70 22.36 0.19 -4.83 16 17 C 0.19 7.23 6.43 38.62 0.25 7.48 16 18 N -0.66 -24.16 4.85 -302.91 -1.47 -25.63 16 19 C 0.54 17.45 7.41 87.66 0.65 18.10 16 20 O -0.55 -19.77 13.43 -3.02 -0.04 -19.81 16 21 C -0.21 -4.97 6.19 -11.53 -0.07 -5.04 16 22 C -0.15 -3.00 10.24 30.62 0.31 -2.69 16 23 C -0.13 -2.32 10.05 30.62 0.31 -2.01 16 24 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.13 5.16 7.62 -2.91 -0.02 5.14 16 26 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 27 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.15 4.76 5.81 -2.91 -0.02 4.74 16 29 H 0.42 16.24 6.03 -92.71 -0.56 15.68 16 30 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.00 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -73.76 303.39 5.62 -68.14 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.59 Total: 32.43 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 3.86 Total: -3.90 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.17 Total: -77.52 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: 0.31 Total: -63.75 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -73.76 5.62 -68.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815515510.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.833 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds