Wall clock time and date at job start Mon Mar 30 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00353 * 2 1 4 4 H 1.48497 * 109.47244 * 274.65985 * 3 2 1 5 5 H 1.48504 * 109.46869 * 34.65539 * 3 2 1 6 6 H 1.48505 * 109.47209 * 154.65606 * 3 2 1 7 7 C 1.39939 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 162.20787 * 7 2 1 9 9 C 1.41437 * 120.00061 * 342.20688 * 7 2 1 10 10 C 1.40784 * 120.17813 * 335.19459 * 9 7 2 11 11 C 1.37708 * 120.03982 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41447 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35626 * 0.02629 * 12 11 10 14 14 C 1.47891 * 120.02506 * 179.97438 * 13 12 11 15 15 O 1.21542 * 119.99790 * 180.02562 * 14 13 12 16 16 N 1.34774 * 119.99925 * 359.97438 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.61836 * 36.61788 * 17 16 14 19 19 C 1.54260 * 110.69256 * 273.54759 * 17 16 14 20 20 O 1.45585 * 106.37290 * 240.52270 * 19 17 16 21 21 C 1.34528 * 109.63665 * 21.27024 * 20 19 17 22 22 O 1.20823 * 126.43043 * 147.15800 * 21 20 19 23 23 C 1.51788 * 107.13818 * 327.17109 * 21 20 19 24 24 C 1.39034 * 119.94984 * 359.70152 * 13 12 11 25 25 H 0.96998 * 119.99413 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.97951 * 359.94746 * 10 9 7 27 27 H 1.08000 * 119.79715 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.82799 * 180.02562 * 12 11 10 29 29 H 0.97000 * 120.00562 * 0.02562 * 16 14 13 30 30 H 1.09003 * 110.07365 * 359.75044 * 19 17 16 31 31 H 1.09000 * 110.07599 * 121.24087 * 19 17 16 32 32 H 1.09007 * 110.60938 * 272.11969 * 23 21 20 33 33 H 1.08997 * 110.61168 * 149.14062 * 23 21 20 34 34 H 1.07998 * 120.20377 * 180.29699 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3914 2.1032 -1.3954 5 1 1.4925 2.6222 0.7962 6 1 3.5857 1.4136 0.5993 7 6 2.0079 -1.2119 0.0005 8 1 3.0492 -1.2345 -0.2852 9 6 1.3514 -2.4073 0.3754 10 6 0.2242 -2.3616 1.2176 11 6 -0.4131 -3.5271 1.5803 12 6 0.0467 -4.7489 1.1216 13 6 1.1652 -4.8141 0.2840 14 6 1.6506 -6.1240 -0.2016 15 8 2.6228 -6.1801 -0.9290 16 7 1.0157 -7.2554 0.1632 17 6 1.4970 -8.5529 -0.3174 18 1 2.5858 -8.5639 -0.3674 19 6 0.8848 -8.8857 -1.6937 20 8 0.1312 -10.1192 -1.5202 21 6 -0.1684 -10.2868 -0.2195 22 8 -1.1624 -10.8093 0.2263 23 6 0.9765 -9.6959 0.5830 24 6 1.8166 -3.6462 -0.0962 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1406 -1.4118 1.5798 27 1 -1.2772 -3.4875 2.2270 28 1 -0.4606 -5.6571 1.4116 29 1 0.2401 -7.2107 0.7440 30 1 0.2199 -8.0825 -2.0114 31 1 1.6755 -9.0298 -2.4299 32 1 1.7554 -10.4410 0.7461 33 1 0.6160 -9.3020 1.5332 34 1 2.6776 -3.6914 -0.7466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816677565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:23 Heat of formation + Delta-G solvation = -97.750503 kcal Electronic energy + Delta-G solvation = -20149.248407 eV Core-core repulsion = 16818.869670 eV Total energy + Delta-G solvation = -3330.378738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26596 -39.36295 -37.72896 -37.12111 -34.95461 -33.82372 -31.42416 -29.98700 -29.54151 -28.12212 -25.43146 -23.51077 -21.79928 -21.53929 -20.75459 -20.06843 -18.13709 -17.34069 -17.10198 -16.56741 -16.13480 -15.83078 -15.24093 -14.74665 -14.50452 -14.10643 -13.89740 -13.44967 -13.40804 -12.96644 -12.80919 -12.51697 -12.38540 -12.16187 -11.75063 -11.26330 -11.18143 -10.87602 -10.80755 -10.62799 -10.49093 -10.30495 -9.65804 -9.37716 -9.30077 -9.15918 -7.74390 -7.64958 -6.90971 -4.51556 1.64080 2.00069 2.65644 3.01247 3.02824 3.07974 3.09479 3.17700 3.59097 3.72237 3.84629 4.03133 4.34192 4.51078 4.73983 4.96020 5.22267 5.27125 5.40348 5.49718 5.63882 5.98869 6.12022 6.33073 6.50832 6.77944 6.82964 6.86832 7.06538 7.15376 7.24587 7.47646 7.62520 7.77477 7.84837 8.05647 8.42951 8.54401 8.70680 8.74089 10.04549 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.040477 B = 0.003555 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.590831 B = 7873.400029 C = 8241.073441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.141 4.141 11 C -0.110 4.110 12 C -0.210 4.210 13 C -0.121 4.121 14 C 0.570 3.430 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.117 3.883 18 H 0.122 0.878 19 C 0.043 3.957 20 O -0.355 6.355 21 C 0.488 3.512 22 O -0.447 6.447 23 C -0.195 4.195 24 C -0.153 4.153 25 H 0.283 0.717 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.404 0.596 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -10.919 1.477 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.161 4.161 11 C -0.129 4.129 12 C -0.230 4.230 13 C -0.124 4.124 14 C 0.361 3.639 15 O -0.424 6.424 16 N -0.387 5.387 17 C 0.010 3.990 18 H 0.140 0.860 19 C -0.032 4.032 20 O -0.272 6.272 21 C 0.327 3.673 22 O -0.329 6.329 23 C -0.234 4.234 24 C -0.174 4.174 25 H 0.094 0.906 26 H 0.140 0.860 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.241 0.759 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.199 -11.170 0.970 11.276 hybrid contribution -0.089 0.862 0.288 0.913 sum 1.110 -10.307 1.258 10.443 Atomic orbital electron populations 1.69796 1.07651 1.29536 1.34726 1.25923 0.94758 1.01501 0.92074 0.86264 0.80770 0.80366 0.79202 1.19449 1.19960 1.18286 1.19614 0.98312 0.91027 1.39827 0.90034 1.17590 0.91564 0.91862 0.89346 1.21524 0.98432 0.97122 0.98983 1.20620 0.99071 0.92954 1.00236 1.20385 0.99846 0.96508 1.06279 1.19236 0.99229 0.91027 1.02950 1.18948 0.81782 0.84289 0.78851 1.90692 1.27042 1.87475 1.37159 1.46108 1.34362 1.04704 1.53532 1.21947 1.01750 0.83308 0.91962 0.86001 1.24639 0.96197 0.83383 0.98988 1.87101 1.69996 1.41717 1.28414 1.23253 0.85591 0.75863 0.82561 1.90724 1.27822 1.40451 1.73885 1.23326 0.99239 0.99753 1.01078 1.21209 1.02151 0.91144 1.02879 0.90640 0.86013 0.88697 0.89210 0.75872 0.88732 0.86640 0.85282 0.86448 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.43 10.97 55.55 0.61 -18.82 16 2 C 0.08 1.81 5.13 -17.34 -0.09 1.72 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.81 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.64 9.05 -37.73 -0.34 -11.98 16 8 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 9 C 0.10 2.50 5.57 -106.87 -0.59 1.90 16 10 C -0.14 -3.39 8.69 -38.81 -0.34 -3.73 16 11 C -0.11 -2.33 10.01 -39.73 -0.40 -2.72 16 12 C -0.21 -4.10 9.55 -38.92 -0.37 -4.47 16 13 C -0.12 -2.54 5.87 -105.03 -0.62 -3.16 16 14 C 0.57 10.33 7.77 -12.31 -0.10 10.23 16 15 O -0.55 -11.17 16.06 5.33 0.09 -11.08 16 16 N -0.73 -9.63 4.99 -53.31 -0.27 -9.90 16 17 C 0.12 1.20 3.43 -66.47 -0.23 0.97 16 18 H 0.12 1.23 7.69 -51.93 -0.40 0.83 16 19 C 0.04 0.45 7.70 37.82 0.29 0.74 16 20 O -0.35 -4.18 11.07 -39.60 -0.44 -4.62 16 21 C 0.49 5.70 8.57 36.54 0.31 6.01 16 22 O -0.45 -6.67 18.00 -18.28 -0.33 -7.00 16 23 C -0.20 -1.60 6.66 -26.54 -0.18 -1.78 16 24 C -0.15 -3.66 9.34 -38.44 -0.36 -4.02 16 25 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 26 H 0.12 3.02 6.17 -52.49 -0.32 2.70 16 27 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.09 1.42 6.38 -52.49 -0.33 1.08 16 29 H 0.40 4.76 6.48 -40.82 -0.26 4.49 16 30 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 31 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.12 0.87 7.87 -51.93 -0.41 0.47 16 34 H 0.11 2.61 7.64 -52.49 -0.40 2.21 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -29.32 300.05 -7.21 -36.53 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.36 Total: 7.84 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.00 Total: -10.27 kcal Atomic # 7 Polarization: -29.07 SS G_CDS: 0.34 Total: -28.72 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.68 Total: -22.70 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.32 -7.21 -36.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816677565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.222 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds