Wall clock time and date at job start Mon Mar 30 2020 01:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47174 * 240.00007 * 3 2 1 5 5 H 1.48505 * 109.46721 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47359 * 119.99559 * 3 2 1 7 7 C 1.37882 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99620 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.46986 * 179.97438 * 9 7 2 11 11 O 1.42102 * 110.54530 * 68.37403 * 10 9 7 12 12 O 1.42099 * 110.54362 * 291.62732 * 10 9 7 13 13 N 1.65598 * 104.45183 * 179.97438 * 10 9 7 14 14 C 1.34774 * 119.99746 * 64.99951 * 13 10 9 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 10 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 10 17 17 C 1.52997 * 109.47238 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.46947 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46891 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.50207 * 243.74662 * 19 18 17 21 21 C 1.53007 * 117.49787 * 175.08539 * 19 18 17 22 22 H 0.96989 * 120.00396 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47315 * 59.99737 * 9 7 2 24 24 H 1.08997 * 109.47262 * 299.99960 * 9 7 2 25 25 H 0.96994 * 120.00498 * 245.00119 * 13 10 9 26 26 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 27 27 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 28 28 H 1.09001 * 109.46832 * 299.99686 * 17 16 14 29 29 H 1.09004 * 109.47261 * 59.99705 * 17 16 14 30 30 H 1.08992 * 109.47554 * 299.99696 * 18 17 16 31 31 H 1.08996 * 109.47261 * 60.00229 * 18 17 16 32 32 H 1.09000 * 115.54916 * 29.42185 * 19 18 17 33 33 H 1.09004 * 117.49771 * 0.02562 * 20 19 18 34 34 H 1.08995 * 117.49865 * 145.02184 * 20 19 18 35 35 H 1.08995 * 117.49755 * 214.98010 * 21 19 18 36 36 H 1.08996 * 117.49601 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 8 3.1268 -3.9383 1.2375 12 8 3.1267 -3.9382 -1.2364 13 7 1.4797 -5.2341 0.0013 14 6 0.6887 -5.5032 -1.0563 15 8 0.6731 -4.7524 -2.0086 16 6 -0.1766 -6.7371 -1.0554 17 6 -0.9683 -6.8057 -2.3628 18 6 -1.8462 -8.0587 -2.3621 19 6 -2.6385 -8.1270 -3.6693 20 6 -4.1631 -8.0374 -3.5769 21 6 -3.4935 -9.3723 -3.9130 22 1 -0.4850 0.8399 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 1.4923 -5.8348 0.7627 26 1 0.4531 -7.6223 -0.9656 27 1 -0.8675 -6.6958 -0.2134 28 1 -1.5980 -5.9205 -2.4530 29 1 -0.2770 -6.8473 -3.2045 30 1 -1.2164 -8.9437 -2.2721 31 1 -2.5375 -8.0176 -1.5205 32 1 -2.1589 -7.6687 -4.5342 33 1 -4.6017 -7.9294 -2.5849 34 1 -4.6865 -7.5204 -4.3811 35 1 -3.5766 -9.7329 -4.9382 36 1 -3.4918 -10.1426 -3.1419 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:38 Heat of formation + Delta-G solvation = -112.574927 kcal Electronic energy + Delta-G solvation = -19060.840687 eV Core-core repulsion = 15865.263065 eV Total energy + Delta-G solvation = -3195.577621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82492 -37.87970 -36.23457 -35.16145 -34.08064 -33.88486 -33.34595 -29.05811 -28.33009 -23.60644 -23.12363 -22.56073 -20.72911 -20.61553 -19.14427 -17.55132 -17.11595 -16.45487 -16.11018 -15.69295 -15.36064 -14.71882 -14.66653 -14.33691 -14.05301 -13.99346 -12.74729 -12.49319 -12.39794 -12.14108 -11.93639 -11.79377 -11.74442 -11.46901 -11.28754 -11.21476 -11.18478 -10.94304 -10.88115 -10.65503 -10.46219 -10.43050 -10.06123 -9.94626 -9.76895 -9.15405 -8.69834 -6.32553 -4.43805 1.05759 2.43757 3.20613 3.25020 3.27406 3.32110 3.59114 4.21366 4.30866 4.49578 4.62331 4.71653 4.74812 4.91930 4.96016 5.01439 5.13748 5.20280 5.29729 5.41041 5.45564 5.52257 5.61436 5.62375 5.76073 5.89106 6.02879 6.13892 6.30206 6.59233 6.76995 7.03159 7.42031 7.73849 7.82556 8.57181 9.23466 10.79247 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.003999 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.065611 B = 7000.552389 C = 7851.218550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.070 0.930 9 C -0.404 4.404 10 S 2.554 3.446 11 O -0.971 6.971 12 O -0.954 6.954 13 N -1.063 6.063 14 C 0.529 3.471 15 O -0.488 6.488 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.181 4.181 21 C -0.185 4.185 22 H 0.269 0.731 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.424 0.576 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -16.980 -1.976 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.088 0.912 9 C -0.541 4.541 10 S 2.656 3.344 11 O -0.962 6.962 12 O -0.944 6.944 13 N -0.822 5.822 14 C 0.315 3.685 15 O -0.359 6.359 16 C -0.184 4.184 17 C -0.146 4.146 18 C -0.126 4.126 19 C -0.169 4.169 20 C -0.218 4.218 21 C -0.222 4.222 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.102 0.898 25 H 0.258 0.742 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.243 -16.392 -2.710 17.748 hybrid contribution -0.266 0.654 0.501 0.866 sum -6.508 -15.738 -2.209 17.173 Atomic orbital electron populations 1.69939 1.06270 1.27863 1.47248 1.24921 0.95038 0.99582 0.93374 0.86396 0.79614 0.81273 0.79462 1.19360 1.20668 1.19413 1.20254 0.92715 0.88522 1.56037 0.91194 1.27594 1.09888 1.09244 1.07335 1.07083 0.77276 0.76026 0.74009 1.93516 1.71285 1.86035 1.45343 1.93526 1.70873 1.85276 1.44753 1.55497 1.56333 1.43767 1.26644 1.20651 0.78936 0.87891 0.81007 1.90910 1.63567 1.48835 1.32540 1.21819 0.99090 0.96056 1.01431 1.21408 0.98445 0.98527 0.96258 1.21195 0.97916 0.98048 0.95440 1.22362 0.92712 1.01915 0.99941 1.23049 0.95273 1.00542 1.02975 1.22973 1.05313 0.91536 1.02371 0.92095 0.88388 0.89756 0.74210 0.88317 0.88088 0.90482 0.90745 0.91519 0.91691 0.87599 0.88783 0.88965 0.89039 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.13 9.13 -34.44 -0.31 -15.44 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 9 C -0.40 -10.09 5.64 36.01 0.20 -9.89 16 10 S 2.55 55.42 5.03 -107.50 -0.54 54.88 16 11 O -0.97 -22.25 18.08 -57.54 -1.04 -23.29 16 12 O -0.95 -23.92 17.04 -64.79 -1.10 -25.02 16 13 N -1.06 -16.58 5.60 31.22 0.17 -16.41 16 14 C 0.53 8.35 7.57 -10.98 -0.08 8.26 16 15 O -0.49 -9.97 14.09 -11.56 -0.16 -10.13 16 16 C -0.14 -1.44 5.70 -27.88 -0.16 -1.60 16 17 C -0.11 -1.15 4.46 -26.73 -0.12 -1.27 16 18 C -0.09 -0.73 5.50 -26.73 -0.15 -0.88 16 19 C -0.15 -1.31 5.73 -90.61 -0.52 -1.83 16 20 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 21 C -0.18 -1.40 10.26 -26.69 -0.27 -1.67 16 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.10 2.57 7.19 -51.92 -0.37 2.19 16 24 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 25 H 0.42 4.66 8.79 -34.47 -0.30 4.35 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -35.81 322.78 -9.14 -44.95 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.26 Total: 2.38 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -1.78 Total: -23.99 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.91 Total: -40.87 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -2.31 Total: -58.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.54 Total: 54.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.81 -9.14 -44.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.624 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds