Wall clock time and date at job start Mon Mar 30 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47087 * 239.99930 * 3 2 1 5 5 H 1.48504 * 109.46813 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47581 * 119.99640 * 3 2 1 7 7 C 1.38814 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00486 * 180.02562 * 7 2 1 9 9 O 1.34848 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.34736 * 117.00342 * 180.02562 * 9 7 2 11 11 O 1.21513 * 119.99794 * 0.02562 * 10 9 7 12 12 C 1.47667 * 120.00399 * 180.02562 * 10 9 7 13 13 C 1.39664 * 120.15357 * 179.97438 * 12 10 9 14 14 C 1.37928 * 119.84587 * 179.97438 * 13 12 10 15 15 C 1.38378 * 120.15071 * 0.02732 * 14 13 12 16 16 C 1.50703 * 119.84286 * 179.97438 * 15 14 13 17 17 H 1.08996 * 110.21892 * 338.07127 * 16 15 14 18 18 C 1.54480 * 110.24471 * 100.00096 * 16 15 14 19 19 C 1.54627 * 101.76536 * 144.41544 * 18 16 15 20 20 C 1.51286 * 104.19454 * 335.20174 * 19 18 16 21 21 O 1.21279 * 124.93933 * 195.99132 * 20 19 18 22 22 N 1.34413 * 110.11622 * 16.25141 * 20 19 18 23 23 C 1.38381 * 120.31097 * 0.23187 * 15 14 13 24 24 C 1.37930 * 120.15423 * 359.48684 * 23 15 14 25 25 H 0.97001 * 119.99944 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.07590 * 0.02562 * 13 12 10 27 27 H 1.07999 * 119.92672 * 180.02562 * 14 13 12 28 28 H 1.09003 * 110.97169 * 26.29859 * 18 16 15 29 29 H 1.08999 * 110.97225 * 262.53474 * 18 16 15 30 30 H 1.09004 * 110.48832 * 216.52571 * 19 18 16 31 31 H 1.08997 * 110.48725 * 93.87473 * 19 18 16 32 32 H 0.96999 * 124.35074 * 180.40767 * 22 20 19 33 33 H 1.08003 * 119.92275 * 179.72764 * 23 15 14 34 34 H 1.08001 * 120.08428 * 180.25488 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0082 -1.2021 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3339 -2.3700 0.0016 10 6 2.0677 -3.5000 0.0026 11 8 3.2811 -3.4365 0.0030 12 6 1.3973 -4.8157 0.0032 13 6 2.1548 -5.9891 0.0037 14 6 1.5220 -7.2146 0.0048 15 6 0.1400 -7.2833 0.0048 16 6 -0.5442 -8.6261 0.0055 17 1 0.1302 -9.3926 -0.3762 18 6 -1.0112 -8.9874 1.4330 19 6 -2.3379 -9.7303 1.1521 20 6 -2.7887 -9.1910 -0.1875 21 8 -3.9079 -9.3038 -0.6407 22 7 -1.7668 -8.5735 -0.8049 23 6 -0.6168 -6.1248 -0.0011 24 6 0.0027 -4.8924 0.0036 25 1 -0.4850 0.8401 -0.0004 26 1 3.2335 -5.9369 0.0041 27 1 2.1065 -8.1228 0.0056 28 1 -1.1850 -8.0893 2.0256 29 1 -0.2928 -9.6439 1.9239 30 1 -3.0739 -9.5013 1.9228 31 1 -2.1680 -10.8053 1.0928 32 1 -1.8293 -8.1478 -1.6742 33 1 -1.6951 -6.1857 -0.0055 34 1 -0.5891 -3.9890 0.0032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884828436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:42 Heat of formation + Delta-G solvation = -116.786274 kcal Electronic energy + Delta-G solvation = -20019.818856 eV Core-core repulsion = 16688.614666 eV Total energy + Delta-G solvation = -3331.204191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68229 -41.10940 -39.68765 -37.58283 -37.11452 -34.39832 -32.77796 -32.26537 -31.87985 -28.60982 -27.29781 -24.63866 -23.67776 -22.66689 -21.60075 -21.32986 -19.94485 -19.08705 -18.34590 -17.69757 -17.11979 -16.62517 -16.49671 -16.33269 -15.77010 -15.56547 -15.20220 -14.64118 -14.56709 -14.41422 -14.04955 -13.91708 -13.65732 -13.48061 -13.27112 -13.06165 -12.45400 -12.27610 -12.22708 -12.17097 -11.95364 -11.90148 -11.18089 -10.93898 -10.76147 -10.28347 -9.99454 -9.77497 -8.61356 -6.39115 -0.29489 0.37737 1.31474 1.35676 1.48130 1.58934 1.72271 2.07110 2.41287 2.69054 2.73342 2.99923 3.42195 3.51766 3.76856 3.88424 3.99568 4.18905 4.21235 4.36289 4.39546 4.59906 4.71616 4.79800 4.92080 5.03595 5.07010 5.12362 5.20955 5.31204 5.42215 5.51505 5.75195 5.84400 5.88011 6.04672 6.55093 6.82893 7.23793 7.67057 8.58951 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.003599 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.900245 B = 7777.969077 C = 8420.720909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.002 4.002 3 Si 1.020 2.980 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.084 0.916 9 O -0.234 6.234 10 C 0.427 3.573 11 O -0.582 6.582 12 C -0.121 4.121 13 C -0.070 4.070 14 C -0.095 4.095 15 C -0.067 4.067 16 C 0.176 3.824 17 H 0.133 0.867 18 C -0.119 4.119 19 C -0.148 4.148 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.722 5.722 23 C -0.111 4.111 24 C -0.082 4.082 25 H 0.281 0.719 26 H 0.133 0.867 27 H 0.181 0.819 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.411 0.589 33 H 0.134 0.866 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 -20.211 2.837 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.203 4.203 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.101 0.899 9 O -0.142 6.142 10 C 0.277 3.723 11 O -0.482 6.482 12 C -0.122 4.122 13 C -0.088 4.088 14 C -0.113 4.113 15 C -0.069 4.069 16 C 0.071 3.929 17 H 0.150 0.850 18 C -0.156 4.156 19 C -0.187 4.187 20 C 0.298 3.702 21 O -0.474 6.474 22 N -0.375 5.375 23 C -0.130 4.130 24 C -0.101 4.101 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.198 0.802 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.249 0.751 33 H 0.152 0.848 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.430 -20.151 2.721 20.384 hybrid contribution 0.252 1.746 -0.596 1.862 sum -1.178 -18.405 2.125 18.565 Atomic orbital electron populations 1.70049 1.07752 1.29731 1.45872 1.26616 0.96920 1.02397 0.94379 0.84655 0.77638 0.73954 0.79929 1.18494 1.18166 1.18393 1.21494 0.92381 0.81092 1.54941 0.89856 1.83918 1.40023 1.14081 1.76136 1.21964 0.85975 0.86769 0.77604 1.90564 1.16410 1.88553 1.52637 1.19377 0.94600 0.89998 1.08267 1.21362 1.00564 0.90866 0.96019 1.21235 0.93552 0.97469 0.99040 1.20379 0.93810 0.94876 0.97791 1.20876 0.85787 0.93244 0.92970 0.84970 1.22813 0.96779 1.01987 0.94068 1.22417 0.99136 1.03456 0.93720 1.21624 0.83282 0.76767 0.88560 1.90739 1.22766 1.61374 1.72506 1.46506 1.11518 1.57246 1.22257 1.20959 1.00544 0.90808 1.00640 1.21418 0.92985 0.99263 0.96406 0.90948 0.84919 0.80152 0.90356 0.85088 0.87523 0.85108 0.75056 0.84786 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.40 13.67 21.63 0.30 -53.11 16 2 C 0.00 -0.12 5.50 84.89 0.47 0.34 16 3 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.42 -26.32 9.65 67.96 0.66 -25.66 16 8 H 0.08 5.22 6.86 -2.91 -0.02 5.20 16 9 O -0.23 -14.28 8.99 11.36 0.10 -14.18 16 10 C 0.43 22.89 7.84 70.31 0.55 23.44 16 11 O -0.58 -33.27 15.59 19.80 0.31 -32.96 16 12 C -0.12 -4.89 5.87 -20.10 -0.12 -5.00 16 13 C -0.07 -2.10 9.60 22.54 0.22 -1.88 16 14 C -0.10 -1.77 9.66 22.23 0.21 -1.55 16 15 C -0.07 -1.21 4.93 -19.80 -0.10 -1.31 16 16 C 0.18 1.84 3.71 44.70 0.17 2.01 16 17 H 0.13 0.58 8.05 -2.39 -0.02 0.56 16 18 C -0.12 -0.90 6.67 31.65 0.21 -0.69 16 19 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 20 C 0.51 9.99 8.43 87.90 0.74 10.73 16 21 O -0.59 -17.97 18.03 -3.03 -0.05 -18.03 16 22 N -0.72 -11.24 5.00 -442.97 -2.21 -13.46 16 23 C -0.11 -2.83 9.31 22.23 0.21 -2.63 16 24 C -0.08 -2.96 9.62 22.54 0.22 -2.75 16 25 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.13 4.04 7.65 -2.91 -0.02 4.02 16 27 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.08 0.83 7.90 -2.39 -0.02 0.81 16 29 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.41 6.67 8.96 -92.71 -0.83 5.84 16 33 H 0.13 3.13 7.60 -2.91 -0.02 3.11 16 34 H 0.11 4.62 7.61 -2.91 -0.02 4.60 16 Total: -1.00 -84.12 305.22 4.42 -79.70 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.31 Total: 12.65 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 3.64 Total: -6.22 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -1.92 Total: -66.56 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: 0.36 Total: -65.17 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -84.12 4.42 -79.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884828436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.087 kcal (2) G-P(sol) polarization free energy of solvation -84.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds