Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48500 * 109.46919 * 239.99602 * 3 2 1 5 5 H 1.48494 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46909 * 119.99933 * 3 2 1 7 7 C 1.38802 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00026 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47082 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99886 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99852 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99792 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47237 * 180.02562 * 14 13 11 16 16 O 1.42899 * 109.47000 * 65.00004 * 15 14 13 17 17 C 1.42902 * 114.00076 * 179.97438 * 16 15 14 18 18 H 1.09008 * 111.02032 * 25.78341 * 17 16 15 19 19 C 1.55305 * 111.12494 * 150.00188 * 17 16 15 20 20 C 1.54387 * 102.24962 * 152.05499 * 19 17 16 21 21 O 1.43236 * 107.59079 * 338.64624 * 20 19 17 22 22 C 1.43643 * 109.97149 * 358.28683 * 21 20 19 23 23 H 0.97003 * 119.99718 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46919 * 60.00274 * 10 9 7 25 25 H 1.09003 * 109.47134 * 299.99805 * 10 9 7 26 26 H 0.96999 * 120.00493 * 0.02562 * 13 11 10 27 27 H 1.09007 * 109.46916 * 60.00564 * 14 13 11 28 28 H 1.08993 * 109.47914 * 300.00397 * 14 13 11 29 29 H 1.09006 * 109.47174 * 305.00199 * 15 14 13 30 30 H 1.08996 * 109.47203 * 185.00582 * 15 14 13 31 31 H 1.08998 * 110.84418 * 33.86986 * 19 17 16 32 32 H 1.09003 * 110.84733 * 270.24395 * 19 17 16 33 33 H 1.09001 * 109.82619 * 98.16119 * 20 19 17 34 34 H 1.09004 * 109.82781 * 219.03947 * 20 19 17 35 35 H 1.08997 * 110.30752 * 143.34329 * 22 21 20 36 36 H 1.09001 * 110.31193 * 265.41926 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3302 -7.7151 0.0003 15 6 3.5022 -8.6986 0.0014 16 8 4.2321 -8.5683 1.2230 17 6 5.3536 -9.4479 1.3267 18 1 5.7264 -9.7240 0.3402 19 6 6.4784 -8.8208 2.1948 20 6 7.1810 -10.0686 2.7717 21 8 6.2546 -11.1588 2.7006 22 6 5.0026 -10.7043 2.1627 23 1 -0.4850 0.8401 -0.0004 24 1 3.1243 -3.7314 0.8905 25 1 3.1244 -3.7314 -0.8895 26 1 3.8008 -6.1836 0.0014 27 1 1.7220 -7.8752 -0.8900 28 1 1.7212 -7.8752 0.8899 29 1 4.1601 -8.4808 -0.8400 30 1 3.1225 -9.7164 -0.0883 31 1 6.0571 -8.2092 2.9926 32 1 7.1646 -8.2390 1.5794 33 1 8.0687 -10.2986 2.1825 34 1 7.4625 -9.8879 3.8091 35 1 4.5636 -11.4721 1.5257 36 1 4.3165 -10.4445 2.9689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885737427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -131.858145 kcal Electronic energy + Delta-G solvation = -18394.230754 eV Core-core repulsion = 15197.816949 eV Total energy + Delta-G solvation = -3196.413805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07831 -39.15482 -37.68459 -34.54599 -32.41894 -31.90624 -30.40352 -29.16130 -27.94300 -25.47024 -23.14199 -22.61178 -21.96422 -20.41645 -17.91902 -17.78683 -17.09139 -16.42688 -16.14653 -15.82849 -15.31663 -14.99951 -14.86949 -14.79353 -14.00589 -13.82977 -13.67747 -13.19681 -13.04267 -12.70619 -12.52053 -12.13711 -11.97544 -11.78712 -11.54549 -11.17334 -11.03575 -11.03129 -10.76133 -10.13378 -9.88488 -9.81329 -9.38612 -9.05469 -8.87751 -8.22661 -6.48765 -6.20550 -3.91059 2.93054 3.05834 3.12872 3.24107 3.28228 3.32273 3.59037 3.74855 3.98075 4.21589 4.36241 4.43593 4.60370 4.68275 4.82074 4.85190 4.99406 5.14406 5.18243 5.21864 5.27226 5.33434 5.44125 5.48780 5.56945 5.64126 5.82888 5.91607 6.16082 6.46030 6.59865 6.75669 7.60176 7.73100 8.36027 8.63234 9.24522 10.86861 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.030725 B = 0.002897 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.102594 B = 9664.242435 C =10389.128347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.734 5.734 14 C 0.124 3.876 15 C 0.048 3.952 16 O -0.364 6.364 17 C 0.054 3.946 18 H 0.082 0.918 19 C -0.156 4.156 20 C 0.051 3.949 21 O -0.381 6.381 22 C 0.031 3.969 23 H 0.269 0.731 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.400 0.600 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.085 -20.277 1.329 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.390 5.390 14 C 0.000 4.000 15 C -0.028 4.028 16 O -0.283 6.283 17 C -0.004 4.004 18 H 0.100 0.900 19 C -0.194 4.194 20 C -0.025 4.025 21 O -0.301 6.301 22 C -0.046 4.046 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.234 0.766 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.894 -20.589 1.538 23.827 hybrid contribution 2.484 1.372 -0.262 2.850 sum 14.378 -19.217 1.276 24.035 Atomic orbital electron populations 1.70012 1.05953 1.27553 1.46806 1.24994 0.95032 0.99021 0.94549 0.86219 0.79229 0.81235 0.78787 1.19960 1.20815 1.19932 1.22832 0.94877 0.91689 1.59023 0.90986 1.85387 1.04985 0.96293 1.96720 1.23523 1.06525 0.95382 1.04908 1.20305 0.86497 0.86319 0.75108 1.90701 1.15376 1.85633 1.47687 1.45913 1.10077 1.05162 1.77810 1.21293 0.94669 0.80778 1.03284 1.22931 0.93830 0.99379 0.86689 1.88014 1.41605 1.59999 1.38691 1.23801 0.87250 0.90163 0.99228 0.90001 1.23199 0.97054 0.98484 1.00652 1.23095 0.92665 0.85436 1.01307 1.88433 1.23143 1.33255 1.85224 1.23833 0.87068 0.96182 0.97543 0.92133 0.89198 0.89283 0.76592 0.89908 0.90654 0.92220 0.91499 0.89061 0.89245 0.90950 0.90872 0.89500 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 12 O -0.52 -11.89 15.86 5.56 0.09 -11.80 16 13 N -0.73 -9.91 5.50 -60.29 -0.33 -10.24 16 14 C 0.12 1.38 6.06 -4.04 -0.02 1.36 16 15 C 0.05 0.38 5.91 37.16 0.22 0.60 16 16 O -0.36 -3.37 10.11 -35.23 -0.36 -3.72 16 17 C 0.05 0.40 3.60 -24.48 -0.09 0.31 16 18 H 0.08 0.49 7.83 -51.92 -0.41 0.08 16 19 C -0.16 -1.06 6.76 -24.78 -0.17 -1.23 16 20 C 0.05 0.35 7.79 37.88 0.30 0.65 16 21 O -0.38 -3.58 11.36 -35.23 -0.40 -3.98 16 22 C 0.03 0.24 7.52 38.19 0.29 0.53 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 25 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 26 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -35.18 324.24 -7.13 -42.31 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.37 Total: -0.66 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 0.86 Total: -3.79 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.40 Total: -35.81 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.67 Total: -19.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.18 -7.13 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885737427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.545 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds