Wall clock time and date at job start Mon Mar 30 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47161 * 33.89655 * 3 2 1 5 5 C 1.36943 * 119.99607 * 269.40421 * 4 3 2 6 6 H 1.08000 * 120.00052 * 348.72178 * 5 4 3 7 7 C 1.38811 * 119.99660 * 168.72640 * 5 4 3 8 8 N 1.31615 * 120.00329 * 0.41658 * 7 5 4 9 9 Si 1.86805 * 119.99828 * 180.41575 * 7 5 4 10 10 H 1.48501 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47129 * 119.99752 * 9 7 5 12 12 H 1.48496 * 109.47413 * 239.99895 * 9 7 5 13 13 C 1.46496 * 120.00428 * 89.40175 * 4 3 2 14 14 C 1.50701 * 109.47283 * 98.20421 * 13 4 3 15 15 C 1.38263 * 119.95856 * 99.47236 * 14 13 4 16 16 C 1.38486 * 120.09675 * 179.97438 * 15 14 13 17 17 C 1.39295 * 119.91832 * 359.97438 * 16 15 14 18 18 C 1.38484 * 119.88363 * 359.95714 * 17 16 15 19 19 C 1.38654 * 119.95511 * 279.19779 * 14 13 4 20 20 O 1.35977 * 119.98875 * 0.02562 * 19 14 13 21 21 O 1.36511 * 108.64000 * 179.97438 * 17 16 15 22 22 C 1.43989 * 105.49783 * 342.70307 * 21 17 16 23 23 O 1.36598 * 131.46456 * 179.97438 * 16 15 14 24 24 H 4.40638 * 5.51383 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46987 * 273.89707 * 3 2 1 26 26 H 1.09004 * 109.47078 * 153.89274 * 3 2 1 27 27 H 0.97004 * 120.00128 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47222 * 218.20708 * 13 4 3 29 29 H 1.09005 * 109.47159 * 338.20499 * 13 4 3 30 30 H 1.08002 * 119.94747 * 0.02562 * 15 14 13 31 31 H 1.08011 * 120.00423 * 179.97438 * 18 17 16 32 32 H 0.96700 * 114.00362 * 95.49086 * 20 19 14 33 33 H 1.08998 * 110.56921 * 268.58857 * 22 21 17 34 34 H 1.08996 * 110.56895 * 145.71818 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1456 -0.7703 5 6 3.3753 -2.3393 -0.1436 6 1 3.3820 -2.3911 0.9351 7 6 3.6103 -3.4825 -0.8949 8 7 3.6103 -3.4178 -2.2095 9 14 3.9267 -5.1132 -0.0401 10 1 3.8731 -4.9194 1.4312 11 1 2.8898 -6.0951 -0.4477 12 1 5.2680 -5.6215 -0.4244 13 6 3.3665 -1.0150 -2.2109 14 6 4.8312 -0.7660 -2.4637 15 6 5.6524 -1.8093 -2.8493 16 6 6.9987 -1.5836 -3.0828 17 6 7.5253 -0.3032 -2.9294 18 6 6.7005 0.7406 -2.5444 19 6 5.3522 0.5103 -2.3148 20 8 4.5417 1.5359 -1.9404 21 8 8.8597 -0.3432 -3.2144 22 6 9.2262 -1.7340 -3.1461 23 8 8.0040 -2.4257 -3.4648 24 1 -1.0498 -0.0002 -0.0003 25 1 3.0094 -0.0690 1.0253 26 1 3.0090 0.9237 -0.4522 27 1 3.7742 -4.2168 -2.7345 28 1 3.0623 -1.9336 -2.7126 29 1 2.7837 -0.1792 -2.5983 30 1 5.2432 -2.8015 -2.9693 31 1 7.1069 1.7341 -2.4245 32 1 4.5481 1.7156 -0.9903 33 1 9.5624 -1.9925 -2.1420 34 1 9.9983 -1.9630 -3.8805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:12 Heat of formation + Delta-G solvation = 25.185404 kcal Electronic energy + Delta-G solvation = -21466.101945 eV Core-core repulsion = 18141.054108 eV Total energy + Delta-G solvation = -3325.047837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -41.56963 -38.69832 -36.11605 -35.71551 -35.17863 -32.77770 -30.91713 -30.16769 -28.66911 -26.35080 -26.01996 -24.74776 -22.46097 -22.10337 -20.64193 -18.41563 -17.64133 -17.34472 -17.00120 -16.72407 -15.87605 -15.36766 -15.10898 -14.46412 -14.01123 -13.85668 -13.55001 -13.50138 -13.29502 -13.03891 -12.48529 -12.33665 -12.00616 -11.76929 -11.27101 -11.10472 -10.88773 -10.51368 -10.29176 -10.09885 -9.84771 -9.70152 -9.53470 -9.25422 -8.90727 -7.99193 -7.29104 -7.12962 -5.62260 -3.40265 1.77315 1.96886 3.19476 3.30018 3.36793 3.39183 3.57050 3.61742 3.90472 4.26473 4.38354 4.85999 4.99433 5.07213 5.16868 5.21399 5.35806 5.63548 5.68319 5.76240 6.09253 6.22531 6.29642 6.36591 6.58923 6.70177 6.73845 6.80034 7.12036 7.21813 7.47500 7.62553 7.78750 7.81743 8.19541 8.41370 8.47071 9.16554 9.68064 10.04625 11.07269 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.008116 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.295730 B = 3449.300636 C = 4886.176565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.165 4.165 3 C 0.234 3.766 4 N -0.582 5.582 5 C -0.218 4.218 6 H 0.078 0.922 7 C -0.013 4.013 8 N -0.910 5.910 9 Si 0.918 3.082 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.145 3.855 14 C -0.057 4.057 15 C -0.056 4.056 16 C 0.002 3.998 17 C 0.017 3.983 18 C -0.146 4.146 19 C 0.098 3.902 20 O -0.490 6.490 21 O -0.320 6.320 22 C 0.214 3.786 23 O -0.313 6.313 24 H 0.203 0.797 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.255 0.745 28 H 0.175 0.825 29 H 0.026 0.974 30 H 0.181 0.819 31 H 0.124 0.876 32 H 0.379 0.621 33 H 0.074 0.926 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 5.101 0.441 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.168 4.168 3 C 0.108 3.892 4 N -0.300 5.300 5 C -0.347 4.347 6 H 0.096 0.904 7 C -0.205 4.205 8 N -0.562 5.562 9 Si 0.748 3.252 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.021 3.979 14 C -0.060 4.060 15 C -0.075 4.075 16 C -0.042 4.042 17 C -0.027 4.027 18 C -0.165 4.165 19 C 0.053 3.947 20 O -0.300 6.300 21 O -0.236 6.236 22 C 0.102 3.898 23 O -0.230 6.230 24 H 0.220 0.780 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.190 0.810 29 H 0.045 0.955 30 H 0.197 0.803 31 H 0.142 0.858 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.298 4.910 -0.361 7.233 hybrid contribution 0.524 -0.698 1.028 1.349 sum 5.822 4.212 0.667 7.217 Atomic orbital electron populations 1.24687 0.95774 1.03610 1.03708 1.25213 0.96237 0.97584 0.97770 1.18187 0.82484 0.91779 0.96777 1.44187 1.73097 1.07822 1.04930 1.19608 1.38242 0.85276 0.91567 0.90402 1.24791 1.02095 0.98114 0.95465 1.68972 1.57369 1.26284 1.03575 0.85926 0.77580 0.83228 0.78455 1.20552 1.21484 1.21477 1.21649 0.86553 1.05316 0.84396 1.21008 1.00756 0.88957 0.95311 1.21386 0.86804 1.04284 0.95022 1.20179 0.92143 0.87408 1.04474 1.19427 0.83360 0.95088 1.04852 1.20003 0.92285 0.97505 1.06703 1.18016 0.87221 0.87660 1.01835 1.84843 1.65347 1.51115 1.28649 1.87245 1.21918 1.27228 1.87256 1.25425 0.88503 0.74269 1.01645 1.87341 1.14187 1.41471 1.79952 0.78010 0.91320 0.91063 0.93218 0.81033 0.95517 0.80274 0.85791 0.76501 0.90826 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.68 19.25 29.55 0.57 -4.11 16 2 C -0.17 -3.27 13.68 -37.12 -0.51 -3.78 16 3 C 0.23 4.49 6.10 -6.83 -0.04 4.44 16 4 N -0.58 -13.26 2.50 -177.94 -0.44 -13.70 16 5 C -0.22 -5.43 9.73 -15.06 -0.15 -5.57 16 6 H 0.08 1.91 7.80 -52.49 -0.41 1.50 16 7 C -0.01 -0.32 5.34 -17.43 -0.09 -0.41 16 8 N -0.91 -22.82 6.07 55.49 0.34 -22.49 16 9 Si 0.92 20.59 29.55 -169.99 -5.02 15.57 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.15 3.33 5.00 -5.20 -0.03 3.30 16 14 C -0.06 -1.24 5.40 -104.46 -0.56 -1.80 16 15 C -0.06 -1.26 9.13 -39.48 -0.36 -1.62 16 16 C 0.00 0.03 7.15 -39.10 -0.28 -0.25 16 17 C 0.02 0.32 7.15 -39.10 -0.28 0.05 16 18 C -0.15 -2.69 10.00 -39.32 -0.39 -3.09 16 19 C 0.10 1.90 6.67 -39.26 -0.26 1.64 16 20 O -0.49 -8.38 11.57 -19.67 -0.23 -8.61 16 21 O -0.32 -5.62 11.40 -45.72 -0.52 -6.14 16 22 C 0.21 3.16 8.89 101.05 0.90 4.06 16 23 O -0.31 -6.01 11.41 -46.01 -0.52 -6.53 16 24 H 0.20 2.85 7.80 -54.10 -0.42 2.43 16 25 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 26 H 0.07 1.20 5.08 -51.93 -0.26 0.93 16 27 H 0.25 6.24 8.21 -40.82 -0.34 5.91 16 28 H 0.17 4.39 4.53 -80.10 -0.36 4.03 16 29 H 0.03 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.18 4.31 4.98 -52.49 -0.26 4.05 16 31 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 32 H 0.38 5.06 7.52 45.56 0.34 5.41 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -28.48 293.28 -6.06 -34.54 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.59 Total: 10.08 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.49 Total: -7.14 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.11 Total: -36.19 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.27 Total: -21.28 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.48 -6.06 -34.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.730 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds