Wall clock time and date at job start Mon Mar 30 2020 01:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00194 * 2 1 4 4 H 1.48505 * 109.47364 * 240.00277 * 3 2 1 5 5 H 1.48501 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47380 * 120.00015 * 3 2 1 7 7 C 1.37876 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00053 * 173.48298 * 7 2 1 9 9 C 1.50703 * 119.99999 * 353.48886 * 7 2 1 10 10 C 1.52997 * 115.54950 * 84.77831 * 9 7 2 11 11 S 1.81397 * 109.47567 * 39.90278 * 10 9 7 12 12 O 1.42102 * 110.54305 * 62.23129 * 11 10 9 13 13 O 1.42102 * 110.54038 * 285.48736 * 11 10 9 14 14 N 1.65593 * 104.45406 * 173.86099 * 11 10 9 15 15 C 1.47071 * 136.05521 * 89.99751 * 14 11 10 16 16 C 1.53498 * 87.98201 * 207.08754 * 15 14 11 17 17 C 1.47066 * 136.06042 * 269.63144 * 14 11 10 18 18 H 1.08999 * 113.46620 * 267.69370 * 17 14 11 19 19 C 1.53008 * 113.46584 * 38.13265 * 17 14 11 20 20 O 1.42895 * 109.47145 * 65.00165 * 19 17 14 21 21 C 1.52998 * 117.51849 * 230.47935 * 9 7 2 22 22 C 1.53003 * 60.00144 * 107.47852 * 21 9 7 23 23 H 0.97007 * 119.99763 * 5.02736 * 1 2 3 24 24 H 1.09009 * 109.47231 * 279.89871 * 10 9 7 25 25 H 1.09000 * 109.46987 * 159.90473 * 10 9 7 26 26 H 1.08999 * 113.46762 * 321.86303 * 15 14 11 27 27 H 1.08995 * 113.46937 * 92.31064 * 15 14 11 28 28 H 1.09006 * 114.20846 * 87.52374 * 16 15 14 29 29 H 1.09006 * 114.20816 * 220.14342 * 16 15 14 30 30 H 1.08996 * 109.46660 * 185.00259 * 19 17 14 31 31 H 1.09003 * 109.46814 * 304.99801 * 19 17 14 32 32 H 0.96693 * 113.99902 * 180.02562 * 20 19 17 33 33 H 1.08997 * 117.49911 * 214.96822 * 21 9 7 34 34 H 1.09003 * 117.49984 * 359.97438 * 21 9 7 35 35 H 1.08997 * 117.50107 * 252.51439 * 22 21 9 36 36 H 1.09000 * 117.49658 * 107.48606 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0792 -1.1971 -0.1067 9 6 1.2582 -2.4950 0.1469 10 6 0.6880 -3.0790 -1.1472 11 16 1.8822 -2.8475 -2.4929 12 8 3.0883 -3.5456 -2.2148 13 8 1.9017 -1.4905 -2.9142 14 7 1.2240 -3.6637 -3.7745 15 6 0.3136 -3.3378 -4.8827 16 6 -0.1044 -4.8147 -4.9018 17 6 1.2977 -5.0317 -4.3094 18 1 2.0727 -5.1612 -5.0648 19 6 1.3426 -6.1088 -3.2236 20 8 0.1133 -6.1023 -2.4951 21 6 1.7563 -3.4795 1.2068 22 6 0.4549 -2.7070 1.4317 23 1 -0.4850 0.8369 -0.0736 24 1 -0.2432 -2.5699 -1.3962 25 1 0.4952 -4.1432 -1.0116 26 1 -0.4927 -2.6621 -4.5976 27 1 0.8292 -3.0209 -5.7892 28 1 -0.9224 -5.0565 -4.2230 29 1 -0.2375 -5.2286 -5.9013 30 1 1.4856 -7.0853 -3.6863 31 1 2.1694 -5.9045 -2.5433 32 1 0.0714 -6.7612 -1.7887 33 1 1.6777 -4.5432 0.9823 34 1 2.6243 -3.1865 1.7976 35 1 0.4666 -1.9056 2.1705 36 1 -0.4798 -3.2624 1.3550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907829815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:53 Heat of formation + Delta-G solvation = -85.641220 kcal Electronic energy + Delta-G solvation = -20904.782773 eV Core-core repulsion = 17710.373085 eV Total energy + Delta-G solvation = -3194.409688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50267 -38.56089 -37.87518 -36.99969 -36.69299 -34.13749 -29.93409 -29.75980 -29.21765 -27.50266 -23.92194 -22.99031 -22.21981 -21.14322 -19.60128 -18.76674 -18.26025 -17.76838 -17.19355 -16.94067 -16.58438 -16.10783 -15.75804 -15.46637 -15.01821 -14.50986 -14.36524 -13.87143 -13.73175 -13.54748 -13.20613 -13.08866 -12.95602 -12.86578 -12.81655 -12.76664 -12.44959 -12.10923 -11.91729 -11.72931 -11.53756 -11.24557 -10.95240 -10.80767 -10.54219 -10.10959 -9.78480 -8.26069 -6.44416 -0.47513 1.31915 1.36844 1.42457 2.04268 2.36371 3.02919 3.11645 3.24039 3.35918 3.42805 3.69271 3.82662 4.11258 4.14124 4.25567 4.45906 4.52472 4.57526 4.60182 4.68956 4.72453 4.77409 4.85851 4.94911 5.09497 5.13443 5.22949 5.38699 5.47396 5.58414 5.64391 5.76944 6.17484 6.64632 6.96097 7.33070 8.80789 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.007781 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.251724 B = 3597.566533 C = 4121.469031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.056 3.944 3 Si 0.927 3.073 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.561 4.561 8 H 0.046 0.954 9 C 0.011 3.989 10 C -0.536 4.536 11 S 2.650 3.350 12 O -1.002 7.002 13 O -0.997 6.997 14 N -1.058 6.058 15 C 0.110 3.890 16 C -0.116 4.116 17 C 0.139 3.861 18 H 0.122 0.878 19 C 0.051 3.949 20 O -0.578 6.578 21 C -0.186 4.186 22 C -0.140 4.140 23 H 0.267 0.733 24 H 0.110 0.890 25 H 0.134 0.866 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.395 0.605 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -14.267 -8.884 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.149 4.149 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.598 4.598 8 H 0.064 0.936 9 C 0.009 3.991 10 C -0.669 4.669 11 S 2.752 3.248 12 O -0.993 6.993 13 O -0.987 6.987 14 N -0.898 5.898 15 C -0.015 4.015 16 C -0.155 4.155 17 C 0.034 3.966 18 H 0.139 0.861 19 C -0.028 4.028 20 O -0.387 6.387 21 C -0.223 4.223 22 C -0.178 4.178 23 H 0.076 0.924 24 H 0.129 0.871 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.245 0.755 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.319 -13.055 -9.089 16.076 hybrid contribution 0.196 0.766 0.893 1.193 sum -2.123 -12.289 -8.196 14.923 Atomic orbital electron populations 1.69992 1.06698 1.28051 1.47134 1.25486 0.95587 1.01646 0.92195 0.86083 0.79558 0.80227 0.78943 1.20673 1.19248 1.18496 1.20726 0.92839 0.90985 1.55273 0.93583 1.18350 1.00476 0.94021 0.86231 1.29737 1.14960 1.08351 1.13853 1.03406 0.75045 0.71920 0.74422 1.93385 1.44529 1.75369 1.86036 1.93437 1.87241 1.36812 1.81219 1.60361 1.65071 1.24558 1.39854 1.22686 0.91234 0.99254 0.88329 1.23423 0.95768 0.93312 1.02986 1.22713 1.00079 0.79366 0.94476 0.86094 1.22506 0.86382 0.99711 0.94194 1.86450 1.36896 1.63300 1.52037 1.23182 0.97895 0.96765 1.04488 1.22457 0.93737 1.00994 1.00653 0.92376 0.87110 0.84796 0.91517 0.88688 0.88200 0.86452 0.88167 0.94385 0.75468 0.88042 0.90124 0.91670 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.28 12.94 21.45 0.28 -51.00 16 2 C 0.06 3.24 5.39 84.65 0.46 3.70 16 3 Si 0.93 46.52 29.55 68.60 2.03 48.54 16 4 H -0.28 -14.63 7.11 99.48 0.71 -13.93 16 5 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.56 -32.71 6.89 25.60 0.18 -32.54 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 9 C 0.01 0.57 1.64 -52.93 -0.09 0.48 16 10 C -0.54 -24.00 6.29 71.98 0.45 -23.54 16 11 S 2.65 122.83 5.02 -56.49 -0.28 122.55 16 12 O -1.00 -49.40 17.37 -127.65 -2.22 -51.62 16 13 O -1.00 -55.37 17.21 -127.65 -2.20 -57.56 16 14 N -1.06 -35.70 3.93 -526.44 -2.07 -37.76 16 15 C 0.11 2.86 8.68 83.18 0.72 3.58 16 16 C -0.12 -2.16 7.85 31.01 0.24 -1.91 16 17 C 0.14 3.23 4.61 41.88 0.19 3.43 16 18 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 19 C 0.05 1.06 7.29 71.98 0.52 1.59 16 20 O -0.58 -12.03 11.16 -148.98 -1.66 -13.69 16 21 C -0.19 -8.06 9.88 30.59 0.30 -7.75 16 22 C -0.14 -6.44 9.48 30.60 0.29 -6.15 16 23 H 0.27 14.73 8.32 -92.70 -0.77 13.96 16 24 H 0.11 5.22 8.14 -2.39 -0.02 5.20 16 25 H 0.13 4.98 6.96 -2.39 -0.02 4.97 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.05 6.95 -2.38 -0.02 2.03 16 29 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.00 7.43 -2.39 -0.02 0.98 16 32 H 0.40 4.93 9.12 -74.06 -0.68 4.26 16 33 H 0.10 3.66 8.08 -2.39 -0.02 3.65 16 34 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -78.01 314.44 -2.44 -80.45 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.41 Total: 19.22 kcal Atomic # 6 Polarization: -62.39 SS G_CDS: 3.27 Total: -59.12 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -1.79 Total: -88.76 kcal Atomic # 8 Polarization: -116.80 SS G_CDS: -6.08 Total: -122.87 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 122.83 SS G_CDS: -0.28 Total: 122.55 kcal Total: -78.01 -2.44 -80.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907829815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.195 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds