Wall clock time and date at job start Mon Mar 30 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86793 * 120.00201 * 2 1 4 4 H 1.48494 * 109.47399 * 270.00718 * 3 2 1 5 5 H 1.48510 * 109.47111 * 30.00662 * 3 2 1 6 6 H 1.48501 * 109.47357 * 150.00409 * 3 2 1 7 7 C 1.38755 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00068 * 359.97438 * 7 2 1 9 9 O 1.34922 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.53004 * 109.47220 * 179.72718 * 12 10 9 14 14 H 1.09000 * 109.46343 * 54.97098 * 13 12 10 15 15 C 1.52909 * 109.45950 * 295.00026 * 13 12 10 16 16 C 1.50497 * 109.90516 * 288.54890 * 15 13 12 17 17 O 1.21290 * 119.61531 * 144.81910 * 16 15 13 18 18 N 1.34560 * 120.76816 * 324.84168 * 16 15 13 19 19 C 1.39815 * 120.45708 * 0.76726 * 18 16 15 20 20 C 1.38862 * 120.19712 * 198.51298 * 19 18 16 21 21 C 1.38103 * 119.89882 * 179.97438 * 20 19 18 22 22 C 1.38309 * 120.08719 * 0.02680 * 21 20 19 23 23 C 1.38282 * 120.14648 * 359.97438 * 22 21 20 24 24 C 1.38098 * 120.03288 * 0.04980 * 23 22 21 25 25 H 0.97002 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47536 * 299.72288 * 12 10 9 27 27 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 28 28 H 1.08999 * 109.40206 * 48.67902 * 15 13 12 29 29 H 1.09003 * 109.40196 * 168.50558 * 15 13 12 30 30 H 0.97003 * 119.77190 * 180.79525 * 18 16 15 31 31 H 1.08005 * 120.04629 * 359.94023 * 20 19 18 32 32 H 1.07996 * 119.95866 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.92456 * 179.97438 * 22 21 20 34 34 H 1.08005 * 119.98007 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4459 2.6526 0.7002 6 1 3.5460 1.4401 0.6999 7 6 2.0082 -1.2017 -0.0005 8 1 1.4681 -2.1370 -0.0005 9 8 3.3574 -1.2017 -0.0011 10 6 3.9671 -2.3984 -0.0010 11 8 3.3069 -3.4150 -0.0010 12 6 5.4720 -2.4773 0.0048 13 6 5.9059 -3.9445 0.0104 14 1 5.4463 -4.4624 -0.8314 15 6 5.4612 -4.6021 1.3173 16 6 6.2944 -4.0867 2.4597 17 8 5.7868 -3.9342 3.5507 18 7 7.5958 -3.7927 2.2847 19 6 8.1947 -3.9463 1.0307 20 6 9.5770 -4.0199 0.9212 21 6 10.1621 -4.1722 -0.3205 22 6 9.3731 -4.2507 -1.4538 23 6 7.9963 -4.1777 -1.3479 24 6 7.4055 -4.0250 -0.1091 25 1 -0.4850 0.8401 0.0004 26 1 5.8651 -1.9857 -0.8852 27 1 5.8585 -1.9807 0.8947 28 1 4.4122 -4.3700 1.5008 29 1 5.5847 -5.6824 1.2394 30 1 8.1222 -3.4724 3.0339 31 1 10.1937 -3.9577 1.8057 32 1 11.2370 -4.2299 -0.4068 33 1 9.8334 -4.3694 -2.4235 34 1 7.3827 -4.2398 -2.2346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909632621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:46 Heat of formation + Delta-G solvation = -118.185345 kcal Electronic energy + Delta-G solvation = -20858.904137 eV Core-core repulsion = 17527.639278 eV Total energy + Delta-G solvation = -3331.264859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34010 -41.06147 -39.70579 -37.80200 -36.35911 -35.61564 -34.51489 -31.31384 -30.40398 -30.14688 -27.47048 -24.86773 -23.71837 -23.52156 -21.78800 -20.21234 -19.74680 -19.05780 -18.61633 -18.07931 -17.48340 -16.88452 -16.62651 -16.26740 -15.97048 -15.53556 -15.37643 -14.74164 -14.72327 -14.51516 -14.35015 -14.17778 -13.76955 -13.61258 -13.12642 -12.77743 -12.47820 -12.38538 -12.23840 -12.11266 -11.97153 -11.86037 -11.70492 -11.18320 -11.02190 -10.84366 -9.75663 -9.01544 -8.56145 -6.42575 0.21630 0.43284 1.26501 1.31310 1.44136 1.50176 1.54879 1.97880 2.24780 2.37866 2.88732 2.89882 3.34978 3.51607 3.62072 3.80043 3.96191 4.19582 4.25664 4.35902 4.47288 4.51848 4.53633 4.66355 4.70580 4.93933 4.96892 5.11094 5.24243 5.48775 5.52580 5.66956 5.75085 5.87942 5.91080 6.16203 6.52423 6.81481 6.89130 7.57198 8.56924 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.004917 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.933133 B = 5693.703590 C = 6055.964762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.982 3.018 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.408 4.408 8 H 0.059 0.941 9 O -0.262 6.262 10 C 0.408 3.592 11 O -0.562 6.562 12 C -0.090 4.090 13 C -0.019 4.019 14 H 0.109 0.891 15 C -0.143 4.143 16 C 0.522 3.478 17 O -0.573 6.573 18 N -0.653 5.653 19 C 0.144 3.856 20 C -0.150 4.150 21 C -0.085 4.085 22 C -0.137 4.137 23 C -0.082 4.082 24 C -0.127 4.127 25 H 0.289 0.711 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.418 0.582 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.005 -6.244 -3.337 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.801 3.199 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.484 4.484 8 H 0.077 0.923 9 O -0.172 6.172 10 C 0.255 3.745 11 O -0.457 6.457 12 C -0.127 4.127 13 C -0.038 4.038 14 H 0.127 0.873 15 C -0.182 4.182 16 C 0.311 3.689 17 O -0.452 6.452 18 N -0.297 5.297 19 C 0.050 3.950 20 C -0.170 4.170 21 C -0.103 4.103 22 C -0.156 4.156 23 C -0.100 4.100 24 C -0.129 4.129 25 H 0.099 0.901 26 H 0.151 0.849 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.257 0.743 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 25.191 -6.371 -2.839 26.138 hybrid contribution -0.667 0.461 0.654 1.042 sum 24.523 -5.910 -2.185 25.320 Atomic orbital electron populations 1.69706 1.07541 1.30171 1.48290 1.25566 0.95980 1.02699 0.94221 0.85103 0.78817 0.75952 0.80010 1.17819 1.19086 1.17948 1.20336 0.77783 0.95822 1.54454 0.92270 1.83531 1.22065 1.33182 1.78390 1.24288 0.92912 0.81421 0.75845 1.90558 1.68445 1.36772 1.49969 1.21387 0.85413 0.99343 1.06585 1.19709 0.92479 0.93384 0.98196 0.87267 1.21895 1.00360 1.03621 0.92364 1.20996 0.82441 0.75735 0.89689 1.90754 1.71985 1.53674 1.28821 1.43491 1.10216 1.64236 1.11775 1.17884 0.93142 1.00494 0.83529 1.21051 0.91081 1.04576 1.00316 1.21376 1.01490 0.96433 0.91046 1.21469 0.92870 1.01001 1.00226 1.21139 0.95980 0.97092 0.95820 1.19330 0.92821 1.07253 0.93512 0.90109 0.84878 0.88920 0.89256 0.85852 0.74269 0.83401 0.82558 0.83110 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.51 13.96 21.62 0.30 -56.21 16 2 C 0.02 0.90 5.49 84.88 0.47 1.37 16 3 Si 0.98 44.60 28.62 68.60 1.96 46.57 16 4 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.41 -25.61 10.10 67.94 0.69 -24.92 16 8 H 0.06 4.20 7.09 -2.91 -0.02 4.18 16 9 O -0.26 -14.25 8.58 14.85 0.13 -14.12 16 10 C 0.41 19.17 7.52 71.23 0.54 19.71 16 11 O -0.56 -29.57 13.29 20.77 0.28 -29.29 16 12 C -0.09 -2.87 5.20 29.85 0.16 -2.71 16 13 C -0.02 -0.51 2.06 -11.58 -0.02 -0.54 16 14 H 0.11 2.88 7.87 -2.39 -0.02 2.87 16 15 C -0.14 -4.45 5.29 29.75 0.16 -4.30 16 16 C 0.52 16.49 6.97 87.63 0.61 17.10 16 17 O -0.57 -23.22 17.91 -3.06 -0.05 -23.28 16 18 N -0.65 -14.80 5.36 -304.09 -1.63 -16.43 16 19 C 0.14 2.76 6.50 38.17 0.25 3.01 16 20 C -0.15 -1.96 9.92 22.39 0.22 -1.74 16 21 C -0.09 -0.86 10.04 22.25 0.22 -0.64 16 22 C -0.14 -1.53 10.04 22.30 0.22 -1.30 16 23 C -0.08 -1.26 9.69 22.25 0.22 -1.04 16 24 C -0.13 -2.57 4.91 -19.77 -0.10 -2.67 16 25 H 0.29 16.04 8.31 -92.71 -0.77 15.27 16 26 H 0.13 3.42 8.14 -2.38 -0.02 3.40 16 27 H 0.09 2.94 7.50 -2.39 -0.02 2.92 16 28 H 0.09 3.60 5.83 -2.39 -0.01 3.59 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.42 7.74 8.83 -92.71 -0.82 6.92 16 31 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -80.73 296.73 4.93 -75.79 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.33 Total: 15.65 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 3.62 Total: 1.33 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.33 Total: -72.65 kcal Atomic # 8 Polarization: -67.04 SS G_CDS: 0.35 Total: -66.70 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.96 Total: 46.57 kcal Total: -80.73 4.93 -75.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909632621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.391 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds