Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48496 * 109.47555 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47426 * 300.00322 * 3 2 1 6 6 H 1.48504 * 109.47081 * 60.00048 * 3 2 1 7 7 C 1.38796 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99766 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00203 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99725 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00388 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00328 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47480 * 179.97438 * 14 13 11 16 16 N 1.46908 * 109.46707 * 64.99833 * 15 14 13 17 17 C 1.47024 * 110.99261 * 46.32476 * 16 15 14 18 18 C 1.53103 * 109.24985 * 182.34870 * 17 16 15 19 19 O 1.43012 * 109.29295 * 303.21723 * 18 17 16 20 20 C 1.43011 * 113.74271 * 58.65008 * 19 18 17 21 21 C 1.47018 * 110.99661 * 170.00016 * 16 15 14 22 22 H 0.97003 * 119.99564 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47269 * 59.99851 * 10 9 7 24 24 H 1.08994 * 109.46775 * 300.00357 * 10 9 7 25 25 H 1.09006 * 109.47017 * 60.00020 * 14 13 11 26 26 H 1.08999 * 109.47477 * 300.00462 * 14 13 11 27 27 H 1.09003 * 109.46906 * 305.00347 * 15 14 13 28 28 H 1.08999 * 109.47302 * 184.99846 * 15 14 13 29 29 H 1.08998 * 109.47369 * 62.43595 * 17 16 15 30 30 H 1.08998 * 109.54483 * 302.29802 * 17 16 15 31 31 H 1.09002 * 109.50635 * 183.25881 * 18 17 16 32 32 H 1.09003 * 109.50698 * 63.17493 * 18 17 16 33 33 H 1.08997 * 109.50806 * 61.26171 * 20 19 18 34 34 H 1.08997 * 109.50924 * 181.35636 * 20 19 18 35 35 H 1.08994 * 109.50209 * 57.67478 * 21 16 15 36 36 H 1.08997 * 109.50514 * 297.54292 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8916 2.3966 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7956 -5.5015 0.0010 13 8 2.8407 -6.3389 -0.0003 14 6 2.2610 -7.6701 -0.0002 15 6 3.3800 -8.7136 -0.0014 16 7 4.1383 -8.6198 1.2534 17 6 3.2345 -8.5372 2.4101 18 6 4.0631 -8.3820 3.6881 19 8 4.9794 -9.4751 3.7927 20 6 5.8749 -9.5841 2.6831 21 6 5.0648 -9.7525 1.3949 22 1 -0.4850 0.8401 -0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1244 -3.7313 -0.8905 25 1 1.6445 -7.7980 -0.8901 26 1 1.6451 -7.7982 0.8899 27 1 4.0471 -8.5301 -0.8437 28 1 2.9474 -9.7101 -0.0909 29 1 2.6382 -9.4476 2.4711 30 1 2.5753 -7.6765 2.2970 31 1 3.4004 -8.3785 4.5534 32 1 4.6178 -7.4445 3.6506 33 1 6.4823 -8.6816 2.6156 34 1 6.5229 -10.4494 2.8219 35 1 5.7409 -9.7785 0.5404 36 1 4.4983 -10.6826 1.4402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915130052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = -144.679158 kcal Electronic energy + Delta-G solvation = -18992.036455 eV Core-core repulsion = 15795.066689 eV Total energy + Delta-G solvation = -3196.969765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54451 -40.48375 -37.91751 -36.59980 -34.60831 -32.38806 -31.87562 -30.69708 -27.75726 -27.39272 -25.10871 -23.41743 -22.38704 -21.18999 -19.90156 -18.67711 -18.18539 -17.42442 -17.15140 -16.91943 -16.85976 -16.18937 -16.04127 -15.92721 -15.76944 -15.27085 -14.61168 -14.57574 -14.10391 -13.71821 -13.41977 -13.17933 -13.11479 -12.91732 -12.89994 -12.63696 -12.38210 -12.09494 -11.75862 -11.58101 -11.56668 -11.50923 -11.17138 -10.69433 -10.37131 -9.39522 -8.73112 -8.37446 -6.16917 1.04269 1.14914 1.41874 1.42463 1.56887 1.91909 2.24131 2.67813 2.93448 2.97767 3.27020 3.60438 3.85113 3.88818 3.94599 4.03284 4.15337 4.18620 4.24464 4.28504 4.34434 4.45730 4.52623 4.60970 4.71054 4.77307 4.78212 4.88953 5.00323 5.30053 5.41750 5.86903 5.92394 6.15346 6.18654 6.72550 7.04608 8.72047 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.003389 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.692774 B = 8260.319426 C = 8699.559275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.085 0.915 9 S -0.138 6.138 10 C -0.107 4.107 11 C 0.487 3.513 12 O -0.524 6.524 13 O -0.338 6.338 14 C 0.054 3.946 15 C 0.064 3.936 16 N -0.548 5.548 17 C 0.013 3.987 18 C 0.063 3.937 19 O -0.403 6.403 20 C 0.058 3.942 21 C 0.020 3.980 22 H 0.272 0.728 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.038 -19.931 2.521 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.089 5.911 10 C -0.256 4.256 11 C 0.330 3.670 12 O -0.413 6.413 13 O -0.254 6.254 14 C -0.020 4.020 15 C -0.063 4.063 16 N -0.275 5.275 17 C -0.115 4.115 18 C -0.013 4.013 19 O -0.322 6.322 20 C -0.019 4.019 21 C -0.108 4.108 22 H 0.081 0.919 23 H 0.137 0.863 24 H 0.138 0.862 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.699 -19.850 2.659 22.706 hybrid contribution 0.639 0.668 -0.250 0.958 sum 11.338 -19.182 2.409 22.412 Atomic orbital electron populations 1.70172 1.07918 1.28716 1.47815 1.26113 0.95982 1.03259 0.93538 0.84885 0.78606 0.76209 0.78129 1.18083 1.19863 1.19862 1.23229 0.95495 0.91623 1.59192 0.89687 1.85493 1.09335 0.99087 1.97155 1.23061 1.04114 0.90366 1.08051 1.22970 0.84782 0.87591 0.71677 1.90659 1.18367 1.86204 1.46082 1.86582 1.39692 1.15487 1.83673 1.23471 0.96818 0.78544 1.03167 1.22253 0.94739 0.96042 0.93240 1.62242 1.19575 1.43780 1.01854 1.22849 0.95559 1.01494 0.91593 1.22699 0.91763 0.89628 0.97249 1.87951 1.49104 1.50867 1.44303 1.22847 0.91470 1.03142 0.84400 1.22854 0.96328 0.91367 1.00212 0.91851 0.86348 0.86222 0.90038 0.91108 0.88128 0.90067 0.93437 0.90485 0.87280 0.92750 0.92546 0.86290 0.87764 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.65 0.29 -54.53 16 2 C 0.02 0.90 5.49 84.86 0.47 1.37 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.55 -30.80 9.50 67.95 0.65 -30.15 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.14 -7.47 20.57 -56.49 -1.16 -8.63 16 10 C -0.11 -4.33 6.27 71.23 0.45 -3.88 16 11 C 0.49 18.34 7.98 71.23 0.57 18.91 16 12 O -0.52 -23.00 15.61 21.95 0.34 -22.66 16 13 O -0.34 -10.18 10.17 -51.40 -0.52 -10.70 16 14 C 0.05 1.25 4.95 71.98 0.36 1.61 16 15 C 0.06 1.08 5.67 86.30 0.49 1.57 16 16 N -0.55 -10.38 4.83 -895.15 -4.32 -14.70 16 17 C 0.01 0.26 4.94 86.31 0.43 0.69 16 18 C 0.06 1.24 7.01 72.02 0.50 1.74 16 19 O -0.40 -8.24 10.83 -148.98 -1.61 -9.86 16 20 C 0.06 0.88 7.01 72.02 0.50 1.38 16 21 C 0.02 0.28 5.63 86.31 0.49 0.77 16 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 23 H 0.12 4.39 8.14 -2.39 -0.02 4.38 16 24 H 0.12 4.40 8.14 -2.40 -0.02 4.38 16 25 H 0.08 1.82 8.13 -2.38 -0.02 1.80 16 26 H 0.07 1.70 5.94 -2.39 -0.01 1.69 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.76 5.95 -2.39 -0.01 1.74 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -71.17 316.19 0.99 -70.18 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.07 Total: 11.89 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.89 Total: -6.00 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -4.04 Total: -69.23 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.79 Total: -43.22 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.16 Total: -8.63 kcal Total: -71.17 0.99 -70.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915130052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.502 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds