Wall clock time and date at job start Mon Mar 30 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46974 * 2 1 4 4 H 1.09004 * 109.47173 * 304.99291 * 3 2 1 5 5 C 1.50708 * 109.46932 * 184.99795 * 3 2 1 6 6 H 1.07999 * 119.99899 * 239.99316 * 5 3 2 7 7 C 1.37881 * 119.99978 * 59.99720 * 5 3 2 8 8 N 1.31511 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00045 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47071 * 90.00153 * 9 7 5 11 11 H 1.48496 * 109.47088 * 210.00426 * 9 7 5 12 12 H 1.48499 * 109.46994 * 329.99869 * 9 7 5 13 13 O 1.45195 * 109.47589 * 64.99936 * 3 2 1 14 14 C 1.34831 * 116.99843 * 269.99851 * 13 3 2 15 15 O 1.21551 * 120.00022 * 0.02562 * 14 13 3 16 16 C 1.47011 * 120.00202 * 179.97438 * 14 13 3 17 17 C 1.35839 * 125.14357 * 180.61767 * 16 14 13 18 18 C 1.46390 * 106.13425 * 180.02562 * 17 16 14 19 19 N 1.32952 * 133.88069 * 179.26233 * 18 17 16 20 20 C 1.31427 * 121.38566 * 180.02562 * 19 18 17 21 21 C 1.38878 * 121.18762 * 359.97438 * 20 19 18 22 22 C 1.38208 * 119.70960 * 0.02562 * 21 20 19 23 23 C 1.39314 * 118.33591 * 0.27652 * 22 21 20 24 24 O 1.34573 * 133.41458 * 179.69344 * 23 22 21 25 25 H 1.08998 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47203 * 300.00094 * 1 2 3 27 27 H 1.09002 * 109.47107 * 60.00365 * 1 2 3 28 28 H 1.08997 * 109.46951 * 239.99417 * 2 1 3 29 29 H 1.09007 * 109.46765 * 119.99959 * 2 1 3 30 30 H 0.97003 * 119.99893 * 179.97438 * 8 7 5 31 31 H 1.08009 * 126.92587 * 359.37767 * 17 16 14 32 32 H 1.07998 * 119.40509 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.14733 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.82787 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8782 -1.2279 8 7 3.4063 0.3364 -2.1727 9 14 6.0051 0.8798 -1.3810 10 1 6.5538 -0.3522 -0.7596 11 1 6.3836 0.9212 -2.8163 12 1 6.5576 2.0718 -0.6888 13 8 1.6559 2.0917 1.2406 14 6 0.4674 2.7283 1.2559 15 8 -0.2287 2.7398 0.2595 16 6 0.0130 3.4076 2.4779 17 6 -1.1663 4.0680 2.6129 18 6 -1.1914 4.5796 3.9843 19 7 -2.0630 5.3002 4.6832 20 6 -1.8308 5.6308 5.9339 21 6 -0.6636 5.2393 6.5764 22 6 0.2752 4.4888 5.8941 23 6 0.0157 4.1528 4.5672 24 8 0.6983 3.4582 3.6385 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.8294 -0.0615 -2.9497 31 1 -1.9268 4.1991 1.8572 32 1 -2.5609 6.2175 6.4716 33 1 -0.4898 5.5207 7.6045 34 1 1.1894 4.1749 6.3760 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122897088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:04 Heat of formation + Delta-G solvation = -64.826540 kcal Electronic energy + Delta-G solvation = -20514.658908 eV Core-core repulsion = 17185.707861 eV Total energy + Delta-G solvation = -3328.951047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.89104 -41.43520 -39.93410 -37.90856 -35.59770 -34.38008 -33.41918 -32.68818 -31.34012 -29.40839 -26.70018 -25.12535 -24.51309 -23.36194 -22.37424 -21.68414 -19.94727 -18.90466 -18.64628 -18.00500 -17.90306 -17.37456 -16.90002 -16.70085 -16.33201 -15.09397 -14.86827 -14.81541 -14.51860 -14.38222 -14.15926 -14.06331 -13.62487 -13.50274 -13.36686 -13.20948 -12.87813 -12.59770 -12.19596 -11.98486 -11.77422 -11.73323 -11.48417 -10.92137 -10.58944 -10.57236 -10.22138 -9.87243 -8.30538 -6.47707 -0.82935 0.02537 0.48887 1.01425 1.41570 1.43226 1.54243 1.65259 1.79372 2.36872 2.63469 2.94685 2.99887 3.24704 3.55978 3.72843 3.91536 4.11470 4.24781 4.33366 4.34947 4.44554 4.49063 4.63075 4.75439 4.89677 4.99840 5.02839 5.14551 5.22768 5.28423 5.45731 5.60327 5.68695 5.81653 6.01073 6.49223 6.72279 6.73793 7.22394 8.76382 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.004173 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.017128 B = 6707.914148 C = 7315.483941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 C 0.223 3.777 4 H 0.018 0.982 5 C -0.555 4.555 6 H 0.064 0.936 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.268 1.268 13 O -0.351 6.351 14 C 0.535 3.465 15 O -0.501 6.501 16 C -0.003 4.003 17 C -0.089 4.089 18 C 0.034 3.966 19 N -0.466 5.466 20 C 0.104 3.896 21 C -0.112 4.112 22 C -0.067 4.067 23 C -0.002 4.002 24 O -0.180 6.180 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.273 0.727 31 H 0.190 0.810 32 H 0.210 0.790 33 H 0.205 0.795 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 8.299 18.025 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.170 3.830 4 H 0.036 0.964 5 C -0.592 4.592 6 H 0.082 0.918 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.805 3.195 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.193 1.193 13 O -0.267 6.267 14 C 0.379 3.621 15 O -0.392 6.392 16 C -0.053 4.053 17 C -0.109 4.109 18 C -0.094 4.094 19 N -0.176 5.176 20 C -0.062 4.062 21 C -0.131 4.131 22 C -0.093 4.093 23 C -0.052 4.052 24 O -0.080 6.080 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.207 0.793 32 H 0.226 0.774 33 H 0.222 0.778 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.174 8.268 17.069 20.652 hybrid contribution 1.436 -0.472 -0.492 1.590 sum -6.738 7.796 16.577 19.519 Atomic orbital electron populations 1.21754 0.96142 1.01039 1.00154 1.21907 0.94612 0.97684 1.02695 1.20638 0.94975 0.89565 0.77792 0.96396 1.21289 0.90212 1.40548 1.07168 0.91801 1.25764 1.04271 0.93661 0.94167 1.69989 1.37477 1.37548 1.09813 0.85199 0.77557 0.79073 0.77697 1.19147 1.20023 1.19250 1.86642 1.34050 1.62420 1.43558 1.19592 0.80845 0.76362 0.85307 1.90876 1.55902 1.59110 1.33323 1.20704 0.93694 1.05611 0.85262 1.22701 0.96186 0.96342 0.95687 1.20516 0.92778 1.01561 0.94507 1.67058 1.30605 1.10486 1.09471 1.23754 0.97515 0.96447 0.88501 1.22710 0.92287 0.94909 1.03241 1.21129 1.02931 0.97917 0.87299 1.21305 0.93107 0.97349 0.93482 1.84095 1.43792 1.61583 1.18569 0.91590 0.94929 0.93835 0.88880 0.93563 0.91807 0.79286 0.77377 0.77827 0.80823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.56 71.98 0.62 -5.26 16 2 C -0.13 -6.64 5.49 30.59 0.17 -6.47 16 3 C 0.22 12.30 2.25 29.85 0.07 12.37 16 4 H 0.02 1.10 7.16 -2.38 -0.02 1.09 16 5 C -0.55 -31.85 8.90 25.60 0.23 -31.62 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -51.58 11.29 21.45 0.24 -51.34 16 9 Si 0.98 42.88 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 O -0.35 -17.84 9.82 -55.71 -0.55 -18.39 16 14 C 0.53 24.15 6.40 70.12 0.45 24.60 16 15 O -0.50 -23.82 14.01 19.67 0.28 -23.54 16 16 C 0.00 -0.11 7.11 24.01 0.17 0.06 16 17 C -0.09 -2.87 10.81 23.84 0.26 -2.61 16 18 C 0.03 0.98 7.52 41.69 0.31 1.30 16 19 N -0.47 -11.35 10.41 -185.14 -1.93 -13.28 16 20 C 0.10 1.46 11.17 84.91 0.95 2.41 16 21 C -0.11 -1.15 10.09 22.42 0.23 -0.92 16 22 C -0.07 -1.15 10.19 22.52 0.23 -0.92 16 23 C 0.00 -0.05 7.42 23.13 0.17 0.12 16 24 O -0.18 -6.40 10.59 -10.22 -0.11 -6.51 16 25 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.03 1.39 6.06 -2.39 -0.01 1.37 16 27 H 0.04 1.99 7.79 -2.39 -0.02 1.97 16 28 H 0.09 5.08 5.95 -2.39 -0.01 5.06 16 29 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.19 5.46 8.06 -2.91 -0.02 5.44 16 32 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -71.07 299.78 5.39 -65.69 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.13 Total: 7.78 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.29 Total: -5.32 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -1.69 Total: -64.62 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.38 Total: -48.44 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.07 5.39 -65.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122897088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.861 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds