Wall clock time and date at job start Mon Mar 30 2020 01:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48492 * 109.47335 * 239.99828 * 3 2 1 5 5 H 1.48502 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47122 * 119.99474 * 3 2 1 7 7 C 1.37873 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00361 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47175 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47091 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47279 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99954 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00107 * 180.02562 * 13 12 11 16 16 C 1.52989 * 109.47268 * 179.97438 * 15 13 12 17 17 C 1.53046 * 113.15245 * 275.37017 * 16 15 13 18 18 S 1.81421 * 89.89146 * 211.85103 * 17 16 15 19 19 O 1.42100 * 112.75626 * 280.47671 * 18 17 16 20 20 O 1.42102 * 112.75037 * 136.72699 * 18 17 16 21 21 C 1.53046 * 113.15293 * 174.99935 * 16 15 13 22 22 H 0.96994 * 120.00195 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46469 * 59.99889 * 9 7 2 24 24 H 1.08998 * 109.46788 * 300.00629 * 9 7 2 25 25 H 1.08997 * 109.47640 * 60.00043 * 10 9 7 26 26 H 1.09007 * 109.47517 * 299.99934 * 10 9 7 27 27 H 1.09001 * 109.46856 * 60.00264 * 11 10 9 28 28 H 1.08994 * 109.47036 * 300.00069 * 11 10 9 29 29 H 0.96999 * 119.99750 * 359.97438 * 12 11 10 30 30 H 1.09003 * 109.47000 * 59.98851 * 15 13 12 31 31 H 1.09005 * 109.46757 * 299.99893 * 15 13 12 32 32 H 1.08997 * 112.53000 * 45.18339 * 16 15 13 33 33 H 1.08999 * 113.14496 * 327.11375 * 17 16 15 34 34 H 1.08999 * 113.14487 * 96.59446 * 17 16 15 35 35 H 1.08997 * 113.14353 * 263.40546 * 21 16 15 36 36 H 1.08999 * 113.14822 * 32.88700 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0009 14 8 0.7907 -7.5929 0.0000 15 6 2.9624 -8.5168 0.0021 16 6 2.1975 -9.8417 0.0013 17 6 1.7809 -10.2969 1.4019 18 16 1.9486 -12.0279 0.8854 19 8 0.8300 -12.4902 0.1410 20 8 2.6003 -12.8314 1.8596 21 6 3.1108 -11.0638 -0.1202 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.8713 -3.6039 0.8922 26 1 2.8728 -3.6047 -0.8877 27 1 0.8547 -5.0450 -0.8895 28 1 0.8527 -5.0447 0.8904 29 1 3.3860 -5.9233 0.0021 30 1 3.5879 -8.4591 0.8929 31 1 3.5904 -8.4588 -0.8870 32 1 1.3749 -9.8487 -0.7138 33 1 2.4932 -10.0095 2.1753 34 1 0.7568 -10.0225 1.6547 35 1 3.2004 -11.4317 -1.1423 36 1 4.0794 -10.9243 0.3598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126011102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:57 Heat of formation + Delta-G solvation = -106.039309 kcal Electronic energy + Delta-G solvation = -18454.139193 eV Core-core repulsion = 15258.844977 eV Total energy + Delta-G solvation = -3195.294216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85957 -37.74500 -37.21152 -36.35336 -35.39675 -33.37374 -31.45096 -29.53277 -27.03874 -26.54169 -23.28181 -21.49071 -20.76698 -19.91255 -19.17295 -17.29793 -16.91043 -16.68423 -16.40910 -16.35652 -15.72397 -15.37374 -14.92807 -14.49092 -14.15849 -13.67377 -13.40703 -13.28853 -12.73400 -12.59061 -12.55872 -12.31846 -11.89493 -11.77698 -11.70318 -11.48681 -10.95738 -10.91893 -10.78617 -10.66978 -10.65994 -9.95250 -9.91987 -9.41995 -9.17027 -8.86283 -8.40909 -6.05518 -4.09071 -0.20535 1.63674 2.67641 3.20536 3.29045 3.33732 3.34291 3.36168 3.64107 3.84992 4.25461 4.40804 4.51484 4.70659 4.77257 4.96611 5.03650 5.20399 5.23677 5.30159 5.45697 5.66333 5.69113 5.71668 6.09700 6.40777 6.53351 6.76025 6.94505 7.58540 7.61522 7.70964 7.92688 8.28759 8.34268 8.97397 9.55335 11.05747 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.067871 B = 0.002417 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.445858 B =11583.850212 C =11751.972872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.727 5.727 13 C 0.505 3.495 14 O -0.543 6.543 15 C -0.120 4.120 16 C -0.052 4.052 17 C -0.594 4.594 18 S 2.407 3.593 19 O -0.914 6.914 20 O -0.931 6.931 21 C -0.601 4.601 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.399 0.601 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.808 -22.637 0.660 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.290 3.710 14 O -0.420 6.420 15 C -0.161 4.161 16 C -0.073 4.073 17 C -0.723 4.723 18 S 2.589 3.411 19 O -0.911 6.911 20 O -0.928 6.928 21 C -0.729 4.729 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.360 -23.805 0.875 24.932 hybrid contribution 1.329 2.300 -0.220 2.665 sum 8.689 -21.505 0.655 23.204 Atomic orbital electron populations 1.69951 1.06079 1.26874 1.50364 1.25033 0.94863 0.99332 0.95220 0.86632 0.79557 0.83048 0.78589 1.20238 1.21243 1.20232 1.21160 0.92940 0.90953 1.51208 0.92704 1.19024 0.93842 0.90858 0.97649 1.21888 0.99764 0.93366 1.00845 1.21659 0.91907 0.85163 1.02014 1.46234 1.10852 1.06006 1.74636 1.20542 0.89730 0.84159 0.76525 1.90707 1.16893 1.84796 1.49627 1.21506 0.97963 0.91500 1.05140 1.21212 0.97424 0.93292 0.95345 1.31027 1.11498 1.24609 1.05191 1.08442 0.77583 0.77133 0.77893 1.93729 1.47603 1.79598 1.70160 1.93639 1.74515 1.67328 1.57281 1.31068 1.14763 1.10878 1.16217 0.92817 0.96283 0.96300 0.92741 0.92736 0.91742 0.91766 0.76764 0.88214 0.87950 0.85821 0.83991 0.85084 0.85556 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.90 16 12 N -0.73 -9.25 5.56 -60.29 -0.33 -9.58 16 13 C 0.50 6.36 7.83 -10.98 -0.09 6.27 16 14 O -0.54 -9.08 15.78 5.56 0.09 -9.00 16 15 C -0.12 -0.89 5.48 -27.89 -0.15 -1.04 16 16 C -0.05 -0.38 2.80 -90.58 -0.25 -0.63 16 17 C -0.59 -3.84 7.48 37.18 0.28 -3.56 16 18 S 2.41 15.24 7.55 -107.50 -0.81 14.42 16 19 O -0.91 -9.35 18.18 -57.30 -1.04 -10.39 16 20 O -0.93 -8.79 18.18 -57.30 -1.04 -9.83 16 21 C -0.60 -2.56 7.50 37.18 0.28 -2.28 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.40 3.86 8.47 -40.82 -0.35 3.52 16 30 H 0.10 0.52 7.89 -51.93 -0.41 0.11 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.12 1.06 7.71 -51.93 -0.40 0.66 16 33 H 0.14 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.14 0.35 8.12 -51.93 -0.42 -0.07 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -37.67 320.41 -8.58 -46.25 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.34 Total: -2.54 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.65 Total: -14.51 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.40 Total: -35.44 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -2.00 Total: -29.22 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 15.24 SS G_CDS: -0.81 Total: 14.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.67 -8.58 -46.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126011102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.784 kcal (2) G-P(sol) polarization free energy of solvation -37.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds