Wall clock time and date at job start Mon Mar 30 2020 01:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48496 * 109.46801 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47133 * 299.99434 * 3 2 1 6 6 H 1.48503 * 109.47198 * 59.99900 * 3 2 1 7 7 C 1.39875 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99856 * 192.82573 * 7 2 1 9 9 N 1.35796 * 120.00536 * 12.83176 * 7 2 1 10 10 C 1.34774 * 120.00191 * 198.42157 * 9 7 2 11 11 O 1.21559 * 120.00169 * 4.83214 * 10 9 7 12 12 C 1.48438 * 119.99700 * 184.83512 * 10 9 7 13 13 O 1.21562 * 119.99997 * 87.01336 * 12 10 9 14 14 C 1.47184 * 120.00411 * 267.00847 * 12 10 9 15 15 C 1.40053 * 120.11389 * 174.73835 * 14 12 10 16 16 C 1.37108 * 119.88595 * 180.02562 * 15 14 12 17 17 C 1.39117 * 120.11357 * 0.02562 * 16 15 14 18 18 O 1.35667 * 119.89339 * 179.97438 * 17 16 15 19 19 C 1.39132 * 120.22598 * 0.25896 * 17 16 15 20 20 C 1.37106 * 120.10806 * 359.44143 * 19 17 16 21 21 C 1.46498 * 119.99416 * 18.41789 * 9 7 2 22 22 C 1.53000 * 117.49725 * 127.03562 * 21 9 7 23 23 C 1.53002 * 117.49902 * 58.37844 * 21 9 7 24 24 H 0.96996 * 119.99965 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.06203 * 0.02562 * 15 14 12 26 26 H 1.08002 * 119.94492 * 180.02562 * 16 15 14 27 27 H 0.96698 * 113.99687 * 89.99775 * 18 17 16 28 28 H 1.07996 * 119.94711 * 179.70303 * 19 17 16 29 29 H 1.07999 * 120.05943 * 180.25929 * 20 19 17 30 30 H 1.09000 * 115.55540 * 272.70421 * 21 9 7 31 31 H 1.08998 * 117.50064 * 0.02562 * 22 21 9 32 32 H 1.08997 * 117.50497 * 145.01669 * 22 21 9 33 33 H 1.08999 * 117.49906 * 214.97183 * 23 21 9 34 34 H 1.08996 * 117.49901 * 359.97338 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8836 2.3965 1.2125 7 6 2.0078 -1.2114 0.0005 8 1 3.0676 -1.2230 0.2082 9 7 1.3543 -2.3729 -0.2601 10 6 1.9061 -3.5506 0.0934 11 8 2.9457 -3.5700 0.7231 12 6 1.2444 -4.8239 -0.2863 13 8 1.4778 -5.3319 -1.3657 14 6 0.3056 -5.4715 0.6441 15 6 -0.4033 -6.6121 0.2466 16 6 -1.2770 -7.2113 1.1169 17 6 -1.4603 -6.6879 2.3928 18 8 -2.3263 -7.2841 3.2501 19 6 -0.7630 -5.5516 2.7905 20 6 0.1176 -4.9486 1.9298 21 6 0.0494 -2.3457 -0.9255 22 6 -0.1233 -3.2082 -2.1774 23 6 -0.0271 -1.6857 -2.3038 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2620 -7.0190 -0.7438 26 1 -1.8238 -8.0911 0.8115 27 1 -1.9244 -7.9686 3.8024 28 1 -0.9123 -5.1463 3.7804 29 1 0.6616 -4.0690 2.2409 30 1 -0.8121 -2.2366 -0.2668 31 1 0.7338 -3.7961 -2.5057 32 1 -1.0984 -3.6663 -2.3425 33 1 -0.9392 -1.1428 -2.5519 34 1 0.8932 -1.2714 -2.7152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142370848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:54 Heat of formation + Delta-G solvation = -38.022649 kcal Electronic energy + Delta-G solvation = -21238.554247 eV Core-core repulsion = 17910.765503 eV Total energy + Delta-G solvation = -3327.788743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23230 -39.17940 -37.64369 -36.39596 -36.11846 -33.20609 -31.38728 -31.10848 -30.15605 -26.26493 -24.18972 -22.76621 -22.22969 -21.45931 -21.24452 -18.80625 -18.50019 -17.14860 -16.92120 -16.21396 -15.47822 -15.32060 -15.04700 -14.68510 -14.30486 -14.21544 -13.58748 -13.49547 -13.35889 -12.75977 -12.47371 -12.25185 -12.00731 -11.84693 -11.47654 -11.21453 -10.71525 -10.53153 -10.46675 -10.45847 -10.35522 -9.95804 -9.46510 -9.03366 -8.96541 -8.59522 -8.30316 -7.99113 -6.47573 -3.97732 0.69204 1.43832 2.52614 3.03929 3.19104 3.25431 3.52990 3.75175 3.93390 4.12793 4.29143 4.63171 4.88357 4.90089 4.96103 5.12270 5.36889 5.45390 5.57458 5.76085 5.77279 5.92988 6.05552 6.14131 6.29848 6.37085 6.38301 6.50406 6.68021 6.75518 6.92929 7.10729 7.40596 7.52260 7.76813 7.85033 8.29565 8.96598 9.20021 9.72614 10.54540 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.005755 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.190239 B = 4864.583622 C = 5129.239508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.046 3.954 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.321 4.321 8 H 0.106 0.894 9 N -0.384 5.384 10 C 0.404 3.596 11 O -0.572 6.572 12 C 0.413 3.587 13 O -0.443 6.443 14 C -0.162 4.162 15 C -0.045 4.045 16 C -0.164 4.164 17 C 0.131 3.869 18 O -0.499 6.499 19 C -0.158 4.158 20 C -0.037 4.037 21 C 0.119 3.881 22 C -0.233 4.233 23 C -0.142 4.142 24 H 0.272 0.728 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.392 0.608 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 -9.178 2.364 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.162 4.162 3 Si 0.750 3.250 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.449 4.449 8 H 0.124 0.876 9 N -0.100 5.100 10 C 0.191 3.809 11 O -0.459 6.459 12 C 0.287 3.713 13 O -0.317 6.317 14 C -0.163 4.163 15 C -0.063 4.063 16 C -0.182 4.182 17 C 0.086 3.914 18 O -0.310 6.310 19 C -0.176 4.176 20 C -0.055 4.055 21 C 0.014 3.986 22 C -0.271 4.271 23 C -0.180 4.180 24 H 0.082 0.918 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.248 0.752 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.934 -8.902 1.837 10.855 hybrid contribution 0.443 0.664 0.240 0.834 sum -5.491 -8.237 2.077 10.116 Atomic orbital electron populations 1.69682 1.06335 1.27978 1.44990 1.25400 0.95319 0.99722 0.95734 0.85889 0.80177 0.80953 0.77948 1.18979 1.20422 1.20517 1.19704 0.94588 0.82357 1.48267 0.87640 1.42836 1.15889 1.04694 1.46629 1.19624 0.89139 0.84550 0.87573 1.90680 1.24868 1.85886 1.44424 1.22457 0.77230 0.86674 0.84939 1.90510 1.54847 1.64008 1.22319 1.20531 1.01325 0.98345 0.96123 1.21135 0.92827 0.92733 0.99595 1.21193 1.00770 1.02090 0.94168 1.18810 0.89740 0.93032 0.89805 1.84738 1.36178 1.56230 1.53870 1.21271 0.97610 0.97370 1.01350 1.21397 0.94347 0.98046 0.91709 1.21375 0.87834 1.01596 0.87764 1.23930 1.03039 0.95360 1.04743 1.22742 1.02303 0.92601 1.00370 0.91758 0.84485 0.84994 0.75174 0.84775 0.84013 0.86387 0.87987 0.89331 0.89432 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.10 10.29 55.54 0.57 -20.53 16 2 C 0.05 1.14 4.94 -17.36 -0.09 1.06 16 3 Si 0.92 19.75 29.58 -169.99 -5.03 14.72 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.32 -8.62 9.18 -15.18 -0.14 -8.76 16 8 H 0.11 2.99 7.38 -52.49 -0.39 2.60 16 9 N -0.38 -9.71 2.90 -108.63 -0.32 -10.03 16 10 C 0.40 10.14 5.91 -12.06 -0.07 10.07 16 11 O -0.57 -16.05 16.78 5.31 0.09 -15.96 16 12 C 0.41 8.85 4.67 -31.75 -0.15 8.70 16 13 O -0.44 -9.69 14.70 5.31 0.08 -9.61 16 14 C -0.16 -2.89 5.88 -104.90 -0.62 -3.50 16 15 C -0.04 -0.66 9.57 -39.31 -0.38 -1.03 16 16 C -0.16 -2.06 9.95 -39.67 -0.39 -2.45 16 17 C 0.13 1.66 6.72 -38.92 -0.26 1.40 16 18 O -0.50 -5.27 13.48 -18.70 -0.25 -5.52 16 19 C -0.16 -2.20 9.95 -39.66 -0.39 -2.60 16 20 C -0.04 -0.62 9.43 -39.31 -0.37 -0.99 16 21 C 0.12 2.68 3.70 -67.93 -0.25 2.43 16 22 C -0.23 -4.59 8.66 -26.69 -0.23 -4.82 16 23 C -0.14 -2.96 8.93 -26.69 -0.24 -3.20 16 24 H 0.27 6.34 8.30 -40.82 -0.34 6.00 16 25 H 0.14 1.88 7.66 -52.49 -0.40 1.47 16 26 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.39 2.09 9.06 45.56 0.41 2.50 16 28 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.14 2.65 7.15 -52.49 -0.38 2.28 16 30 H 0.12 2.73 7.71 -51.93 -0.40 2.33 16 31 H 0.10 2.16 5.75 -51.93 -0.30 1.86 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -30.79 300.08 -6.61 -37.40 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -2.70 Total: 8.71 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -3.58 Total: -3.71 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.26 Total: -30.56 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.08 Total: -31.08 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.79 -6.61 -37.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142370848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.624 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds