Wall clock time and date at job start Mon Mar 30 2020 01:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00357 * 2 1 4 4 H 1.07994 * 120.00154 * 202.41327 * 3 2 1 5 5 C 1.38810 * 119.99554 * 22.41307 * 3 2 1 6 6 N 1.31619 * 120.00483 * 11.37753 * 5 3 2 7 7 Si 1.86805 * 119.99979 * 191.37484 * 5 3 2 8 8 H 1.48497 * 109.47106 * 59.99782 * 7 5 3 9 9 H 1.48500 * 109.47184 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47047 * 300.00281 * 7 5 3 11 11 C 1.46498 * 119.99704 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47372 * 93.61940 * 11 2 1 13 13 C 1.36100 * 120.16274 * 354.71693 * 12 11 2 14 14 C 1.39449 * 120.97968 * 179.97438 * 13 12 11 15 15 Cl 1.73592 * 119.52163 * 180.02562 * 14 13 12 16 16 C 1.36239 * 120.95269 * 0.04793 * 14 13 12 17 17 C 1.40479 * 119.65004 * 359.97438 * 16 14 13 18 18 C 1.40560 * 121.27543 * 179.97438 * 17 16 14 19 19 C 1.36088 * 119.65503 * 180.02562 * 18 17 16 20 20 C 1.39380 * 120.98712 * 0.02562 * 19 18 17 21 21 C 1.36092 * 120.99767 * 359.97438 * 20 19 18 22 22 C 1.40513 * 120.16634 * 174.73138 * 12 11 2 23 23 H 1.08996 * 109.47391 * 274.24638 * 1 2 3 24 24 H 1.09006 * 109.46569 * 34.24825 * 1 2 3 25 25 H 1.08997 * 109.47141 * 154.24178 * 1 2 3 26 26 H 0.97001 * 120.00649 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47620 * 333.62267 * 11 2 1 28 28 H 1.09001 * 109.47205 * 213.61825 * 11 2 1 29 29 H 1.08007 * 119.51161 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.17350 * 179.97438 * 16 14 13 31 31 H 1.08003 * 120.16966 * 0.04252 * 18 17 16 32 32 H 1.07995 * 119.50579 * 179.97438 * 19 18 17 33 33 H 1.08006 * 119.50103 * 180.27632 * 20 19 18 34 34 H 1.08000 * 120.17051 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1685 1.2211 -0.3566 5 6 1.5344 2.3426 0.4584 6 7 0.3856 2.2683 1.0966 7 14 2.3365 4.0047 0.1695 8 1 2.4893 4.2337 -1.2897 9 1 1.4856 5.0730 0.7523 10 1 3.6728 4.0286 0.8168 11 6 2.1975 -1.2687 -0.0006 12 6 2.5263 -1.6584 -1.4187 13 6 2.0510 -0.9200 -2.4585 14 6 2.3451 -1.2647 -3.7773 15 17 1.7194 -0.2958 -5.0746 16 6 3.1161 -2.3513 -4.0623 17 6 3.6238 -3.1372 -3.0145 18 6 4.4222 -4.2656 -3.2694 19 6 4.8964 -5.0039 -2.2291 20 6 4.6020 -4.6587 -0.9112 21 6 3.8323 -3.5732 -0.6262 22 6 3.3250 -2.7859 -1.6741 23 1 -0.3634 0.0761 1.0248 24 1 -0.3633 0.8495 -0.5784 25 1 -0.3633 -0.9255 -0.4466 26 1 -0.0443 3.0766 1.4172 27 1 1.5818 -2.0440 0.4556 28 1 3.1203 -1.1558 0.5685 29 1 1.4368 -0.0542 -2.2593 30 1 3.3357 -2.6070 -5.0883 31 1 4.6584 -4.5450 -4.2856 32 1 5.5092 -5.8706 -2.4278 33 1 4.9946 -5.2591 -0.1038 34 1 3.6128 -3.3177 0.3999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167309705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:46 Heat of formation + Delta-G solvation = 58.877493 kcal Electronic energy + Delta-G solvation = -18493.442005 eV Core-core repulsion = 15610.564332 eV Total energy + Delta-G solvation = -2882.877673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.077 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23087 -36.97097 -36.24440 -35.00448 -32.91137 -30.98891 -29.89517 -28.91292 -26.25134 -25.69243 -23.10937 -22.74250 -21.73353 -19.98954 -17.30114 -16.86595 -16.74353 -16.06279 -14.92307 -14.43503 -14.09568 -13.95954 -13.54667 -13.38124 -13.32885 -13.09534 -12.68426 -12.21005 -11.79266 -11.68601 -11.56427 -10.99157 -10.86048 -10.81433 -10.72275 -10.48208 -10.38336 -10.29106 -10.06056 -9.88653 -9.44987 -8.58016 -8.24776 -7.53223 -6.83699 -5.75818 -3.24011 0.71817 1.20154 2.25460 2.42678 3.18586 3.38767 3.44035 3.45867 4.31695 4.47175 4.80545 4.96087 5.09765 5.21895 5.26161 5.42293 5.46062 5.52008 5.67367 5.75518 5.95677 6.14455 6.15808 6.28343 6.36051 6.44802 6.53218 6.60533 6.72795 6.77095 7.01833 7.12777 7.25621 7.37164 7.70335 7.80099 8.35411 9.20051 9.81551 10.29435 11.29068 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.006281 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.992107 B = 4456.509056 C = 5423.450938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.181 3.819 12 C -0.063 4.063 13 C -0.095 4.095 14 C -0.014 4.014 15 Cl -0.082 7.082 16 C -0.126 4.126 17 C -0.045 4.045 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.094 4.094 22 C -0.050 4.050 23 H 0.031 0.969 24 H 0.046 0.954 25 H -0.002 1.002 26 H 0.254 0.746 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.155 0.845 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -12.651 -7.599 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.053 3.947 12 C -0.067 4.067 13 C -0.113 4.113 14 C -0.041 4.041 15 Cl -0.053 7.053 16 C -0.145 4.145 17 C -0.045 4.045 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.051 4.051 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.172 0.828 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.399 -12.387 -7.612 15.509 hybrid contribution 0.382 1.077 -0.374 1.203 sum 5.781 -11.309 -7.987 15.003 Atomic orbital electron populations 1.20865 0.82222 0.95738 0.99546 1.43887 1.01950 1.00332 1.85790 1.19121 0.97990 0.85283 1.36417 0.91381 1.25005 0.97561 0.98491 0.98122 1.70057 1.17870 1.27312 1.39881 0.86361 0.78564 0.83742 0.78064 1.20910 1.21584 1.20896 1.19756 0.96689 0.89202 0.89068 1.21276 0.93785 0.92048 0.99578 1.20966 1.00428 1.01258 0.88687 1.20794 0.99529 0.94159 0.89585 1.98348 1.86263 1.71239 1.49491 1.20721 0.99700 0.95170 0.98886 1.17874 0.98493 0.95812 0.92364 1.20905 0.97906 0.94694 0.99146 1.20763 1.00410 0.99846 0.92827 1.20801 0.99445 0.97796 0.96527 1.21115 0.96751 0.94448 0.98880 1.18121 0.98443 0.95968 0.92570 0.95058 0.93502 0.98386 0.93621 0.92290 0.91652 0.82799 0.85370 0.85989 0.86401 0.86258 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.44 59.85 0.50 4.35 16 2 N -0.60 -14.41 1.75 -182.50 -0.32 -14.73 16 3 C -0.26 -6.90 9.05 -15.06 -0.14 -7.03 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 5 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 6 N -0.91 -25.88 10.59 55.49 0.59 -25.30 16 7 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.18 3.60 4.78 -5.19 -0.02 3.57 16 12 C -0.06 -1.18 5.87 -104.53 -0.61 -1.79 16 13 C -0.09 -1.84 8.86 -39.90 -0.35 -2.19 16 14 C -0.01 -0.24 6.28 -39.85 -0.25 -0.49 16 15 Cl -0.08 -1.31 28.91 -51.86 -1.50 -2.81 16 16 C -0.13 -1.90 9.51 -39.46 -0.38 -2.28 16 17 C -0.04 -0.68 5.74 -106.84 -0.61 -1.30 16 18 C -0.11 -1.35 9.77 -39.48 -0.39 -1.73 16 19 C -0.12 -1.36 9.95 -39.93 -0.40 -1.76 16 20 C -0.13 -1.52 9.95 -39.93 -0.40 -1.91 16 21 C -0.09 -1.32 9.37 -39.49 -0.37 -1.69 16 22 C -0.05 -0.83 5.74 -106.83 -0.61 -1.44 16 23 H 0.03 0.81 7.41 -51.93 -0.39 0.42 16 24 H 0.05 1.21 7.20 -51.93 -0.37 0.83 16 25 H 0.00 -0.05 8.04 -51.93 -0.42 -0.47 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 27 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 28 H 0.07 1.29 7.77 -51.93 -0.40 0.88 16 29 H 0.15 3.39 6.14 -52.48 -0.32 3.07 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 1.67 6.97 -52.49 -0.37 1.31 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -28.69 300.52 -9.77 -38.46 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.92 Total: -1.29 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -4.11 Total: -15.59 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.27 Total: -40.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.69 -9.77 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167309705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.335 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds