Wall clock time and date at job start Mon Mar 30 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48506 * 109.47196 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47321 * 29.99777 * 3 2 1 6 6 H 1.48496 * 109.47293 * 149.99901 * 3 2 1 7 7 C 1.37875 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99695 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00329 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46874 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.39000 * 120.00039 * 179.97438 * 12 11 10 14 14 C 1.39332 * 120.09565 * 0.02562 * 13 12 11 15 15 N 1.31919 * 119.89129 * 179.97438 * 14 13 12 16 16 C 1.32272 * 120.08494 * 0.02562 * 15 14 13 17 17 C 1.50710 * 119.90313 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46639 * 5.00503 * 17 16 15 19 19 F 1.39904 * 109.46696 * 124.99919 * 17 16 15 20 20 F 1.39892 * 109.47461 * 245.00331 * 17 16 15 21 21 C 1.38156 * 120.19515 * 0.02562 * 16 15 14 22 22 N 1.32246 * 120.10802 * 359.97438 * 21 16 15 23 23 H 0.96995 * 120.00061 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46707 * 59.99807 * 9 7 2 25 25 H 1.09001 * 109.46978 * 299.99811 * 9 7 2 26 26 H 1.08997 * 109.46768 * 60.00328 * 10 9 7 27 27 H 1.08993 * 109.47273 * 300.00192 * 10 9 7 28 28 H 1.08997 * 109.47301 * 60.00475 * 11 10 9 29 29 H 1.09001 * 109.47027 * 299.99787 * 11 10 9 30 30 H 0.97005 * 120.00462 * 359.97438 * 12 11 10 31 31 H 1.07999 * 120.05559 * 359.96369 * 14 13 12 32 32 H 1.08001 * 119.94587 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 7 2.4324 -6.1005 0.0024 13 6 1.9691 -7.4110 0.0034 14 6 0.5997 -7.6680 0.0036 15 7 0.1644 -8.9133 0.0041 16 6 1.0261 -9.9168 0.0049 17 6 0.5243 -11.3379 0.0061 18 9 -0.8700 -11.3402 -0.1090 19 9 1.0825 -12.0304 -1.0738 20 9 0.8945 -11.9623 1.2020 21 6 2.3847 -9.6661 0.0058 22 7 2.8295 -8.4207 0.0054 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6249 -2.5563 0.8920 26 1 2.8727 -3.6039 0.8909 27 1 2.8714 -3.6047 -0.8890 28 1 0.8534 -5.0450 -0.8877 29 1 0.8542 -5.0446 0.8923 30 1 3.3861 -5.9233 0.0019 31 1 -0.1043 -6.8490 0.0035 32 1 3.0847 -10.4886 0.0061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:48 Heat of formation + Delta-G solvation = -113.027363 kcal Electronic energy + Delta-G solvation = -20015.419914 eV Core-core repulsion = 16174.814733 eV Total energy + Delta-G solvation = -3840.605181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.28176 -47.82972 -47.72620 -41.35080 -37.10097 -34.66636 -33.73191 -32.09203 -30.64597 -27.28749 -25.80905 -25.15527 -23.34601 -22.43067 -20.68767 -18.89808 -18.81137 -18.68779 -17.79501 -17.30336 -16.39342 -15.63590 -15.33354 -14.91435 -14.80556 -14.61558 -14.49064 -14.46859 -14.20907 -14.15131 -13.90302 -13.89548 -12.55328 -12.53324 -12.32805 -12.01469 -11.83815 -11.66752 -11.03068 -10.94660 -10.67997 -10.52355 -9.96630 -9.66535 -9.48947 -9.27670 -8.48535 -8.21211 -6.13419 -4.16942 0.48922 0.87321 2.31390 2.78692 3.24039 3.30022 3.31154 3.33604 3.42046 3.73561 4.09419 4.23722 4.24634 4.35512 4.44045 4.82762 5.19204 5.22968 5.24685 5.38182 5.71434 5.77162 6.25854 6.31306 6.56736 6.76276 7.09359 7.15392 7.47029 7.57370 7.60126 7.83854 8.24309 8.89196 9.48342 10.97767 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.054595 B = 0.002663 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.745097 B =10511.265555 C =10833.607734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.110 3.890 12 N -0.690 5.690 13 C 0.387 3.613 14 C 0.001 3.999 15 N -0.359 5.359 16 C -0.114 4.114 17 C 0.536 3.464 18 F -0.165 7.165 19 F -0.175 7.175 20 F -0.175 7.175 21 C 0.168 3.832 22 N -0.508 5.508 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.411 0.589 31 H 0.180 0.820 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -20.526 0.007 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.012 4.012 12 N -0.317 5.317 13 C 0.144 3.856 14 C -0.172 4.172 15 N -0.072 5.072 16 C -0.255 4.255 17 C 0.480 3.520 18 F -0.146 7.146 19 F -0.157 7.157 20 F -0.157 7.157 21 C 0.005 3.995 22 N -0.231 5.231 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.248 0.752 31 H 0.197 0.803 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.502 -20.248 0.012 20.402 hybrid contribution 0.733 0.841 -0.010 1.116 sum 3.235 -19.407 0.002 19.675 Atomic orbital electron populations 1.69947 1.06065 1.26890 1.50296 1.25016 0.94875 0.99379 0.95072 0.86568 0.79821 0.83288 0.78183 1.20591 1.21131 1.19854 1.21166 0.93049 0.90833 1.51356 0.92587 1.19033 0.93731 0.90762 0.97739 1.21901 0.99970 0.92508 1.01526 1.22038 0.92019 0.85136 1.02038 1.45202 1.11065 1.00940 1.74491 1.19719 0.90777 0.87230 0.87877 1.23224 0.93405 0.94267 1.06310 1.67746 1.37277 0.98977 1.03196 1.21360 0.92952 0.93560 1.17636 1.17564 0.75664 0.85055 0.73669 1.93221 1.28990 1.96791 1.95607 1.93217 1.85295 1.81287 1.55861 1.93220 1.91398 1.84288 1.46751 1.23055 0.93173 0.94412 0.88843 1.68195 1.36767 0.98613 1.19520 0.92804 0.96148 0.96133 0.92281 0.92289 0.91013 0.91022 0.75218 0.80264 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.53 -13.87 9.11 -34.44 -0.31 -14.19 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.05 5.27 -26.73 -0.14 -2.20 16 11 C 0.11 1.47 4.90 -4.04 -0.02 1.45 16 12 N -0.69 -8.35 5.73 -60.31 -0.35 -8.69 16 13 C 0.39 4.87 7.67 -154.73 -1.19 3.68 16 14 C 0.00 0.02 10.49 -17.11 -0.18 -0.16 16 15 N -0.36 -4.78 9.89 -9.11 -0.09 -4.87 16 16 C -0.11 -1.37 6.26 -82.43 -0.52 -1.88 16 17 C 0.54 5.93 3.32 36.01 0.12 6.05 16 18 F -0.16 -2.04 16.87 2.25 0.04 -2.00 16 19 F -0.18 -1.81 17.17 2.25 0.04 -1.77 16 20 F -0.18 -1.86 17.28 2.25 0.04 -1.82 16 21 C 0.17 1.81 10.74 -17.40 -0.19 1.63 16 22 N -0.51 -6.31 10.53 -12.24 -0.13 -6.44 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 29 H 0.07 0.93 7.94 -51.93 -0.41 0.51 16 30 H 0.41 4.66 8.60 -40.82 -0.35 4.31 16 31 H 0.18 1.94 6.73 -52.49 -0.35 1.58 16 32 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -28.99 297.69 -6.09 -35.08 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.18 Total: -1.16 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.66 Total: -3.69 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.17 Total: -44.82 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.12 Total: -5.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.99 -6.09 -35.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.951 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds