Wall clock time and date at job start Mon Mar 30 2020 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.38408 * 119.99924 * 179.97438 * 12 11 10 14 14 N 1.32489 * 119.21620 * 359.73928 * 13 12 11 15 15 C 1.32281 * 120.74113 * 179.71630 * 14 13 12 16 16 C 1.38609 * 119.19298 * 0.53834 * 15 14 13 17 17 C 1.50705 * 120.71850 * 179.75278 * 16 15 14 18 18 F 1.39901 * 109.47235 * 269.97883 * 17 16 15 19 19 F 1.39901 * 109.46963 * 29.98170 * 17 16 15 20 20 F 1.39901 * 109.46649 * 149.98127 * 17 16 15 21 21 C 1.38607 * 118.55889 * 359.73634 * 16 15 14 22 22 N 1.32273 * 119.19831 * 359.97438 * 21 16 15 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 31 31 H 1.07996 * 120.40618 * 180.24664 * 15 14 13 32 32 H 1.08000 * 120.39788 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9707 -7.4055 -0.0008 14 7 0.6649 -7.6297 0.0059 15 6 0.1908 -8.8647 0.0014 16 6 1.0782 -9.9295 0.0008 17 6 0.5758 -11.3503 0.0013 18 9 0.4218 -11.7900 1.3205 19 9 -0.6573 -11.4091 -0.6569 20 9 1.4966 -12.1707 -0.6592 21 6 2.4377 -9.6591 -0.0006 22 7 2.8453 -8.4008 -0.0018 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 3.3858 -5.9235 -0.0021 31 1 -0.8746 -9.0412 0.0029 32 1 3.1554 -10.4662 -0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:35 Heat of formation + Delta-G solvation = -111.221536 kcal Electronic energy + Delta-G solvation = -20007.993312 eV Core-core repulsion = 16167.466438 eV Total energy + Delta-G solvation = -3840.526875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.36686 -47.89918 -47.82574 -41.23325 -36.77045 -34.03911 -33.91795 -32.41910 -30.81883 -27.17777 -25.61579 -25.07819 -23.26729 -22.32466 -20.58530 -18.93555 -18.72184 -18.62781 -18.07623 -17.38930 -16.34721 -15.65650 -15.09163 -14.72842 -14.64060 -14.59530 -14.38300 -14.32429 -14.28496 -14.08989 -13.99799 -13.68197 -13.48528 -12.36773 -12.24825 -11.90252 -11.29793 -11.17394 -11.03638 -10.82247 -10.67723 -10.62408 -9.89144 -9.57611 -9.42847 -9.20155 -8.42708 -8.34614 -6.07391 -4.10641 0.60302 0.87416 2.40801 2.76086 3.27641 3.34300 3.37113 3.47589 3.56341 3.72587 3.91498 4.20920 4.23428 4.39360 4.48942 4.85498 5.28745 5.31488 5.51948 5.63077 5.74912 6.01477 6.40164 6.46958 6.63663 6.81717 6.92980 7.27796 7.55967 7.67293 7.90656 8.06354 8.31508 8.95715 9.54018 11.03861 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.054820 B = 0.002665 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.638215 B =10505.894231 C =10826.127103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.123 4.123 11 C 0.126 3.874 12 N -0.675 5.675 13 C 0.585 3.415 14 N -0.559 5.559 15 C 0.253 3.747 16 C -0.382 4.382 17 C 0.532 3.468 18 F -0.178 7.178 19 F -0.178 7.178 20 F -0.179 7.179 21 C 0.251 3.749 22 N -0.572 5.572 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.417 0.583 31 H 0.177 0.823 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -22.926 -0.006 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.161 4.161 11 C 0.004 3.996 12 N -0.305 5.305 13 C 0.228 3.772 14 N -0.282 5.282 15 C 0.082 3.918 16 C -0.393 4.393 17 C 0.476 3.524 18 F -0.160 7.160 19 F -0.159 7.159 20 F -0.160 7.160 21 C 0.080 3.920 22 N -0.294 5.294 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.255 0.745 31 H 0.194 0.806 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.000 -21.548 0.004 21.640 hybrid contribution 0.387 -0.121 -0.014 0.406 sum 2.387 -21.669 -0.009 21.800 Atomic orbital electron populations 1.69961 1.06061 1.26775 1.50439 1.25023 0.94870 0.99337 0.95174 0.86572 0.79815 0.83343 0.78141 1.20622 1.21162 1.19869 1.21189 0.93030 0.90887 1.51139 0.92614 1.19013 0.93736 0.90675 0.97732 1.21940 0.99966 0.93025 1.01200 1.21832 0.91333 0.83931 1.02547 1.44880 1.10947 1.00642 1.74048 1.19705 0.85113 0.87291 0.85063 1.68217 1.14040 1.23107 1.22791 1.22803 1.00393 0.85535 0.83031 1.21279 0.98506 0.93845 1.25666 1.17728 0.75075 0.85968 0.73640 1.93229 1.95514 1.91030 1.36187 1.93190 1.44601 1.96877 1.81234 1.93182 1.66471 1.75209 1.81165 1.22696 0.92311 0.93460 0.83491 1.68134 1.38188 0.99449 1.23607 0.92871 0.96188 0.96171 0.92517 0.92510 0.91151 0.91156 0.74543 0.80636 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.13 2.03 5.65 -4.04 -0.02 2.01 16 12 N -0.67 -9.54 5.70 -62.31 -0.36 -9.89 16 13 C 0.58 8.29 8.43 -322.81 -2.72 5.58 16 14 N -0.56 -7.80 9.59 -13.93 -0.13 -7.93 16 15 C 0.25 2.77 10.67 -17.22 -0.18 2.59 16 16 C -0.38 -3.82 5.47 -104.35 -0.57 -4.39 16 17 C 0.53 4.81 3.39 36.01 0.12 4.93 16 18 F -0.18 -1.71 17.30 2.25 0.04 -1.67 16 19 F -0.18 -1.64 16.55 2.25 0.04 -1.60 16 20 F -0.18 -1.59 16.55 2.25 0.04 -1.56 16 21 C 0.25 2.57 10.67 -17.23 -0.18 2.39 16 22 N -0.57 -7.33 10.46 -13.93 -0.15 -7.48 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.42 5.26 8.59 -40.82 -0.35 4.91 16 31 H 0.18 1.43 7.69 -52.49 -0.40 1.02 16 32 H 0.18 1.23 7.69 -52.49 -0.40 0.83 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -29.95 298.25 -7.80 -37.74 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.24 Total: -0.77 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -4.25 Total: -1.97 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.10 Total: -50.84 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.95 -7.80 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.477 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds