Wall clock time and date at job start Mon Mar 30 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46716 * 2 1 4 4 C 1.53000 * 109.46841 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47130 * 179.97438 * 4 3 2 6 6 C 1.37101 * 120.00349 * 270.00622 * 5 4 3 7 7 H 1.07993 * 120.00114 * 144.48355 * 6 5 4 8 8 C 1.38944 * 119.99783 * 324.48086 * 6 5 4 9 9 N 1.31415 * 120.00180 * 338.58498 * 8 6 5 10 10 Si 1.86800 * 120.00224 * 158.58262 * 8 6 5 11 11 H 1.48501 * 109.46815 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47378 * 120.00106 * 10 8 6 13 13 H 1.48498 * 109.47249 * 240.00471 * 10 8 6 14 14 C 1.34780 * 120.00020 * 90.00359 * 5 4 3 15 15 O 1.21299 * 119.99493 * 5.05226 * 14 5 4 16 16 C 1.50694 * 120.00192 * 185.05377 * 14 5 4 17 17 C 1.53042 * 113.15212 * 206.85691 * 16 14 5 18 18 S 1.81426 * 89.89045 * 211.85605 * 17 16 14 19 19 O 1.42098 * 112.75561 * 136.72959 * 18 17 16 20 20 O 1.42102 * 112.75241 * 280.47214 * 18 17 16 21 21 C 1.53045 * 113.14909 * 106.48406 * 16 14 5 22 22 H 1.09001 * 109.47307 * 60.00537 * 1 2 3 23 23 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47357 * 300.00078 * 1 2 3 25 25 H 1.09000 * 109.47357 * 239.99922 * 2 1 3 26 26 H 1.08997 * 109.46693 * 119.99844 * 2 1 3 27 27 H 1.09000 * 109.47271 * 59.99870 * 3 2 1 28 28 H 1.08995 * 109.47210 * 299.99911 * 3 2 1 29 29 H 1.08998 * 109.46744 * 60.00660 * 4 3 2 30 30 H 1.08995 * 109.47560 * 300.00204 * 4 3 2 31 31 H 0.97000 * 120.00309 * 183.72180 * 9 8 6 32 32 H 1.08999 * 112.52638 * 336.66936 * 16 14 5 33 33 H 1.09010 * 113.14701 * 327.11013 * 17 16 14 34 34 H 1.08997 * 113.14916 * 96.59121 * 17 16 14 35 35 H 1.09003 * 113.14901 * 263.40044 * 21 16 14 36 36 H 1.08994 * 113.14994 * 32.88922 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2871 3.4695 -1.1875 7 1 4.0847 4.5267 -1.2752 8 6 4.7797 2.7637 -2.2783 9 7 5.4137 1.6275 -2.0939 10 14 4.5406 3.4298 -4.0071 11 1 3.8012 4.7161 -3.9440 12 1 5.8656 3.6516 -4.6398 13 1 3.7654 2.4517 -4.8116 14 6 4.2825 3.4598 1.1670 15 8 4.1683 2.8610 2.2157 16 6 4.6749 4.9148 1.1689 17 6 5.4972 5.3146 2.3961 18 16 4.7717 6.9765 2.3364 19 8 4.3964 7.4588 3.6192 20 8 5.3818 7.8076 1.3585 21 6 3.5466 5.8417 1.6273 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.9336 0.9287 -0.8892 30 1 3.9330 0.9289 0.8908 31 1 5.8046 1.1619 -2.8498 32 1 5.1297 5.2258 0.2284 33 1 5.2242 4.7600 3.2940 34 1 6.5715 5.3091 2.2124 35 1 2.9873 6.2778 0.7996 36 1 2.8978 5.3887 2.3769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182813762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:16 Heat of formation + Delta-G solvation = -112.828387 kcal Electronic energy + Delta-G solvation = -20035.894394 eV Core-core repulsion = 16840.305782 eV Total energy + Delta-G solvation = -3195.588612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81370 -38.37734 -37.65414 -37.11779 -36.24909 -35.52238 -33.42969 -30.15979 -27.54097 -26.91350 -25.75962 -23.26412 -21.91828 -20.92307 -19.76828 -18.99494 -18.08038 -17.39997 -17.10669 -16.81842 -16.62874 -16.21743 -15.87562 -15.54030 -15.14933 -14.57182 -14.38504 -13.97366 -13.80517 -13.66135 -13.32161 -13.29804 -13.10619 -13.09515 -12.84444 -12.55085 -12.24179 -12.13409 -12.03294 -12.00157 -11.88891 -11.79464 -11.43723 -11.29080 -11.02689 -10.34810 -9.46834 -8.31524 -6.06445 -0.79937 0.99429 1.40570 1.49633 1.60939 1.93057 2.29890 2.70592 2.84735 3.00699 3.26864 3.53426 3.76380 4.05201 4.08945 4.18804 4.29394 4.34382 4.43549 4.61490 4.63364 4.83198 4.86748 4.91173 4.98582 5.05632 5.10399 5.17839 5.35327 5.42569 5.45687 5.58750 6.01221 6.40487 7.10232 7.56381 7.99152 8.70622 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.006644 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.415729 B = 4213.519982 C = 5411.370284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.107 3.893 5 N -0.445 5.445 6 C -0.361 4.361 7 H 0.107 0.893 8 C 0.006 3.994 9 N -0.890 5.890 10 Si 0.978 3.022 11 H -0.253 1.253 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.478 3.522 15 O -0.630 6.630 16 C -0.096 4.096 17 C -0.581 4.581 18 S 2.474 3.526 19 O -0.949 6.949 20 O -0.933 6.933 21 C -0.577 4.577 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 5.023 1.713 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.017 4.017 5 N -0.161 5.161 6 C -0.488 4.488 7 H 0.124 0.876 8 C -0.198 4.198 9 N -0.527 5.527 10 Si 0.801 3.199 11 H -0.176 1.176 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.266 3.734 15 O -0.519 6.519 16 C -0.119 4.119 17 C -0.709 4.709 18 S 2.656 3.344 19 O -0.946 6.946 20 O -0.930 6.930 21 C -0.706 4.706 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.509 5.714 2.354 7.650 hybrid contribution 0.103 -1.373 -1.137 1.786 sum -4.406 4.340 1.217 6.304 Atomic orbital electron populations 1.21710 0.94052 1.02351 1.01845 1.21417 0.97187 0.95254 1.01637 1.21758 0.95177 0.97738 1.00531 1.21488 0.93514 0.84715 1.01948 1.43722 1.55039 1.12328 1.05037 1.19862 1.45069 0.96131 0.87722 0.87582 1.26182 0.93677 0.96212 1.03731 1.69972 1.31444 1.18112 1.33165 0.85104 0.78198 0.79080 0.77477 1.17638 1.20639 1.20493 1.20274 0.80115 0.89390 0.83623 1.90481 1.59306 1.69128 1.32958 1.21470 0.96077 0.94566 0.99797 1.30902 1.11341 1.23814 1.04891 1.06640 0.78756 0.75263 0.73785 1.93582 1.80513 1.80883 1.39585 1.93669 1.73403 1.64935 1.61016 1.30845 1.13069 1.12826 1.13815 0.92567 0.91169 0.92809 0.92214 0.92478 0.94008 0.92516 0.88830 0.94870 0.91726 0.84718 0.83819 0.84374 0.83473 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.77 5.93 30.60 0.18 -3.58 16 3 C -0.11 -4.49 5.54 30.59 0.17 -4.32 16 4 C 0.11 5.09 5.04 86.38 0.44 5.53 16 5 N -0.44 -21.70 2.54 -635.55 -1.61 -23.31 16 6 C -0.36 -17.20 8.40 84.04 0.71 -16.49 16 7 H 0.11 4.64 6.79 -2.91 -0.02 4.62 16 8 C 0.01 0.27 4.98 84.92 0.42 0.69 16 9 N -0.89 -45.72 11.31 21.66 0.25 -45.47 16 10 Si 0.98 37.54 29.61 68.60 2.03 39.57 16 11 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 12 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 13 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 14 C 0.48 22.23 6.99 87.65 0.61 22.84 16 15 O -0.63 -32.30 15.66 -3.09 -0.05 -32.34 16 16 C -0.10 -3.39 3.11 -11.51 -0.04 -3.42 16 17 C -0.58 -16.52 7.37 72.00 0.53 -15.99 16 18 S 2.47 58.54 7.55 -56.49 -0.43 58.11 16 19 O -0.95 -26.65 18.18 -127.88 -2.32 -28.98 16 20 O -0.93 -26.28 18.18 -127.88 -2.32 -28.61 16 21 C -0.58 -15.35 7.48 72.00 0.54 -14.82 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.09 4.75 5.37 -2.39 -0.01 4.74 16 30 H 0.03 1.67 7.36 -2.39 -0.02 1.65 16 31 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 32 H 0.14 4.68 6.50 -2.39 -0.02 4.67 16 33 H 0.14 4.34 7.46 -2.38 -0.02 4.32 16 34 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.14 3.86 8.11 -2.39 -0.02 3.84 16 Total: -1.00 -68.26 312.27 0.89 -67.37 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 1.07 Total: 26.15 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 4.27 Total: -32.49 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -1.37 Total: -68.79 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -4.70 Total: -89.93 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: 58.54 SS G_CDS: -0.43 Total: 58.11 kcal Total: -68.26 0.89 -67.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182813762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.455 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds