Wall clock time and date at job start Mon Mar 30 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86795 * 119.99785 * 2 1 4 4 H 1.48509 * 109.47113 * 275.41372 * 3 2 1 5 5 H 1.48499 * 109.47122 * 35.41616 * 3 2 1 6 6 H 1.48498 * 109.47221 * 155.41551 * 3 2 1 7 7 C 1.39935 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00144 * 341.73429 * 7 2 1 9 9 C 1.41433 * 120.00134 * 161.73195 * 7 2 1 10 10 C 1.40792 * 120.17549 * 330.17590 * 9 7 2 11 11 C 1.37708 * 120.03606 * 179.97438 * 10 9 7 12 12 C 1.38374 * 120.41688 * 359.78321 * 11 10 9 13 13 C 1.39876 * 120.35510 * 0.47667 * 12 11 10 14 14 C 1.47886 * 120.02492 * 179.78059 * 13 12 11 15 15 O 1.21553 * 120.00072 * 179.72037 * 14 13 12 16 16 N 1.34769 * 120.00084 * 359.72580 * 14 13 12 17 17 C 1.46498 * 120.00323 * 179.97438 * 16 14 13 18 18 H 1.09003 * 110.74851 * 323.28972 * 17 16 14 19 19 C 1.54261 * 110.69360 * 86.45240 * 17 16 14 20 20 O 1.45588 * 106.37518 * 117.32994 * 19 17 16 21 21 C 1.34531 * 109.63503 * 21.26534 * 20 19 17 22 22 O 1.20828 * 126.42988 * 147.14895 * 21 20 19 23 23 C 1.51785 * 107.14143 * 327.17604 * 21 20 19 24 24 C 1.39031 * 119.94986 * 359.50232 * 13 12 11 25 25 H 0.97000 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.98260 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.79153 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.82322 * 180.22858 * 12 11 10 29 29 H 0.97004 * 119.99934 * 359.97438 * 16 14 13 30 30 H 1.09004 * 110.07556 * 236.55858 * 19 17 16 31 31 H 1.09001 * 110.07613 * 358.04410 * 19 17 16 32 32 H 1.08992 * 110.61129 * 272.11790 * 23 21 20 33 33 H 1.08995 * 110.61144 * 149.13303 * 23 21 20 34 34 H 1.07996 * 120.20399 * 180.27671 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3753 2.1125 -1.3939 5 1 1.5015 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2922 9 6 3.3688 -1.2426 -0.3845 10 6 3.8624 -0.3099 -1.3165 11 6 5.1881 -0.3421 -1.6879 12 6 6.0444 -1.2849 -1.1471 13 6 5.5709 -2.2229 -0.2239 14 6 6.4915 -3.2304 0.3458 15 8 6.0806 -4.0421 1.1519 16 7 7.7860 -3.2484 -0.0286 17 6 8.6981 -4.2460 0.5362 18 1 8.4627 -4.4354 1.5835 19 6 8.6473 -5.5546 -0.2792 20 8 9.9798 -5.7444 -0.8341 21 6 10.8735 -5.0423 -0.1142 22 8 12.0226 -5.3490 0.0992 23 6 10.1673 -3.7930 0.3801 24 6 4.2354 -2.2038 0.1621 25 1 -0.4850 0.8400 0.0004 26 1 3.2012 0.4317 -1.7398 27 1 5.5626 0.3756 -2.4029 28 1 7.0832 -1.2991 -1.4424 29 1 8.1138 -2.6008 -0.6721 30 1 8.3901 -6.3908 0.3710 31 1 7.9156 -5.4668 -1.0823 32 1 10.2458 -2.9918 -0.3547 33 1 10.5751 -3.4761 1.3399 34 1 3.8664 -2.9233 0.8780 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188688444.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:26 Heat of formation + Delta-G solvation = -115.318114 kcal Electronic energy + Delta-G solvation = -20150.669772 eV Core-core repulsion = 16819.529246 eV Total energy + Delta-G solvation = -3331.140526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.19144 -40.85320 -39.13605 -38.59048 -36.13670 -35.54520 -33.01013 -31.93375 -31.36024 -29.02180 -27.10526 -25.16519 -23.01448 -22.56056 -22.38357 -21.43800 -19.74247 -18.38284 -18.29304 -17.96641 -17.51106 -17.29114 -16.63489 -16.39812 -15.89291 -15.54937 -15.25180 -15.01980 -14.65242 -14.55585 -14.40146 -13.92091 -13.72271 -13.36143 -13.14293 -12.83758 -12.76861 -12.65306 -12.30071 -11.82722 -11.72564 -11.56594 -11.50066 -11.19767 -10.85919 -10.30729 -9.60868 -9.55469 -8.90559 -6.54347 0.17793 0.75392 0.76500 1.26604 1.42908 1.49234 1.92001 1.94591 2.12485 2.23883 2.65127 2.96631 3.18918 3.46462 3.53136 3.88701 3.89851 4.27359 4.29218 4.43807 4.52798 4.57733 4.68562 4.69343 4.90311 4.94519 5.16570 5.29681 5.43906 5.59568 5.65703 5.73713 5.86934 6.11424 6.26151 6.31928 6.50475 6.67187 6.75722 7.16747 8.18548 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.043810 B = 0.003649 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.975088 B = 7670.725364 C = 7979.054175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.044 3.956 3 Si 0.968 3.032 4 H -0.248 1.248 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.490 4.490 8 H 0.050 0.950 9 C 0.064 3.936 10 C -0.225 4.225 11 C -0.085 4.085 12 C -0.179 4.179 13 C -0.114 4.114 14 C 0.571 3.429 15 O -0.574 6.574 16 N -0.700 5.700 17 C 0.117 3.883 18 H 0.117 0.883 19 C 0.044 3.956 20 O -0.368 6.368 21 C 0.493 3.507 22 O -0.485 6.485 23 C -0.174 4.174 24 C -0.165 4.165 25 H 0.294 0.706 26 H 0.103 0.897 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.420 0.580 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.828 -0.313 -2.496 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.170 4.170 3 Si 0.790 3.210 4 H -0.173 1.173 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.519 4.519 8 H 0.068 0.932 9 C 0.062 3.938 10 C -0.245 4.245 11 C -0.102 4.102 12 C -0.198 4.198 13 C -0.117 4.117 14 C 0.360 3.640 15 O -0.454 6.454 16 N -0.355 5.355 17 C 0.012 3.988 18 H 0.135 0.865 19 C -0.031 4.031 20 O -0.285 6.285 21 C 0.334 3.666 22 O -0.369 6.369 23 C -0.212 4.212 24 C -0.185 4.185 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.260 0.740 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.848 -1.101 -1.991 17.993 hybrid contribution -0.756 0.513 -0.016 0.914 sum 17.092 -0.589 -2.008 17.220 Atomic orbital electron populations 1.69731 1.09411 1.31611 1.37031 1.26918 0.95395 1.04463 0.90262 0.85455 0.79666 0.75924 0.79935 1.17311 1.20670 1.17180 1.19483 0.94697 0.95656 1.42112 0.93219 1.17768 0.92450 0.92473 0.91102 1.21408 0.97572 1.03404 1.02097 1.21057 0.92258 0.98240 0.98690 1.21051 1.00416 0.97460 1.00881 1.19649 0.93262 0.98002 1.00804 1.18495 0.82455 0.83037 0.79984 1.90728 1.77458 1.41673 1.35586 1.45715 1.07672 1.35320 1.46820 1.22060 0.88858 0.88003 0.99917 0.86462 1.24636 0.79835 0.99017 0.99621 1.87110 1.19871 1.69541 1.52005 1.23581 0.84970 0.84890 0.73120 1.90715 1.18057 1.74947 1.53199 1.23277 0.92451 0.97518 1.07976 1.21213 0.92943 1.02142 1.02203 0.89515 0.87910 0.83645 0.82758 0.73959 0.87709 0.86920 0.83129 0.84147 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.27 13.93 21.82 0.30 -45.96 16 2 C 0.04 2.30 5.40 85.25 0.46 2.76 16 3 Si 0.97 40.33 24.52 68.60 1.68 42.01 16 4 H -0.25 -9.41 6.71 99.48 0.67 -8.75 16 5 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.25 -10.36 6.86 99.48 0.68 -9.68 16 7 C -0.49 -27.28 9.57 23.47 0.22 -27.05 16 8 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 9 C 0.06 3.16 5.10 -21.32 -0.11 3.05 16 10 C -0.23 -9.49 7.17 22.77 0.16 -9.33 16 11 C -0.08 -2.75 10.01 22.18 0.22 -2.53 16 12 C -0.18 -5.16 9.55 22.70 0.22 -4.94 16 13 C -0.11 -4.08 5.87 -20.14 -0.12 -4.20 16 14 C 0.57 17.44 7.77 86.80 0.67 18.11 16 15 O -0.57 -21.79 16.06 -3.88 -0.06 -21.85 16 16 N -0.70 -12.84 5.03 -440.86 -2.22 -15.06 16 17 C 0.12 1.76 3.42 45.94 0.16 1.92 16 18 H 0.12 1.94 7.70 -2.39 -0.02 1.92 16 19 C 0.04 0.71 7.70 72.41 0.56 1.27 16 20 O -0.37 -7.17 11.07 -54.80 -0.61 -7.78 16 21 C 0.49 9.15 8.57 71.58 0.61 9.76 16 22 O -0.48 -12.59 18.00 21.51 0.39 -12.21 16 23 C -0.17 -1.78 6.73 30.72 0.21 -1.57 16 24 C -0.16 -7.53 9.34 23.01 0.21 -7.32 16 25 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 26 H 0.10 4.32 4.72 -2.91 -0.01 4.31 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.15 2.71 6.38 -2.91 -0.02 2.69 16 29 H 0.42 5.10 6.33 -92.71 -0.59 4.51 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.11 1.87 7.95 -2.39 -0.02 1.86 16 32 H 0.15 0.78 7.68 -2.39 -0.02 0.76 16 33 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 4.51 7.64 -2.91 -0.02 4.49 16 Total: -1.00 -70.16 294.56 3.48 -66.68 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.51 Total: 14.25 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.48 Total: -20.08 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -1.91 Total: -61.02 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.28 Total: -41.84 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.68 Total: 42.01 kcal Total: -70.16 3.48 -66.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688444.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.638 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds