Wall clock time and date at job start Mon Mar 30 2020 01:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00376 * 2 1 4 4 H 1.48508 * 109.46760 * 269.99371 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.98984 * 3 2 1 6 6 H 1.48494 * 109.47323 * 149.99492 * 3 2 1 7 7 C 1.37879 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00397 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99591 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.40315 * 66.46444 * 9 7 2 11 11 O 1.42098 * 106.40282 * 293.53804 * 9 7 2 12 12 N 1.65601 * 107.21578 * 180.02562 * 9 7 2 13 13 C 1.46931 * 120.69163 * 90.00025 * 12 9 7 14 14 C 1.53190 * 108.91133 * 234.10823 * 13 12 9 15 15 C 1.53143 * 109.27810 * 304.85629 * 14 13 12 16 16 C 1.52377 * 109.63141 * 60.35611 * 15 14 13 17 17 C 1.53970 * 110.31932 * 62.58498 * 16 15 14 18 18 C 1.54615 * 103.99549 * 118.81349 * 17 16 15 19 19 O 1.44715 * 104.70873 * 336.28313 * 18 17 16 20 20 C 1.44557 * 105.46818 * 39.97439 * 19 18 17 21 21 C 1.47059 * 120.68961 * 270.02088 * 12 9 7 22 22 H 0.97004 * 119.99643 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.56588 * 114.27448 * 13 12 9 24 24 H 1.09004 * 109.65283 * 353.99001 * 13 12 9 25 25 H 1.08998 * 109.49926 * 184.91964 * 14 13 12 26 26 H 1.08990 * 109.50394 * 64.79572 * 14 13 12 27 27 H 1.09007 * 109.44714 * 300.30608 * 15 14 13 28 28 H 1.09003 * 109.44401 * 180.40633 * 15 14 13 29 29 H 1.09002 * 110.54923 * 237.48129 * 17 16 15 30 30 H 1.08997 * 110.54740 * 0.14608 * 17 16 15 31 31 H 1.09002 * 110.37145 * 95.00989 * 18 17 16 32 32 H 1.08999 * 110.37381 * 217.34756 * 18 17 16 33 33 H 1.08998 * 110.39230 * 201.30680 * 20 19 18 34 34 H 1.09000 * 110.49137 * 78.96863 * 20 19 18 35 35 H 1.08990 * 109.58131 * 7.55511 * 21 12 9 36 36 H 1.09001 * 109.58052 * 247.14361 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0461 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1942 0.0012 10 8 4.1673 -0.6496 1.2510 11 8 4.1682 -0.6501 -1.2485 12 7 4.2566 -2.7760 0.0011 13 6 4.4790 -3.4921 -1.2625 14 6 3.6488 -4.7795 -1.2564 15 6 3.9978 -5.6003 -0.0116 16 6 3.6787 -4.7924 1.2404 17 6 2.1704 -4.4913 1.3124 18 6 1.7145 -5.1762 2.6215 19 8 2.6976 -6.2119 2.8560 20 6 3.9698 -5.6230 2.5031 21 6 4.4778 -3.4934 1.2656 22 1 -0.4850 0.8401 -0.0004 23 1 5.5360 -3.7398 -1.3606 24 1 4.1722 -2.8639 -2.0988 25 1 3.8730 -5.3612 -2.1505 26 1 2.5883 -4.5285 -1.2412 27 1 5.0599 -5.8453 -0.0244 28 1 3.4136 -6.5206 -0.0082 29 1 1.9968 -3.4164 1.3624 30 1 1.6530 -4.9219 0.4551 31 1 1.7145 -4.4608 3.4439 32 1 0.7232 -5.6119 2.4965 33 1 4.7013 -6.4012 2.2855 34 1 4.3284 -4.9796 3.3066 35 1 4.1443 -2.8755 2.0992 36 1 5.5383 -3.7191 1.3769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192954236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:43 Heat of formation + Delta-G solvation = -128.641609 kcal Electronic energy + Delta-G solvation = -21232.740639 eV Core-core repulsion = 18036.466314 eV Total energy + Delta-G solvation = -3196.274325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11729 -36.94181 -35.74710 -34.47336 -33.09421 -32.39086 -31.44205 -29.54993 -26.43239 -25.70005 -24.23906 -22.48675 -21.76999 -19.09724 -18.29734 -17.48824 -16.80380 -15.97874 -15.82138 -15.28104 -15.08886 -14.76336 -14.22978 -13.67601 -13.54201 -13.47522 -13.16302 -12.95364 -12.82831 -12.36236 -11.75461 -11.58651 -11.38087 -11.34568 -11.18327 -10.85849 -10.71511 -10.64170 -10.54099 -10.47672 -10.20876 -10.10142 -9.79550 -9.52411 -9.23872 -9.10044 -8.26699 -6.83428 -5.37120 1.96687 3.04480 3.14745 3.24210 3.92401 4.07181 4.17266 4.55496 4.68698 4.81124 4.96340 5.25569 5.32653 5.36020 5.40369 5.43864 5.49638 5.64530 5.70403 5.77200 5.83875 5.93507 5.95539 6.01306 6.07140 6.12473 6.20368 6.26500 6.38656 6.46773 6.62052 6.70423 6.97366 7.32816 7.45351 8.18637 8.67892 10.28259 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.008047 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.086064 B = 3478.857875 C = 3925.943843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.155 3.845 3 Si 0.798 3.202 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.015 5.015 8 H 0.126 0.874 9 S 2.672 3.328 10 O -1.007 7.007 11 O -1.009 7.009 12 N -0.999 5.999 13 C 0.126 3.874 14 C -0.138 4.138 15 C -0.096 4.096 16 C -0.105 4.105 17 C -0.153 4.153 18 C 0.044 3.956 19 O -0.381 6.381 20 C 0.056 3.944 21 C 0.141 3.859 22 H 0.280 0.720 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -10.272 1.444 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.065 4.065 3 Si 0.619 3.381 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.150 5.150 8 H 0.144 0.856 9 S 2.776 3.224 10 O -0.997 6.997 11 O -1.000 7.000 12 N -0.835 5.835 13 C 0.001 3.999 14 C -0.176 4.176 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.190 4.190 18 C -0.032 4.032 19 O -0.300 6.300 20 C -0.022 4.022 21 C 0.015 3.985 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.268 -9.657 1.520 11.613 hybrid contribution -0.517 0.669 -0.134 0.857 sum 5.751 -8.987 1.386 10.760 Atomic orbital electron populations 1.69985 1.06519 1.29005 1.39547 1.24404 0.94739 0.98677 0.88648 0.87912 0.83638 0.84778 0.81821 1.17087 1.17917 1.14264 1.30585 1.15582 1.02157 1.66645 0.85629 1.01522 0.77423 0.70280 0.73203 1.93455 1.85384 1.75699 1.45194 1.93397 1.85368 1.75816 1.45373 1.57716 1.84497 1.31107 1.10140 1.21237 0.98914 0.93692 0.86105 1.21984 1.01689 0.96487 0.97483 1.21369 1.00964 0.97628 0.93401 1.21866 0.96601 0.96150 0.96055 1.23183 0.93965 1.03837 0.98016 1.23533 0.92867 0.90010 0.96806 1.89108 1.16488 1.36407 1.88023 1.23369 0.87134 0.96684 0.94963 1.21171 0.98654 0.92126 0.86565 0.90929 0.92319 0.89063 0.91273 0.90721 0.92029 0.91682 0.88203 0.90443 0.92108 0.89365 0.89263 0.92014 0.88939 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.03 13.96 55.43 0.77 -22.26 16 2 C 0.15 4.32 5.47 -17.82 -0.10 4.22 16 3 Si 0.80 20.29 26.54 -169.99 -4.51 15.78 16 4 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.22 -5.73 5.61 56.52 0.32 -5.41 16 7 C -1.02 -27.07 9.68 30.60 0.30 -26.77 16 8 H 0.13 3.32 6.66 -52.48 -0.35 2.97 16 9 S 2.67 65.34 4.19 -107.50 -0.45 64.89 16 10 O -1.01 -26.35 14.76 -57.17 -0.84 -27.20 16 11 O -1.01 -26.52 15.54 -57.17 -0.89 -27.41 16 12 N -1.00 -18.86 3.11 -113.79 -0.35 -19.21 16 13 C 0.13 2.02 6.36 -3.71 -0.02 2.00 16 14 C -0.14 -1.86 5.88 -26.56 -0.16 -2.02 16 15 C -0.10 -1.20 4.44 -26.98 -0.12 -1.32 16 16 C -0.10 -1.48 0.69 -154.08 -0.11 -1.59 16 17 C -0.15 -2.40 5.65 -25.38 -0.14 -2.55 16 18 C 0.04 0.63 7.67 38.01 0.29 0.93 16 19 O -0.38 -5.59 11.66 -35.23 -0.41 -6.00 16 20 C 0.06 0.71 6.74 37.64 0.25 0.96 16 21 C 0.14 2.27 4.71 -3.98 -0.02 2.26 16 22 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 1.57 7.12 -51.93 -0.37 1.20 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.12 6.67 -51.93 -0.35 0.78 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.86 5.56 -51.93 -0.29 1.57 16 30 H 0.08 1.19 6.59 -51.93 -0.34 0.85 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 35 H 0.09 1.60 7.13 -51.93 -0.37 1.23 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -31.23 287.61 -7.24 -38.46 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.06 Total: 2.49 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 0.18 Total: -23.88 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.42 Total: -41.47 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -2.14 Total: -60.61 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.51 Total: 15.78 kcal Atomic # 16 Polarization: 65.34 SS G_CDS: -0.45 Total: 64.89 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.23 -7.24 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192954236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.178 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds