Wall clock time and date at job start Mon Mar 30 2020 01:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00376 * 2 1 4 4 H 1.48508 * 109.46760 * 269.99371 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.98984 * 3 2 1 6 6 H 1.48494 * 109.47323 * 149.99492 * 3 2 1 7 7 C 1.37879 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00397 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99591 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.40315 * 66.46444 * 9 7 2 11 11 O 1.42098 * 106.40282 * 293.53804 * 9 7 2 12 12 N 1.65601 * 107.21578 * 180.02562 * 9 7 2 13 13 C 1.46931 * 120.69163 * 90.00025 * 12 9 7 14 14 C 1.53190 * 108.91133 * 234.10823 * 13 12 9 15 15 C 1.53143 * 109.27810 * 304.85629 * 14 13 12 16 16 C 1.52377 * 109.63141 * 60.35611 * 15 14 13 17 17 C 1.53970 * 110.31932 * 62.58498 * 16 15 14 18 18 C 1.54615 * 103.99549 * 118.81349 * 17 16 15 19 19 O 1.44715 * 104.70873 * 336.28313 * 18 17 16 20 20 C 1.44557 * 105.46818 * 39.97439 * 19 18 17 21 21 C 1.47059 * 120.68961 * 270.02088 * 12 9 7 22 22 H 0.97004 * 119.99643 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.56588 * 114.27448 * 13 12 9 24 24 H 1.09004 * 109.65283 * 353.99001 * 13 12 9 25 25 H 1.08998 * 109.49926 * 184.91964 * 14 13 12 26 26 H 1.08990 * 109.50394 * 64.79572 * 14 13 12 27 27 H 1.09007 * 109.44714 * 300.30608 * 15 14 13 28 28 H 1.09003 * 109.44401 * 180.40633 * 15 14 13 29 29 H 1.09002 * 110.54923 * 237.48129 * 17 16 15 30 30 H 1.08997 * 110.54740 * 0.14608 * 17 16 15 31 31 H 1.09002 * 110.37145 * 95.00989 * 18 17 16 32 32 H 1.08999 * 110.37381 * 217.34756 * 18 17 16 33 33 H 1.08998 * 110.39230 * 201.30680 * 20 19 18 34 34 H 1.09000 * 110.49137 * 78.96863 * 20 19 18 35 35 H 1.08990 * 109.58131 * 7.55511 * 21 12 9 36 36 H 1.09001 * 109.58052 * 247.14361 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0461 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1942 0.0012 10 8 4.1673 -0.6496 1.2510 11 8 4.1682 -0.6501 -1.2485 12 7 4.2566 -2.7760 0.0011 13 6 4.4790 -3.4921 -1.2625 14 6 3.6488 -4.7795 -1.2564 15 6 3.9978 -5.6003 -0.0116 16 6 3.6787 -4.7924 1.2404 17 6 2.1704 -4.4913 1.3124 18 6 1.7145 -5.1762 2.6215 19 8 2.6976 -6.2119 2.8560 20 6 3.9698 -5.6230 2.5031 21 6 4.4778 -3.4934 1.2656 22 1 -0.4850 0.8401 -0.0004 23 1 5.5360 -3.7398 -1.3606 24 1 4.1722 -2.8639 -2.0988 25 1 3.8730 -5.3612 -2.1505 26 1 2.5883 -4.5285 -1.2412 27 1 5.0599 -5.8453 -0.0244 28 1 3.4136 -6.5206 -0.0082 29 1 1.9968 -3.4164 1.3624 30 1 1.6530 -4.9219 0.4551 31 1 1.7145 -4.4608 3.4439 32 1 0.7232 -5.6119 2.4965 33 1 4.7013 -6.4012 2.2855 34 1 4.3284 -4.9796 3.3066 35 1 4.1443 -2.8755 2.0992 36 1 5.5383 -3.7191 1.3769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192954236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:42 Heat of formation + Delta-G solvation = -152.571583 kcal Electronic energy + Delta-G solvation = -21233.778321 eV Core-core repulsion = 18036.466314 eV Total energy + Delta-G solvation = -3197.312007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26229 -38.16752 -37.75030 -36.50131 -35.18867 -33.68537 -32.62854 -30.70499 -28.52657 -26.82308 -25.53651 -23.64126 -22.95813 -20.82550 -19.80332 -19.16007 -18.67232 -17.25628 -17.10940 -17.03662 -16.58967 -15.95788 -15.54577 -15.45958 -15.10524 -14.99591 -14.81127 -14.40263 -14.11459 -13.67491 -13.46494 -13.30824 -13.00554 -12.79833 -12.66200 -12.47056 -12.38460 -12.28253 -11.94099 -11.81568 -11.70803 -11.34678 -11.30959 -11.27916 -11.01125 -10.60967 -9.72554 -8.95487 -7.48888 0.10489 1.02510 1.11094 1.18843 1.87342 2.41996 2.44287 3.05131 3.37098 3.56919 3.68275 3.81446 4.04890 4.17701 4.20859 4.24538 4.30986 4.31251 4.53934 4.60003 4.70706 4.74550 4.87282 4.89597 4.90674 4.91843 5.07498 5.12135 5.21591 5.30320 5.36947 5.46138 5.51700 5.86419 5.88724 6.07888 6.56307 8.21238 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.008047 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.086064 B = 3478.857875 C = 3925.943843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.113 3.887 3 Si 0.817 3.183 4 H -0.242 1.242 5 H -0.222 1.222 6 H -0.231 1.231 7 C -1.029 5.029 8 H 0.115 0.885 9 S 2.688 3.312 10 O -1.028 7.028 11 O -1.031 7.031 12 N -0.995 5.995 13 C 0.115 3.885 14 C -0.134 4.134 15 C -0.091 4.091 16 C -0.101 4.101 17 C -0.157 4.157 18 C 0.047 3.953 19 O -0.389 6.389 20 C 0.057 3.943 21 C 0.132 3.868 22 H 0.289 0.711 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 -11.978 1.475 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.104 4.104 3 Si 0.635 3.365 4 H -0.166 1.166 5 H -0.144 1.144 6 H -0.154 1.154 7 C -1.162 5.162 8 H 0.133 0.867 9 S 2.790 3.210 10 O -1.019 7.019 11 O -1.021 7.021 12 N -0.834 5.834 13 C -0.009 4.009 14 C -0.173 4.173 15 C -0.128 4.128 16 C -0.103 4.103 17 C -0.195 4.195 18 C -0.030 4.030 19 O -0.308 6.308 20 C -0.020 4.020 21 C 0.007 3.993 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.873 -11.348 1.553 13.899 hybrid contribution -1.009 1.106 -0.150 1.505 sum 6.865 -10.242 1.403 12.409 Atomic orbital electron populations 1.70009 1.07245 1.30201 1.40663 1.25062 0.95489 1.00999 0.88807 0.87611 0.82967 0.83593 0.82354 1.16598 1.14394 1.15401 1.31063 1.17737 1.01709 1.65713 0.86668 1.00807 0.76129 0.71849 0.72229 1.93416 1.85140 1.77386 1.45909 1.93359 1.85137 1.77487 1.46110 1.57341 1.83900 1.29640 1.12483 1.21576 1.01386 0.94041 0.83928 1.21977 0.99772 0.95802 0.99750 1.21382 1.02898 0.97175 0.91369 1.21867 0.94679 0.95650 0.98117 1.23133 0.95960 1.01538 0.98822 1.23504 0.93544 0.90042 0.95907 1.89101 1.17194 1.36450 1.88086 1.23524 0.86889 0.97435 0.94188 1.21458 1.00978 0.92365 0.84477 0.90021 0.88964 0.90950 0.88137 0.93125 0.89196 0.90622 0.91859 0.90630 0.92380 0.88329 0.86250 0.91436 0.90935 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.60 13.96 21.45 0.30 -48.30 16 2 C 0.11 6.43 5.47 84.66 0.46 6.89 16 3 Si 0.82 41.10 26.54 68.60 1.82 42.92 16 4 H -0.24 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.22 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.23 -12.02 5.61 99.48 0.56 -11.46 16 7 C -1.03 -56.50 9.68 67.73 0.66 -55.85 16 8 H 0.12 6.38 6.66 -2.91 -0.02 6.36 16 9 S 2.69 132.60 4.19 -56.49 -0.24 132.36 16 10 O -1.03 -54.32 14.76 -128.00 -1.89 -56.21 16 11 O -1.03 -54.48 15.54 -128.00 -1.99 -56.47 16 12 N -0.99 -36.61 3.11 -513.93 -1.60 -38.21 16 13 C 0.12 3.45 6.36 86.36 0.55 4.00 16 14 C -0.13 -3.30 5.88 30.71 0.18 -3.12 16 15 C -0.09 -1.92 4.44 30.44 0.14 -1.79 16 16 C -0.10 -2.63 0.69 -51.91 -0.04 -2.66 16 17 C -0.16 -4.92 5.65 31.47 0.18 -4.74 16 18 C 0.05 1.30 7.67 72.53 0.56 1.86 16 19 O -0.39 -10.50 11.66 -148.98 -1.74 -12.24 16 20 C 0.06 1.26 6.74 72.29 0.49 1.74 16 21 C 0.13 4.03 4.71 86.12 0.41 4.44 16 22 H 0.29 14.99 8.31 -92.71 -0.77 14.22 16 23 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 24 H 0.07 2.44 7.12 -2.39 -0.02 2.42 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.49 6.67 -2.39 -0.02 1.47 16 27 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.46 5.56 -2.39 -0.01 2.45 16 30 H 0.08 2.34 6.59 -2.39 -0.02 2.32 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.12 1.96 7.85 -2.39 -0.02 1.94 16 34 H 0.07 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.07 2.50 7.13 -2.39 -0.02 2.48 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -68.01 287.61 -0.83 -68.84 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.93 Total: 16.53 kcal Atomic # 6 Polarization: -52.79 SS G_CDS: 3.58 Total: -49.22 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.30 Total: -86.51 kcal Atomic # 8 Polarization: -119.30 SS G_CDS: -5.62 Total: -124.91 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.82 Total: 42.92 kcal Atomic # 16 Polarization: 132.60 SS G_CDS: -0.24 Total: 132.36 kcal Total: -68.01 -0.83 -68.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192954236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.736 kcal (2) G-P(sol) polarization free energy of solvation -68.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds