Wall clock time and date at job start Mon Mar 30 2020 01:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.46927 * 120.62247 * 269.71684 * 12 9 7 14 14 C 1.52742 * 109.01874 * 233.87861 * 13 12 9 15 15 C 1.52850 * 109.43032 * 305.99040 * 14 13 12 16 16 C 1.54243 * 109.38961 * 180.81340 * 15 14 13 17 17 C 1.55340 * 102.19997 * 98.33028 * 16 15 14 18 18 C 1.54968 * 100.95452 * 34.01480 * 17 16 15 19 19 O 1.43045 * 110.03437 * 299.02058 * 15 14 13 20 20 C 1.52854 * 110.16914 * 60.53011 * 15 14 13 21 21 C 1.46928 * 120.62396 * 90.00054 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.58846 * 353.71577 * 13 12 9 24 24 H 1.09004 * 109.58764 * 114.14456 * 13 12 9 25 25 H 1.09002 * 109.57006 * 185.93097 * 14 13 12 26 26 H 1.09006 * 109.34188 * 65.90880 * 14 13 12 27 27 H 1.09001 * 110.86116 * 216.51193 * 16 15 14 28 28 H 1.09007 * 110.85459 * 340.15522 * 16 15 14 29 29 H 1.08995 * 111.12323 * 276.09188 * 17 16 15 30 30 H 1.08996 * 111.15598 * 151.94909 * 17 16 15 31 31 H 1.09004 * 110.30615 * 204.73150 * 18 17 16 32 32 H 1.09000 * 110.30559 * 82.56431 * 18 17 16 33 33 H 1.08997 * 109.49389 * 179.37779 * 20 15 14 34 34 H 1.08996 * 109.50833 * 59.31593 * 20 15 14 35 35 H 1.08998 * 109.58962 * 245.86274 * 21 12 9 36 36 H 1.09008 * 109.58768 * 6.14518 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.7520 -4.4833 -1.2785 14 6 2.5656 -5.9993 -1.2743 15 6 3.2177 -6.5883 -0.0235 16 6 3.0468 -8.1212 -0.0305 17 6 4.4163 -8.6017 -0.5840 18 6 5.3665 -7.5327 0.0126 19 8 4.6199 -6.3054 -0.0225 20 6 2.5657 -6.0106 1.2325 21 6 2.7564 -4.4904 1.2502 22 1 -0.4850 0.8401 -0.0004 23 1 2.1964 -4.0506 -2.1105 24 1 3.8114 -4.2486 -1.3825 25 1 3.0308 -6.4268 -2.1625 26 1 1.5007 -6.2322 -1.2732 27 1 2.8823 -8.4980 0.9790 28 1 2.2343 -8.4181 -0.6938 29 1 4.4306 -8.5758 -1.6735 30 1 4.6630 -9.5968 -0.2139 31 1 6.2669 -7.4452 -0.5956 32 1 5.6262 -7.7884 1.0398 33 1 3.0310 -6.4458 2.1168 34 1 1.5009 -6.2435 1.2299 35 1 3.8160 -4.2562 1.3519 36 1 2.2052 -4.0606 2.0867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:39 Heat of formation + Delta-G solvation = -142.044089 kcal Electronic energy + Delta-G solvation = -20677.274493 eV Core-core repulsion = 17480.418993 eV Total energy + Delta-G solvation = -3196.855500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14380 -36.41296 -35.23348 -33.89022 -33.02123 -32.36689 -31.11423 -30.70578 -26.28096 -25.99384 -23.15741 -22.59826 -21.36841 -19.59005 -18.65585 -17.31536 -16.37068 -16.17413 -15.57930 -14.96716 -14.90277 -14.48912 -14.20174 -13.69964 -13.50514 -13.41117 -13.14151 -12.84435 -12.10908 -11.94921 -11.84938 -11.67317 -11.41361 -11.19942 -11.16386 -10.96287 -10.89661 -10.57735 -10.55933 -10.54461 -10.22430 -10.02084 -9.80405 -9.28631 -9.19365 -8.83801 -8.06558 -6.63888 -5.25236 2.35084 3.10785 3.17127 3.24646 3.82765 4.11094 4.42786 4.60861 4.69228 4.71315 4.83791 4.98966 5.13461 5.21610 5.47276 5.51924 5.60378 5.62883 5.70431 5.79523 5.84343 5.89589 5.94718 6.02059 6.02745 6.15995 6.25249 6.30416 6.43272 6.61341 6.64052 6.97965 7.20577 7.38803 7.70562 8.05522 8.95183 10.29409 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.036326 B = 0.005516 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.614117 B = 5075.338762 C = 5305.702082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.006 7.006 12 N -1.011 6.011 13 C 0.128 3.872 14 C -0.131 4.131 15 C 0.113 3.887 16 C -0.148 4.148 17 C -0.156 4.156 18 C 0.049 3.951 19 O -0.363 6.363 20 C -0.133 4.133 21 C 0.129 3.871 22 H 0.290 0.710 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 -14.503 -0.285 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.818 3.182 10 O -0.996 6.996 11 O -0.996 6.996 12 N -0.846 5.846 13 C 0.002 3.998 14 C -0.170 4.170 15 C 0.073 3.927 16 C -0.185 4.185 17 C -0.194 4.194 18 C -0.028 4.028 19 O -0.282 6.282 20 C -0.173 4.173 21 C 0.003 3.997 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.882 -14.350 -0.286 16.374 hybrid contribution 0.970 0.905 0.008 1.326 sum 8.851 -13.445 -0.277 16.099 Atomic orbital electron populations 1.69904 1.06774 1.30624 1.40458 1.24761 0.94453 1.00799 0.88512 0.86173 0.80206 0.80083 0.79142 1.19217 1.20012 1.18666 1.30667 1.06208 1.11957 1.66472 0.87966 1.00418 0.72120 0.72992 0.72710 1.93338 1.72876 1.87627 1.45783 1.93336 1.72892 1.87656 1.45749 1.58090 1.62496 1.54206 1.09822 1.21020 0.99834 0.92343 0.86576 1.22084 1.00744 0.97452 0.96748 1.21874 0.81917 0.93132 0.95762 1.23235 0.98078 0.95054 1.02169 1.23248 0.95233 0.99408 1.01471 1.23346 0.95178 0.84362 0.99881 1.88478 1.16356 1.28282 1.95100 1.22192 1.00900 0.97508 0.96659 1.21116 0.99782 0.92166 0.86679 0.89974 0.89120 0.91867 0.91027 0.90703 0.90500 0.89976 0.90491 0.90370 0.90146 0.92570 0.91095 0.90654 0.91850 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.40 13.19 55.43 0.73 -24.67 16 2 C 0.13 3.78 5.46 -17.82 -0.10 3.68 16 3 Si 0.92 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.42 16 7 C -1.02 -28.96 9.75 30.60 0.30 -28.66 16 8 H 0.10 2.70 7.81 -52.49 -0.41 2.29 16 9 S 2.72 74.04 5.01 -107.50 -0.54 73.51 16 10 O -1.01 -29.75 16.61 -57.17 -0.95 -30.70 16 11 O -1.01 -29.74 16.60 -57.17 -0.95 -30.69 16 12 N -1.01 -21.51 3.29 -113.76 -0.37 -21.88 16 13 C 0.13 2.36 6.24 -3.94 -0.02 2.34 16 14 C -0.13 -1.95 4.91 -26.94 -0.13 -2.08 16 15 C 0.11 1.53 0.78 -90.12 -0.07 1.46 16 16 C -0.15 -1.51 6.06 -24.84 -0.15 -1.67 16 17 C -0.16 -1.36 7.16 -24.45 -0.18 -1.53 16 18 C 0.05 0.50 7.78 38.20 0.30 0.80 16 19 O -0.36 -5.12 9.69 -35.23 -0.34 -5.46 16 20 C -0.13 -1.98 4.95 -26.69 -0.13 -2.12 16 21 C 0.13 2.37 6.27 -3.70 -0.02 2.35 16 22 H 0.29 7.79 8.31 -40.82 -0.34 7.46 16 23 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 24 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 0.72 7.83 -51.93 -0.41 0.32 16 28 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 36 H 0.09 1.76 6.92 -51.92 -0.36 1.40 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -35.15 301.11 -8.39 -43.54 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.28 Total: 1.19 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -0.21 Total: -25.42 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.36 Total: -46.56 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -2.24 Total: -66.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 74.04 SS G_CDS: -0.54 Total: 73.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.15 -8.39 -43.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.503 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds