Wall clock time and date at job start Mon Mar 30 2020 01:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47374 * 239.99992 * 3 2 1 5 5 H 1.48500 * 109.47564 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47150 * 120.00061 * 3 2 1 7 7 C 1.37877 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00235 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99696 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40303 * 66.46363 * 9 7 2 11 11 O 1.42096 * 106.40377 * 293.53945 * 9 7 2 12 12 N 1.65608 * 107.21643 * 180.02562 * 9 7 2 13 13 C 1.47480 * 125.66141 * 269.69696 * 12 9 7 14 14 C 1.55283 * 104.77922 * 155.88675 * 13 12 9 15 15 C 1.54469 * 101.42026 * 36.65776 * 14 13 12 16 16 C 1.47192 * 125.65968 * 90.00116 * 12 9 7 17 17 C 1.52360 * 110.24242 * 83.55745 * 15 14 13 18 18 C 1.53324 * 109.10237 * 177.61522 * 17 15 14 19 19 C 1.53100 * 109.05755 * 304.18121 * 18 17 15 20 20 O 1.42904 * 109.54852 * 58.22905 * 19 18 17 21 21 C 1.43045 * 114.01317 * 298.28268 * 20 19 18 22 22 H 0.96999 * 119.99975 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.34915 * 274.84461 * 13 12 9 24 24 H 1.08993 * 110.35663 * 37.13481 * 13 12 9 25 25 H 1.09006 * 111.23263 * 278.56085 * 14 13 12 26 26 H 1.09003 * 110.93513 * 154.62384 * 14 13 12 27 27 H 1.09001 * 109.90804 * 300.90404 * 16 12 9 28 28 H 1.08998 * 109.91043 * 62.17290 * 16 12 9 29 29 H 1.08999 * 109.53244 * 297.50871 * 17 15 14 30 30 H 1.09005 * 109.53226 * 57.72669 * 17 15 14 31 31 H 1.09006 * 109.53530 * 184.30499 * 18 17 15 32 32 H 1.09002 * 109.60801 * 64.09678 * 18 17 15 33 33 H 1.09004 * 109.45779 * 298.20454 * 19 18 17 34 34 H 1.08999 * 109.45518 * 178.25879 * 19 18 17 35 35 H 1.09002 * 109.46702 * 299.83319 * 21 20 19 36 36 H 1.09002 * 109.46523 * 179.86296 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9354 -0.0005 13 6 2.8277 -4.5708 -1.1988 14 6 4.1929 -5.1391 -0.7249 15 6 3.8491 -5.6070 0.7065 16 6 2.8312 -4.5652 1.1954 17 6 3.2232 -6.9957 0.6711 18 6 2.9477 -7.4586 2.1066 19 6 4.2507 -7.4030 2.9085 20 8 4.7681 -6.0711 2.8883 21 6 5.0961 -5.5938 1.5803 22 1 -0.4850 0.8400 -0.0004 23 1 2.1814 -5.3744 -1.5516 24 1 2.9780 -3.8310 -1.9850 25 1 4.9592 -4.3640 -0.7093 26 1 4.5021 -5.9791 -1.3470 27 1 3.3330 -3.8129 1.8038 28 1 2.0490 -5.0544 1.7759 29 1 2.2871 -6.9594 0.1139 30 1 3.9089 -7.6923 0.1888 31 1 2.5708 -8.4814 2.0938 32 1 2.2081 -6.8033 2.5668 33 1 4.9790 -8.0823 2.4655 34 1 4.0560 -7.7014 3.9387 35 1 5.8561 -6.2382 1.1385 36 1 5.4795 -4.5758 1.6507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:35 Heat of formation + Delta-G solvation = -171.181074 kcal Electronic energy + Delta-G solvation = -20662.094169 eV Core-core repulsion = 17463.975194 eV Total energy + Delta-G solvation = -3198.118975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26501 -38.21784 -37.47036 -36.20191 -35.23007 -34.09460 -32.45898 -30.25210 -28.30142 -26.76946 -26.02686 -23.77443 -22.48263 -20.78686 -19.87689 -19.28810 -18.34768 -17.22515 -17.00592 -16.79515 -16.62123 -16.17882 -15.84306 -15.43829 -15.16096 -14.46294 -14.28613 -14.00817 -13.81620 -13.62422 -13.33997 -13.31370 -13.02505 -12.62505 -12.57825 -12.50870 -12.49602 -12.34365 -12.14100 -12.03865 -11.81624 -11.27223 -11.26059 -11.10154 -11.01331 -10.28817 -9.78280 -8.77668 -7.53080 0.23238 1.30892 1.33892 1.47086 2.18161 2.53879 2.86043 2.99420 3.54686 3.61779 3.64644 3.80467 4.05235 4.10385 4.18094 4.36871 4.39517 4.46202 4.54412 4.65781 4.67913 4.73202 4.79836 4.87492 4.96073 5.06379 5.08523 5.10176 5.16668 5.18473 5.35300 5.40191 5.47125 5.80682 5.87107 6.35053 6.73437 8.17564 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.005942 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.539908 B = 4710.924741 C = 4940.605407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.067 3.933 3 Si 0.993 3.007 4 H -0.247 1.247 5 H -0.262 1.262 6 H -0.251 1.251 7 C -1.040 5.040 8 H 0.118 0.882 9 S 2.730 3.270 10 O -1.039 7.039 11 O -1.044 7.044 12 N -1.024 6.024 13 C 0.110 3.890 14 C -0.105 4.105 15 C -0.097 4.097 16 C 0.133 3.867 17 C -0.106 4.106 18 C -0.162 4.162 19 C 0.058 3.942 20 O -0.406 6.406 21 C 0.078 3.922 22 H 0.300 0.700 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -13.696 0.706 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.810 3.190 4 H -0.171 1.171 5 H -0.185 1.185 6 H -0.175 1.175 7 C -1.174 5.174 8 H 0.137 0.863 9 S 2.834 3.166 10 O -1.029 7.029 11 O -1.034 7.034 12 N -0.863 5.863 13 C -0.014 4.014 14 C -0.143 4.143 15 C -0.099 4.099 16 C 0.008 3.992 17 C -0.144 4.144 18 C -0.200 4.200 19 C -0.018 4.018 20 O -0.325 6.325 21 C 0.001 3.999 22 H 0.110 0.890 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.137 0.863 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.500 -13.610 0.873 18.500 hybrid contribution -0.114 1.253 -0.112 1.263 sum 12.386 -12.357 0.761 17.513 Atomic orbital electron populations 1.69989 1.08861 1.32505 1.41391 1.26099 0.95438 1.05533 0.87446 0.85128 0.78786 0.74219 0.80821 1.17065 1.18550 1.17476 1.30933 1.07101 1.12557 1.66792 0.86340 0.99573 0.72292 0.73438 0.71327 1.93292 1.74345 1.88388 1.46924 1.93287 1.74604 1.88375 1.47169 1.58683 1.61324 1.52783 1.13494 1.22227 0.95333 0.97021 0.86862 1.22823 0.95251 1.02157 0.94092 1.21757 0.95856 0.95324 0.96987 1.21707 0.95800 0.95110 0.86598 1.21527 1.01435 0.94274 0.97118 1.22295 0.98864 1.02712 0.96105 1.22721 0.94074 0.83442 1.01560 1.87973 1.83889 1.31968 1.28665 1.22560 0.93924 1.01057 0.82340 0.89003 0.91546 0.91444 0.89410 0.86298 0.92952 0.93381 0.92411 0.88185 0.88660 0.93445 0.90819 0.88316 0.89524 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.16 13.19 21.45 0.28 -54.88 16 2 C 0.07 3.87 5.46 84.65 0.46 4.33 16 3 Si 0.99 42.23 29.54 68.60 2.03 44.26 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 7 C -1.04 -59.63 9.75 67.73 0.66 -58.97 16 8 H 0.12 6.12 7.81 -2.91 -0.02 6.10 16 9 S 2.73 155.80 5.22 -56.49 -0.30 155.50 16 10 O -1.04 -64.71 17.60 -128.00 -2.25 -66.97 16 11 O -1.04 -66.37 17.60 -128.00 -2.25 -68.62 16 12 N -1.02 -43.75 3.70 -506.45 -1.88 -45.62 16 13 C 0.11 3.62 6.69 86.98 0.58 4.20 16 14 C -0.10 -2.29 6.01 31.88 0.19 -2.10 16 15 C -0.10 -2.37 0.54 -51.92 -0.03 -2.40 16 16 C 0.13 4.87 5.89 86.46 0.51 5.38 16 17 C -0.11 -2.15 4.62 30.49 0.14 -2.01 16 18 C -0.16 -3.22 5.94 30.74 0.18 -3.04 16 19 C 0.06 1.04 6.81 72.02 0.49 1.53 16 20 O -0.41 -9.90 10.64 -148.98 -1.59 -11.49 16 21 C 0.08 1.62 5.40 71.74 0.39 2.01 16 22 H 0.30 16.53 8.31 -92.71 -0.77 15.76 16 23 H 0.07 2.03 7.84 -2.39 -0.02 2.01 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.09 1.79 8.02 -2.38 -0.02 1.78 16 26 H 0.12 1.70 8.00 -2.39 -0.02 1.68 16 27 H 0.05 2.00 7.72 -2.39 -0.02 1.98 16 28 H 0.05 1.88 6.32 -2.39 -0.02 1.86 16 29 H 0.06 1.36 7.62 -2.39 -0.02 1.34 16 30 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 1.23 6.69 -2.39 -0.02 1.21 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 2.00 8.02 -2.39 -0.02 1.99 16 Total: -1.00 -81.24 301.15 -1.31 -82.54 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.07 Total: 16.34 kcal Atomic # 6 Polarization: -54.64 SS G_CDS: 3.58 Total: -51.06 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -1.59 Total: -100.50 kcal Atomic # 8 Polarization: -140.98 SS G_CDS: -6.09 Total: -147.08 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 155.80 SS G_CDS: -0.30 Total: 155.50 kcal Total: -81.24 -1.31 -82.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.637 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds