Wall clock time and date at job start Mon Mar 30 2020 01:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99376 * 2 1 4 4 H 1.08005 * 119.99554 * 202.37096 * 3 2 1 5 5 C 1.38807 * 120.00201 * 22.37910 * 3 2 1 6 6 N 1.31620 * 120.00145 * 11.32320 * 5 3 2 7 7 Si 1.86805 * 120.00101 * 191.32601 * 5 3 2 8 8 H 1.48506 * 109.46866 * 59.99507 * 7 5 3 9 9 H 1.48500 * 109.47349 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47042 * 300.00117 * 7 5 3 11 11 C 1.46496 * 120.00525 * 179.97438 * 2 1 3 12 12 C 1.50703 * 109.46964 * 270.00418 * 11 2 1 13 13 C 1.38288 * 119.93922 * 270.24514 * 12 11 2 14 14 C 1.38122 * 120.05244 * 180.25359 * 13 12 11 15 15 C 1.38754 * 119.94847 * 359.50042 * 14 13 12 16 16 O 1.35895 * 120.06097 * 180.27385 * 15 14 13 17 17 C 1.38712 * 119.88378 * 0.24841 * 15 14 13 18 18 C 1.50700 * 120.03102 * 180.02562 * 17 15 14 19 19 F 1.39894 * 109.47399 * 180.02562 * 18 17 15 20 20 F 1.39904 * 109.46773 * 300.00566 * 18 17 15 21 21 F 1.39898 * 109.47252 * 59.99828 * 18 17 15 22 22 C 1.38168 * 119.94563 * 0.02562 * 17 15 14 23 23 H 1.09001 * 109.47509 * 274.20109 * 1 2 3 24 24 H 1.08997 * 109.47320 * 34.20919 * 1 2 3 25 25 H 1.08999 * 109.46892 * 154.20804 * 1 2 3 26 26 H 0.97000 * 119.99763 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47517 * 150.00035 * 11 2 1 28 28 H 1.09007 * 109.46953 * 29.99708 * 11 2 1 29 29 H 1.08004 * 119.97749 * 0.02910 * 13 12 11 30 30 H 1.08003 * 120.02704 * 179.77193 * 14 13 12 31 31 H 0.96701 * 114.00033 * 89.99747 * 16 15 14 32 32 H 1.08003 * 119.97563 * 179.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1860 0.0000 4 1 3.1686 1.2212 -0.3560 5 6 1.5338 2.3428 0.4577 6 7 0.3843 2.2687 1.0944 7 14 2.3367 4.0048 0.1699 8 1 2.4913 4.2337 -1.2893 9 1 1.4846 5.0734 0.7506 10 1 3.6722 4.0284 0.8188 11 6 2.1976 -1.2686 0.0006 12 6 2.4487 -1.7030 1.4216 13 6 3.5990 -1.2985 2.0739 14 6 3.8340 -1.6996 3.3746 15 6 2.9099 -2.5005 4.0302 16 8 3.1361 -2.8918 5.3118 17 6 1.7543 -2.9005 3.3754 18 6 0.7481 -3.7699 4.0845 19 9 -0.3230 -4.0390 3.2258 20 9 1.3553 -4.9721 4.4630 21 9 0.2784 -3.1061 5.2229 22 6 1.5266 -2.5013 2.0724 23 1 -0.3634 0.0753 1.0249 24 1 -0.3634 0.8498 -0.5777 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0461 3.0772 1.4139 27 1 3.1500 -1.1385 -0.5133 28 1 1.6085 -2.0286 -0.5129 29 1 4.3160 -0.6715 1.5648 30 1 4.7343 -1.3865 3.8824 31 1 2.7850 -2.2836 5.9766 32 1 0.6272 -2.8129 1.5619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231523052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:55 Heat of formation + Delta-G solvation = -145.446764 kcal Electronic energy + Delta-G solvation = -21689.713410 eV Core-core repulsion = 17815.409667 eV Total energy + Delta-G solvation = -3874.303743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.91679 -47.45273 -47.36625 -39.62232 -37.02788 -35.24742 -31.96607 -31.48289 -29.72002 -26.31266 -25.63637 -25.40183 -22.28770 -21.87645 -20.52064 -18.59632 -18.24807 -18.13303 -17.23429 -16.81746 -15.44153 -15.39859 -14.98949 -14.36101 -14.27531 -14.12198 -13.83162 -13.72779 -13.68564 -13.55318 -13.42029 -13.25572 -12.56589 -12.24768 -11.93888 -11.84548 -11.30503 -10.98778 -10.92631 -10.74147 -10.46406 -10.31875 -10.12124 -9.99570 -8.89334 -8.66204 -8.24456 -6.91551 -5.85032 -3.29541 1.24797 1.54499 2.91639 3.30964 3.37102 3.37594 3.73768 3.95929 4.25564 4.32485 4.41251 4.68848 5.12078 5.27988 5.46572 5.57721 5.63394 5.68402 5.83892 6.02786 6.26147 6.40237 6.48106 6.56126 6.67830 7.01583 7.04002 7.29188 7.62687 7.67486 7.70310 8.26092 9.09742 9.71636 10.20299 11.18984 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.005562 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.108538 B = 5032.822989 C = 5317.816113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.589 5.589 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.901 5.901 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.179 3.821 12 C -0.087 4.087 13 C -0.056 4.056 14 C -0.147 4.147 15 C 0.129 3.871 16 O -0.497 6.497 17 C -0.214 4.214 18 C 0.516 3.484 19 F -0.180 7.180 20 F -0.177 7.177 21 F -0.182 7.182 22 C -0.055 4.055 23 H 0.029 0.971 24 H 0.049 0.951 25 H 0.000 1.000 26 H 0.255 0.745 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.391 0.609 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -9.742 4.562 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.309 5.309 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.052 3.948 12 C -0.092 4.092 13 C -0.075 4.075 14 C -0.165 4.165 15 C 0.084 3.916 16 O -0.307 6.307 17 C -0.216 4.216 18 C 0.462 3.538 19 F -0.161 7.161 20 F -0.158 7.158 21 F -0.164 7.164 22 C -0.074 4.074 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.247 0.753 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.101 -10.057 4.335 11.382 hybrid contribution -0.122 1.340 0.632 1.487 sum 2.978 -8.716 4.967 10.465 Atomic orbital electron populations 1.20872 0.82061 0.95944 0.99511 1.44185 1.02104 1.00258 1.84356 1.19202 0.98423 0.85024 1.36080 0.91127 1.25099 0.97616 0.98748 0.97962 1.70061 1.17558 1.27511 1.39327 0.86308 0.78556 0.83493 0.78014 1.20873 1.21544 1.20841 1.20041 0.97076 0.88856 0.88863 1.21294 0.92634 0.93532 1.01705 1.21126 0.96947 0.96041 0.93402 1.21307 1.00061 0.98931 0.96212 1.17883 0.92258 0.96162 0.85312 1.84796 1.81247 1.51354 1.13347 1.20252 0.96404 1.07045 0.97941 1.18176 0.80098 0.78815 0.76742 1.93148 1.58474 1.94294 1.70201 1.93198 1.83104 1.47782 1.91741 1.93167 1.89570 1.80680 1.52939 1.20749 0.99183 0.95621 0.91837 0.95236 0.93266 0.98198 0.93461 0.92254 0.92951 0.85035 0.85131 0.75318 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 9.01 59.85 0.54 4.34 16 2 N -0.59 -13.94 2.91 -182.50 -0.53 -14.47 16 3 C -0.26 -6.65 9.67 -15.06 -0.15 -6.79 16 4 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 5 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 6 N -0.90 -25.35 10.59 55.49 0.59 -24.76 16 7 Si 0.91 20.97 29.57 -169.99 -5.03 15.94 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.18 3.40 5.83 -5.19 -0.03 3.37 16 12 C -0.09 -1.59 5.46 -104.60 -0.57 -2.16 16 13 C -0.06 -0.95 9.69 -39.61 -0.38 -1.34 16 14 C -0.15 -2.29 9.99 -39.43 -0.39 -2.68 16 15 C 0.13 2.07 6.59 -39.22 -0.26 1.81 16 16 O -0.50 -6.98 12.41 -19.41 -0.24 -7.22 16 17 C -0.21 -3.62 5.38 -104.47 -0.56 -4.18 16 18 C 0.52 8.24 2.99 36.01 0.11 8.35 16 19 F -0.18 -2.86 15.97 2.25 0.04 -2.82 16 20 F -0.18 -2.81 16.95 2.25 0.04 -2.77 16 21 F -0.18 -2.87 16.95 2.25 0.04 -2.83 16 22 C -0.05 -0.96 9.08 -39.61 -0.36 -1.32 16 23 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 24 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 25 H 0.00 -0.01 7.84 -51.93 -0.41 -0.42 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.06 1.06 7.98 -51.93 -0.41 0.64 16 28 H 0.05 0.89 7.81 -51.92 -0.41 0.49 16 29 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.39 3.97 9.06 45.56 0.41 4.38 16 32 H 0.13 2.22 7.16 -52.48 -0.38 1.84 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -29.19 292.22 -5.18 -34.37 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.34 Total: 0.71 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.15 Total: -0.55 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.06 Total: -39.23 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.24 Total: -7.22 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.11 Total: -8.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.19 -5.18 -34.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231523052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.072 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds