Wall clock time and date at job start Mon Mar 30 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99733 * 2 1 4 4 H 1.08005 * 119.99920 * 202.74544 * 3 2 1 5 5 C 1.38813 * 120.00205 * 22.73920 * 3 2 1 6 6 N 1.31614 * 119.99951 * 11.08447 * 5 3 2 7 7 Si 1.86801 * 119.99910 * 191.08504 * 5 3 2 8 8 H 1.48503 * 109.47207 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47308 * 119.99893 * 7 5 3 10 10 H 1.48496 * 109.47307 * 240.00088 * 7 5 3 11 11 C 1.46498 * 120.00347 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47030 * 270.00250 * 11 2 1 13 13 C 1.38165 * 120.02676 * 104.72070 * 12 11 2 14 14 C 1.38251 * 120.05189 * 179.76598 * 13 12 11 15 15 C 1.50705 * 119.94224 * 180.25560 * 14 13 12 16 16 F 1.39895 * 109.46994 * 180.25181 * 15 14 13 17 17 F 1.39901 * 109.46814 * 300.25405 * 15 14 13 18 18 F 1.39904 * 109.46974 * 60.25395 * 15 14 13 19 19 C 1.38286 * 120.11066 * 0.50861 * 14 13 12 20 20 C 1.38128 * 120.05674 * 359.74790 * 19 14 13 21 21 C 1.38710 * 120.02674 * 284.99462 * 12 11 2 22 22 O 1.35898 * 120.05501 * 0.02562 * 21 12 11 23 23 H 1.09001 * 109.46791 * 274.27338 * 1 2 3 24 24 H 1.08999 * 109.47347 * 34.27516 * 1 2 3 25 25 H 1.09002 * 109.46887 * 154.27964 * 1 2 3 26 26 H 0.97002 * 119.99895 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.46902 * 29.99884 * 11 2 1 28 28 H 1.09001 * 109.47483 * 150.00276 * 11 2 1 29 29 H 1.08002 * 119.97766 * 0.02562 * 13 12 11 30 30 H 1.07998 * 119.96985 * 179.71877 * 19 14 13 31 31 H 1.07996 * 120.02737 * 179.97438 * 20 19 14 32 32 H 0.96701 * 114.00338 * 89.99673 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1667 1.2223 -0.3616 5 6 1.5365 2.3414 0.4647 6 7 0.3882 2.2657 1.1032 7 14 2.3413 4.0035 0.1836 8 1 3.6166 3.8177 -0.5542 9 1 1.4311 4.8661 -0.6118 10 1 2.6158 4.6484 1.4928 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.7054 -2.7291 1.9726 14 6 1.9386 -3.1313 3.2746 15 6 1.1302 -4.2546 3.8711 16 9 1.5405 -4.4748 5.1903 17 9 -0.2262 -3.9123 3.8555 18 9 1.3260 -5.4194 3.1213 19 6 2.9088 -2.5011 4.0321 20 6 3.6511 -1.4713 3.4876 21 6 3.4225 -1.0693 2.1794 22 8 4.1508 -0.0558 1.6417 23 1 -0.3633 0.0766 1.0248 24 1 -0.3634 0.8492 -0.5787 25 1 -0.3633 -0.9259 -0.4460 26 1 -0.0405 3.0732 1.4276 27 1 1.6085 -2.0286 -0.5129 28 1 3.1501 -1.1386 -0.5133 29 1 0.9443 -3.2202 1.3843 30 1 3.0860 -2.8141 5.0504 31 1 4.4084 -0.9791 4.0797 32 1 3.7613 0.8199 1.7705 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237140329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:43 Heat of formation + Delta-G solvation = -147.337046 kcal Electronic energy + Delta-G solvation = -21744.715777 eV Core-core repulsion = 17870.330066 eV Total energy + Delta-G solvation = -3874.385712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.98524 -47.52382 -47.42822 -39.53810 -36.26396 -35.53740 -32.22392 -30.61150 -30.22989 -26.31476 -25.68925 -25.25630 -22.29141 -21.87114 -20.41031 -18.30517 -18.21553 -17.76672 -17.76550 -16.80082 -15.39309 -15.19087 -14.77342 -14.35702 -14.26569 -14.17720 -13.90554 -13.69290 -13.63694 -13.61698 -13.16643 -13.07537 -13.00194 -12.13641 -12.01158 -11.57833 -11.49991 -11.04149 -10.95927 -10.73186 -10.47310 -10.08059 -10.03275 -9.88911 -8.70945 -8.64066 -8.28758 -6.93122 -5.87847 -3.34448 1.27692 1.62335 2.87370 3.26784 3.36760 3.37773 3.72097 3.95908 4.23819 4.36979 4.63254 4.83062 5.12943 5.14235 5.32824 5.54912 5.58064 5.76907 5.92642 6.18206 6.26118 6.41673 6.48148 6.63131 6.70718 6.95014 7.04592 7.29785 7.64785 7.69689 8.24390 8.30472 9.07959 9.70607 10.21050 11.15251 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.005568 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.341162 B = 5027.709145 C = 5331.129590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.259 4.259 4 H 0.078 0.922 5 C 0.001 3.999 6 N -0.900 5.900 7 Si 0.901 3.099 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.185 3.815 12 C -0.111 4.111 13 C -0.056 4.056 14 C -0.205 4.205 15 C 0.511 3.489 16 F -0.183 7.183 17 F -0.178 7.178 18 F -0.182 7.182 19 C -0.073 4.073 20 C -0.161 4.161 21 C 0.174 3.826 22 O -0.498 6.498 23 H 0.029 0.971 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.254 0.746 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -9.903 4.542 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.389 4.389 4 H 0.096 0.904 5 C -0.198 4.198 6 N -0.544 5.544 7 Si 0.731 3.269 8 H -0.200 1.200 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.058 3.942 12 C -0.115 4.115 13 C -0.075 4.075 14 C -0.207 4.207 15 C 0.457 3.543 16 F -0.164 7.164 17 F -0.160 7.160 18 F -0.163 7.163 19 C -0.092 4.092 20 C -0.179 4.179 21 C 0.128 3.872 22 O -0.313 6.313 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.237 -10.177 4.401 11.550 hybrid contribution -0.253 1.240 0.414 1.332 sum 2.983 -8.936 4.814 10.580 Atomic orbital electron populations 1.20854 0.82227 0.95814 0.99450 1.44086 1.01963 1.00306 1.84973 1.19394 0.98647 0.85073 1.35766 0.90436 1.25147 0.97701 0.98605 0.98390 1.70086 1.17655 1.27325 1.39317 0.86234 0.78912 0.84177 0.77601 1.19985 1.21486 1.21621 1.19907 0.97001 0.88693 0.88641 1.21577 0.93371 0.94534 1.02050 1.20591 0.98321 0.95804 0.92805 1.19796 1.02714 1.00688 0.97464 1.18365 0.78186 0.82212 0.75523 1.93126 1.90274 1.95343 1.37697 1.93214 1.34382 1.92145 1.96243 1.93188 1.94959 1.51734 1.76418 1.20616 0.94147 0.95087 0.99303 1.21343 1.01953 0.99600 0.95032 1.18435 0.89038 0.89911 0.89776 1.84558 1.49112 1.18342 1.79325 0.95249 0.93439 0.98325 0.93543 0.93201 0.91769 0.85536 0.85131 0.85139 0.72895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 9.01 59.85 0.54 4.34 16 2 N -0.59 -13.83 2.91 -182.49 -0.53 -14.36 16 3 C -0.26 -6.40 7.18 -15.06 -0.11 -6.51 16 4 H 0.08 1.89 7.51 -52.48 -0.39 1.49 16 5 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 6 N -0.90 -24.49 10.59 55.49 0.59 -23.90 16 7 Si 0.90 20.19 29.57 -169.99 -5.03 15.17 16 8 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.18 3.65 5.53 -5.19 -0.03 3.62 16 12 C -0.11 -2.09 5.48 -104.47 -0.57 -2.66 16 13 C -0.06 -0.95 9.21 -39.60 -0.36 -1.32 16 14 C -0.21 -3.27 5.37 -104.60 -0.56 -3.83 16 15 C 0.51 7.53 3.32 36.01 0.12 7.65 16 16 F -0.18 -2.55 15.97 2.25 0.04 -2.51 16 17 F -0.18 -2.78 17.23 2.25 0.04 -2.75 16 18 F -0.18 -2.61 17.24 2.25 0.04 -2.57 16 19 C -0.07 -1.10 9.42 -39.60 -0.37 -1.47 16 20 C -0.16 -2.57 9.99 -39.43 -0.39 -2.97 16 21 C 0.17 3.23 6.66 -39.22 -0.26 2.97 16 22 O -0.50 -9.46 11.77 -19.42 -0.23 -9.68 16 23 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 24 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 25 H 0.00 -0.04 7.84 -51.93 -0.41 -0.44 16 26 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.05 0.89 7.68 -51.93 -0.40 0.49 16 28 H 0.06 1.27 7.90 -51.93 -0.41 0.86 16 29 H 0.13 1.98 8.00 -52.49 -0.42 1.56 16 30 H 0.13 1.65 7.15 -52.49 -0.38 1.27 16 31 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.41 7.84 7.31 45.56 0.33 8.18 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -26.91 287.28 -5.24 -32.15 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -2.39 Total: 4.39 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.09 Total: -0.25 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.06 Total: -38.27 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.23 Total: -9.68 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.11 Total: -7.83 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.91 -5.24 -32.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237140329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.190 kcal (2) G-P(sol) polarization free energy of solvation -26.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds