Wall clock time and date at job start Mon Mar 30 2020 01:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99733 * 2 1 4 4 H 1.08005 * 119.99920 * 202.74544 * 3 2 1 5 5 C 1.38813 * 120.00205 * 22.73920 * 3 2 1 6 6 N 1.31614 * 119.99951 * 11.08447 * 5 3 2 7 7 Si 1.86801 * 119.99910 * 191.08504 * 5 3 2 8 8 H 1.48503 * 109.47207 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47308 * 119.99893 * 7 5 3 10 10 H 1.48496 * 109.47307 * 240.00088 * 7 5 3 11 11 C 1.46498 * 120.00347 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47030 * 270.00250 * 11 2 1 13 13 C 1.38165 * 120.02676 * 104.72070 * 12 11 2 14 14 C 1.38251 * 120.05189 * 179.76598 * 13 12 11 15 15 C 1.50705 * 119.94224 * 180.25560 * 14 13 12 16 16 F 1.39895 * 109.46994 * 180.25181 * 15 14 13 17 17 F 1.39901 * 109.46814 * 300.25405 * 15 14 13 18 18 F 1.39904 * 109.46974 * 60.25395 * 15 14 13 19 19 C 1.38286 * 120.11066 * 0.50861 * 14 13 12 20 20 C 1.38128 * 120.05674 * 359.74790 * 19 14 13 21 21 C 1.38710 * 120.02674 * 284.99462 * 12 11 2 22 22 O 1.35898 * 120.05501 * 0.02562 * 21 12 11 23 23 H 1.09001 * 109.46791 * 274.27338 * 1 2 3 24 24 H 1.08999 * 109.47347 * 34.27516 * 1 2 3 25 25 H 1.09002 * 109.46887 * 154.27964 * 1 2 3 26 26 H 0.97002 * 119.99895 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.46902 * 29.99884 * 11 2 1 28 28 H 1.09001 * 109.47483 * 150.00276 * 11 2 1 29 29 H 1.08002 * 119.97766 * 0.02562 * 13 12 11 30 30 H 1.07998 * 119.96985 * 179.71877 * 19 14 13 31 31 H 1.07996 * 120.02737 * 179.97438 * 20 19 14 32 32 H 0.96701 * 114.00338 * 89.99673 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1667 1.2223 -0.3616 5 6 1.5365 2.3414 0.4647 6 7 0.3882 2.2657 1.1032 7 14 2.3413 4.0035 0.1836 8 1 3.6166 3.8177 -0.5542 9 1 1.4311 4.8661 -0.6118 10 1 2.6158 4.6484 1.4928 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.7054 -2.7291 1.9726 14 6 1.9386 -3.1313 3.2746 15 6 1.1302 -4.2546 3.8711 16 9 1.5405 -4.4748 5.1903 17 9 -0.2262 -3.9123 3.8555 18 9 1.3260 -5.4194 3.1213 19 6 2.9088 -2.5011 4.0321 20 6 3.6511 -1.4713 3.4876 21 6 3.4225 -1.0693 2.1794 22 8 4.1508 -0.0558 1.6417 23 1 -0.3633 0.0766 1.0248 24 1 -0.3634 0.8492 -0.5787 25 1 -0.3633 -0.9259 -0.4460 26 1 -0.0405 3.0732 1.4276 27 1 1.6085 -2.0286 -0.5129 28 1 3.1501 -1.1386 -0.5133 29 1 0.9443 -3.2202 1.3843 30 1 3.0860 -2.8141 5.0504 31 1 4.4084 -0.9791 4.0797 32 1 3.7613 0.8199 1.7705 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237140329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:42 Heat of formation + Delta-G solvation = -162.490495 kcal Electronic energy + Delta-G solvation = -21745.372880 eV Core-core repulsion = 17870.330066 eV Total energy + Delta-G solvation = -3875.042815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.15507 -48.67279 -48.61401 -40.90538 -37.68501 -37.27071 -33.90558 -31.97922 -31.80849 -28.08485 -27.41458 -26.52107 -23.80982 -23.32981 -21.89575 -19.47710 -19.39915 -19.17526 -19.05931 -18.63711 -16.87009 -16.73866 -16.35149 -15.61136 -15.52749 -15.47900 -15.35374 -15.06551 -14.87978 -14.87488 -14.78342 -14.54841 -14.31802 -13.70140 -13.37597 -13.25084 -12.89973 -12.78777 -12.62079 -12.42402 -12.19914 -11.94388 -11.79421 -11.34716 -10.62748 -9.94402 -9.68527 -8.81827 -7.80923 -5.29556 -0.05459 0.31443 1.48009 1.53451 1.61488 1.67396 2.36417 2.54606 2.74439 3.05525 3.29208 3.43397 3.52598 3.82712 3.88082 3.94417 4.21250 4.43663 4.56673 4.78674 4.85846 4.92123 5.01180 5.14780 5.20932 5.35897 5.54587 5.68904 5.71520 5.73902 6.34038 6.82891 7.15558 7.85791 8.31953 9.21659 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.005568 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.341162 B = 5027.709145 C = 5331.129590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.606 5.606 3 C -0.250 4.250 4 H 0.080 0.920 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.961 3.039 8 H -0.264 1.264 9 H -0.300 1.300 10 H -0.292 1.292 11 C 0.186 3.814 12 C -0.131 4.131 13 C -0.058 4.058 14 C -0.209 4.209 15 C 0.519 3.481 16 F -0.175 7.175 17 F -0.184 7.184 18 F -0.178 7.178 19 C -0.064 4.064 20 C -0.158 4.158 21 C 0.149 3.851 22 O -0.503 6.503 23 H 0.002 0.998 24 H 0.020 0.980 25 H 0.028 0.972 26 H 0.247 0.753 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -11.033 5.280 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.328 5.328 3 C -0.380 4.380 4 H 0.098 0.902 5 C -0.242 4.242 6 N -0.581 5.581 7 Si 0.790 3.210 8 H -0.189 1.189 9 H -0.227 1.227 10 H -0.219 1.219 11 C 0.060 3.940 12 C -0.135 4.135 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.465 3.535 16 F -0.157 7.157 17 F -0.165 7.165 18 F -0.160 7.160 19 C -0.082 4.082 20 C -0.176 4.176 21 C 0.103 3.897 22 O -0.318 6.318 23 H 0.020 0.980 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.174 -11.352 5.135 13.140 hybrid contribution -0.488 1.432 0.210 1.528 sum 3.685 -9.920 5.345 11.855 Atomic orbital electron populations 1.20570 0.82711 0.96060 0.97511 1.44233 1.01949 1.01306 1.85337 1.19576 0.98451 0.85758 1.34195 0.90230 1.25729 0.98287 1.01316 0.98914 1.70244 1.19210 1.27344 1.41254 0.85296 0.78144 0.80564 0.77006 1.18864 1.22718 1.21901 1.19925 0.96700 0.87627 0.89711 1.21439 0.94712 0.96000 1.01345 1.20727 0.98036 0.95448 0.93540 1.19979 1.02931 1.00993 0.97185 1.18125 0.77714 0.81899 0.75752 1.93143 1.90151 1.95266 1.37094 1.93210 1.34788 1.92216 1.96290 1.93199 1.94902 1.51445 1.76405 1.20988 0.92881 0.93932 1.00406 1.21599 1.02254 0.99581 0.94182 1.18760 0.89762 0.90119 0.91054 1.84550 1.49216 1.18282 1.79736 0.98006 0.96084 0.95378 0.94390 0.91277 0.92118 0.84435 0.82170 0.82791 0.73475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.36 9.01 127.77 1.15 9.51 16 2 N -0.61 -28.19 2.91 -731.28 -2.13 -30.32 16 3 C -0.25 -12.32 7.18 84.03 0.60 -11.72 16 4 H 0.08 3.84 7.51 -2.91 -0.02 3.82 16 5 C -0.05 -2.41 5.13 84.86 0.44 -1.97 16 6 N -0.93 -51.92 10.59 21.65 0.23 -51.69 16 7 Si 0.96 41.99 29.57 68.60 2.03 44.02 16 8 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 9 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 C 0.19 7.18 5.53 85.64 0.47 7.65 16 12 C -0.13 -4.79 5.48 -19.77 -0.11 -4.89 16 13 C -0.06 -1.89 9.21 22.26 0.21 -1.68 16 14 C -0.21 -6.15 5.37 -19.85 -0.11 -6.26 16 15 C 0.52 13.92 3.32 71.24 0.24 14.16 16 16 F -0.18 -4.33 15.97 44.97 0.72 -3.61 16 17 F -0.18 -5.34 17.23 44.97 0.77 -4.57 16 18 F -0.18 -4.67 17.24 44.97 0.78 -3.90 16 19 C -0.06 -1.73 9.42 22.25 0.21 -1.52 16 20 C -0.16 -4.68 9.99 22.37 0.22 -4.46 16 21 C 0.15 5.33 6.66 22.50 0.15 5.48 16 22 O -0.50 -18.83 11.77 -92.40 -1.09 -19.91 16 23 H 0.00 0.08 7.41 -2.39 -0.02 0.07 16 24 H 0.02 1.07 7.21 -2.39 -0.02 1.05 16 25 H 0.03 1.13 7.84 -2.39 -0.02 1.11 16 26 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 27 H 0.07 2.35 7.68 -2.39 -0.02 2.33 16 28 H 0.06 2.35 7.90 -2.39 -0.02 2.33 16 29 H 0.14 4.04 8.00 -2.91 -0.02 4.02 16 30 H 0.16 3.37 7.15 -2.91 -0.02 3.35 16 31 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.40 15.52 7.31 -74.06 -0.54 14.98 16 Total: -1.00 -56.71 287.28 5.41 -51.30 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.63 Total: 14.38 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 3.47 Total: 4.30 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.90 Total: -82.01 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.09 Total: -19.91 kcal Atomic # 9 Polarization: -14.35 SS G_CDS: 2.27 Total: -12.08 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -56.71 5.41 -51.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237140329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.190 kcal (2) G-P(sol) polarization free energy of solvation -56.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds