Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35795 * 117.00023 * 2 1 4 4 C 1.38592 * 120.54984 * 359.97436 * 3 2 1 5 5 N 1.31856 * 120.84892 * 180.02562 * 4 3 2 6 6 C 1.32117 * 122.12039 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.49415 * 180.02562 * 6 5 4 8 8 C 1.38178 * 121.00597 * 359.70808 * 6 5 4 9 9 C 1.39995 * 119.02757 * 0.56581 * 8 6 5 10 10 C 1.47732 * 120.95369 * 179.72553 * 9 8 6 11 11 N 1.32882 * 120.24800 * 128.42305 * 10 9 8 12 12 C 1.31988 * 120.07428 * 180.02562 * 11 10 9 13 13 C 1.39217 * 120.59114 * 0.02562 * 12 11 10 14 14 N 1.31588 * 120.51075 * 359.97438 * 13 12 11 15 15 C 1.33984 * 119.89493 * 0.02562 * 14 13 12 16 16 C 1.40793 * 120.28385 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99898 * 171.29894 * 16 15 14 18 18 C 1.40185 * 120.00131 * 351.29947 * 16 15 14 19 19 N 1.30671 * 120.00026 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99999 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47515 * 89.99805 * 20 18 16 22 22 H 1.48504 * 109.46976 * 210.00147 * 20 18 16 23 23 H 1.48501 * 109.47343 * 329.99736 * 20 18 16 24 24 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47056 * 300.00432 * 1 2 3 26 26 H 1.09001 * 109.46791 * 59.99865 * 1 2 3 27 27 H 1.07997 * 119.57702 * 0.04563 * 4 3 2 28 28 H 1.08002 * 120.48813 * 180.28886 * 8 6 5 29 29 H 1.07998 * 119.70170 * 179.97438 * 12 11 10 30 30 H 1.08002 * 119.74341 * 179.69995 * 13 12 11 31 31 H 0.97006 * 120.00019 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3019 2.3795 -0.0005 5 7 1.8944 3.5574 -0.0010 6 6 3.2096 3.6822 -0.0016 7 9 3.7607 4.9157 -0.0016 8 6 4.0301 2.5704 0.0044 9 6 3.4485 1.2970 -0.0010 10 6 4.2853 0.0795 -0.0010 11 7 4.0733 -0.8785 0.8951 12 6 4.8232 -1.9646 0.8923 13 6 5.8415 -2.1200 -0.0442 14 7 6.0717 -1.1860 -0.9420 15 6 5.3225 -0.0753 -0.9573 16 6 5.5620 0.9296 -1.9140 17 1 4.8723 1.7546 -2.0148 18 6 6.6956 0.8593 -2.7356 19 7 7.5303 -0.1387 -2.6133 20 14 7.0138 2.1929 -4.0043 21 1 7.8295 3.2728 -3.3935 22 1 7.7452 1.6129 -5.1593 23 1 5.7193 2.7530 -4.4690 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2233 2.3253 -0.0002 28 1 5.1043 2.6821 0.0086 29 1 4.6459 -2.7393 1.6237 30 1 6.4501 -3.0122 -0.0310 31 1 8.3150 -0.1871 -3.1817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239009891.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -17.898247 kcal Electronic energy + Delta-G solvation = -20754.667343 eV Core-core repulsion = 17336.583706 eV Total energy + Delta-G solvation = -3418.083638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.94162 -41.72435 -40.56340 -38.89398 -36.04888 -34.94652 -33.57168 -31.33179 -31.00507 -28.35550 -28.08985 -25.80013 -24.24329 -23.68360 -22.86143 -19.62774 -19.16356 -18.79418 -18.65799 -17.83755 -17.12291 -16.81129 -16.46343 -16.43856 -15.84737 -15.75012 -15.28262 -14.91753 -14.53429 -14.29601 -13.95551 -13.90146 -13.53587 -13.33530 -13.03380 -12.72576 -12.60500 -12.25902 -12.05489 -11.75372 -11.51009 -11.14397 -10.77112 -10.63128 -9.76054 -9.42690 -9.17296 -8.47631 -6.70891 -0.18542 -0.02630 0.66995 1.11995 1.36702 1.48538 1.50890 2.13008 2.27742 2.53825 2.62714 2.71916 3.35799 3.47601 3.75156 3.84262 4.09176 4.22692 4.30219 4.41331 4.44451 4.45747 4.54738 4.73156 4.77121 4.92432 4.99565 5.08889 5.25181 5.49571 5.73751 6.03982 6.31329 6.41457 6.55839 6.64996 7.27769 7.84172 8.20415 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.008937 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.618741 B = 3132.335925 C = 4544.453479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.313 6.313 3 C 0.077 3.923 4 C 0.058 3.942 5 N -0.497 5.497 6 C 0.255 3.745 7 F -0.118 7.118 8 C -0.141 4.141 9 C 0.037 3.963 10 C -0.047 4.047 11 N -0.407 5.407 12 C -0.115 4.115 13 C 0.083 3.917 14 N -0.485 5.485 15 C 0.197 3.803 16 C -0.423 4.423 17 H 0.097 0.903 18 C 0.028 3.972 19 N -0.736 5.736 20 Si 0.977 3.023 21 H -0.256 1.256 22 H -0.261 1.261 23 H -0.257 1.257 24 H 0.115 0.885 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.207 0.793 28 H 0.148 0.852 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 2.108 1.155 8.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C 0.028 3.972 4 C -0.100 4.100 5 N -0.213 5.213 6 C 0.102 3.898 7 F -0.097 7.097 8 C -0.163 4.163 9 C 0.028 3.972 10 C -0.193 4.193 11 N -0.120 5.120 12 C -0.277 4.277 13 C -0.088 4.088 14 N -0.202 5.202 15 C 0.073 3.927 16 C -0.453 4.453 17 H 0.115 0.885 18 C -0.197 4.197 19 N -0.356 5.356 20 Si 0.797 3.203 21 H -0.180 1.180 22 H -0.185 1.185 23 H -0.180 1.180 24 H 0.133 0.867 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.223 0.777 28 H 0.166 0.834 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.427 2.593 1.051 8.879 hybrid contribution 0.908 -0.279 -0.378 1.022 sum -7.519 2.314 0.673 7.896 Atomic orbital electron populations 1.23500 0.76127 1.05886 1.02935 1.86234 1.23538 1.25031 1.87634 1.20264 0.91776 0.86912 0.98265 1.22947 1.01395 0.84002 1.01638 1.66742 1.10219 1.29262 1.15053 1.17684 0.88102 0.79985 1.04037 1.91561 1.84112 1.40034 1.94038 1.21760 1.02032 0.89910 1.02628 1.18007 0.90050 0.91778 0.97414 1.19895 1.02704 0.96043 1.00631 1.67745 1.23464 1.00276 1.20495 1.23159 1.00282 0.98728 1.05545 1.24124 0.95224 0.98196 0.91219 1.69503 1.26739 1.01357 1.22579 1.19560 0.88640 0.92120 0.92375 1.20009 1.06528 1.05864 1.12891 0.88545 1.27023 0.94772 0.98622 0.99302 1.70078 1.07948 1.26677 1.30877 0.85248 0.79932 0.77889 0.77264 1.17983 1.18523 1.18036 0.86686 0.90567 0.90841 0.77655 0.83401 0.81860 0.81912 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.82 113.37 1.11 1.31 16 2 O -0.31 -10.98 9.72 -91.25 -0.89 -11.87 16 3 C 0.08 2.87 6.71 22.92 0.15 3.02 16 4 C 0.06 1.78 10.22 84.77 0.87 2.65 16 5 N -0.50 -17.36 10.35 -196.83 -2.04 -19.39 16 6 C 0.25 9.56 8.39 84.64 0.71 10.27 16 7 F -0.12 -4.25 17.28 44.97 0.78 -3.47 16 8 C -0.14 -5.75 7.77 22.68 0.18 -5.57 16 9 C 0.04 1.62 5.07 -19.77 -0.10 1.52 16 10 C -0.05 -2.36 6.10 42.41 0.26 -2.10 16 11 N -0.41 -19.62 10.02 -182.33 -1.83 -21.45 16 12 C -0.11 -5.03 11.22 84.90 0.95 -4.08 16 13 C 0.08 3.80 11.22 84.96 0.95 4.75 16 14 N -0.48 -25.78 8.10 -187.83 -1.52 -27.30 16 15 C 0.20 10.52 6.53 40.35 0.26 10.78 16 16 C -0.42 -21.52 7.88 23.37 0.18 -21.33 16 17 H 0.10 4.68 5.72 -2.91 -0.02 4.67 16 18 C 0.03 1.33 5.49 85.34 0.47 1.80 16 19 N -0.74 -36.84 11.53 21.86 0.25 -36.59 16 20 Si 0.98 35.86 29.56 68.60 2.03 37.89 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 22 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 23 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 1.24 7.68 -2.39 -0.02 1.22 16 26 H 0.07 1.23 7.68 -2.39 -0.02 1.21 16 27 H 0.21 4.30 6.32 -2.91 -0.02 4.28 16 28 H 0.15 6.13 7.49 -2.91 -0.02 6.11 16 29 H 0.16 5.85 8.06 -2.91 -0.02 5.83 16 30 H 0.16 6.12 8.06 -2.91 -0.02 6.09 16 31 H 0.29 12.93 8.29 -92.70 -0.77 12.16 16 Total: -1.00 -64.91 281.73 3.98 -60.93 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.19 Total: 18.25 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.00 Total: 3.01 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -5.13 Total: -104.74 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.89 Total: -11.87 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -64.91 3.98 -60.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239009891.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.031 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds