Wall clock time and date at job start Mon Mar 30 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35734 * 116.99841 * 2 1 4 4 C 1.38692 * 119.59423 * 179.97438 * 3 2 1 5 5 C 1.39558 * 118.99562 * 180.02562 * 4 3 2 6 6 C 1.48320 * 120.89233 * 179.97438 * 5 4 3 7 7 C 1.39998 * 119.98193 * 359.97438 * 6 5 4 8 8 N 1.32195 * 120.29700 * 180.02562 * 7 6 5 9 9 C 1.31867 * 120.27638 * 359.74931 * 8 7 6 10 10 C 1.40835 * 119.96282 * 0.52663 * 9 8 7 11 11 C 1.41342 * 120.15058 * 179.72343 * 10 9 8 12 12 H 1.08001 * 119.99640 * 20.44892 * 11 10 9 13 13 C 1.40055 * 120.00333 * 200.44363 * 11 10 9 14 14 N 1.30723 * 119.99673 * 21.76099 * 13 11 10 15 15 Si 1.86796 * 119.99909 * 201.75859 * 13 11 10 16 16 H 1.48501 * 109.47048 * 270.00032 * 15 13 11 17 17 H 1.48498 * 109.47490 * 30.00093 * 15 13 11 18 18 H 1.48498 * 109.47218 * 150.00012 * 15 13 11 19 19 N 1.32514 * 119.98286 * 180.02562 * 6 5 4 20 20 C 1.40098 * 118.21536 * 0.25668 * 5 4 3 21 21 F 1.35103 * 120.45474 * 179.74243 * 20 5 4 22 22 C 1.38113 * 119.09197 * 359.49945 * 20 5 4 23 23 N 1.31986 * 120.91982 * 0.51186 * 22 20 5 24 24 H 1.09006 * 109.46778 * 59.99836 * 1 2 3 25 25 H 1.08998 * 109.46710 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46925 * 299.99883 * 1 2 3 27 27 H 1.08001 * 120.50524 * 0.02562 * 4 3 2 28 28 H 1.08009 * 119.85385 * 0.02562 * 7 6 5 29 29 H 1.08005 * 120.01806 * 180.28569 * 9 8 7 30 30 H 0.96995 * 120.00585 * 5.83935 * 14 13 11 31 31 H 1.08000 * 119.54201 * 180.24575 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4307 1.2722 0.0005 5 6 4.0513 2.5223 0.0011 6 6 5.5299 2.6385 0.0022 7 6 6.3223 1.4843 0.0033 8 7 7.6408 1.5806 0.0049 9 6 8.2209 2.7648 0.0004 10 6 7.4347 3.9333 0.0052 11 6 8.0523 5.2046 0.0063 12 1 9.0757 5.3080 -0.3231 13 6 7.3373 6.3302 0.4344 14 7 6.2961 6.1864 1.2116 15 14 7.8717 8.0369 -0.1051 16 1 8.8400 8.5861 0.8777 17 1 8.5149 7.9551 -1.4410 18 1 6.6849 8.9263 -0.1808 19 7 6.1002 3.8346 0.0032 20 6 3.2400 3.6645 0.0066 21 9 3.7930 4.8971 0.0126 22 6 1.8672 3.5131 0.0007 23 7 1.3172 2.3133 0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0206 0.3675 0.0005 28 1 5.8544 0.5109 0.0029 29 1 9.2984 2.8386 -0.0030 30 1 6.0685 5.3105 1.5605 31 1 1.2349 4.3887 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241661575.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:25 Heat of formation + Delta-G solvation = -9.671814 kcal Electronic energy + Delta-G solvation = -20476.465740 eV Core-core repulsion = 17058.738827 eV Total energy + Delta-G solvation = -3417.726913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.09157 -40.43606 -39.24369 -37.60312 -34.48217 -33.55183 -31.76454 -30.19307 -29.51645 -27.23316 -25.96677 -24.35180 -23.36335 -21.92192 -21.32682 -18.62004 -17.71662 -17.39601 -16.94327 -16.04152 -15.78119 -15.52248 -14.96120 -14.83072 -14.51457 -14.16880 -13.84028 -13.47187 -13.29072 -12.92300 -12.79847 -12.23808 -12.09648 -11.90976 -11.46636 -11.25703 -11.04150 -10.48946 -10.38388 -10.20937 -10.07736 -9.70297 -9.60676 -8.99279 -8.21735 -7.91616 -7.82730 -7.17021 -4.85914 0.86121 1.22085 2.44556 2.71479 3.08030 3.09339 3.18711 3.29733 3.82668 3.91676 4.30583 4.45235 4.52005 4.75844 5.03646 5.19131 5.26801 5.27310 5.39688 5.52941 5.56706 5.73600 5.86097 5.94103 6.16762 6.35883 6.53972 6.72886 6.81855 7.26162 7.29549 7.52333 7.68280 7.82034 8.23471 8.40235 8.91173 9.36856 9.93786 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.005748 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.332457 B = 4870.082880 C = 5912.759410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.298 3.702 4 C -0.148 4.148 5 C 0.019 3.981 6 C 0.138 3.862 7 C -0.103 4.103 8 N -0.422 5.422 9 C -0.046 4.046 10 C 0.193 3.807 11 C -0.460 4.460 12 H 0.091 0.909 13 C 0.033 3.967 14 N -0.734 5.734 15 Si 1.073 2.927 16 H -0.275 1.275 17 H -0.274 1.274 18 H -0.271 1.271 19 N -0.494 5.494 20 C 0.051 3.949 21 F -0.092 7.092 22 C 0.097 3.903 23 N -0.519 5.519 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.308 0.692 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -3.908 -1.279 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.120 3.880 4 C -0.170 4.170 5 C 0.010 3.990 6 C -0.008 4.008 7 C -0.261 4.261 8 N -0.133 5.133 9 C -0.218 4.218 10 C 0.068 3.932 11 C -0.491 4.491 12 H 0.109 0.891 13 C -0.196 4.196 14 N -0.354 5.354 15 Si 0.895 3.105 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.196 1.196 19 N -0.213 5.213 20 C 0.028 3.972 21 F -0.070 7.070 22 C -0.059 4.059 23 N -0.243 5.243 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.170 0.830 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.123 0.877 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.656 -2.643 -1.141 10.076 hybrid contribution 1.068 -1.369 -0.095 1.739 sum -8.588 -4.012 -1.236 9.559 Atomic orbital electron populations 1.22820 0.77537 1.02660 1.02377 1.86236 1.22601 1.24178 1.88445 1.19518 0.88950 0.84623 0.94918 1.20977 0.91632 0.98365 1.06009 1.19029 0.92795 0.91287 0.95933 1.20047 0.90609 0.92215 0.97961 1.22407 0.90043 0.96934 1.16733 1.67714 1.10968 1.27802 1.06823 1.23309 0.99746 0.88540 1.10187 1.19369 0.87805 0.94625 0.91419 1.20656 1.01012 0.91370 1.36088 0.89059 1.27134 0.93035 1.05814 0.93657 1.70185 1.17869 1.31672 1.15699 0.83527 0.77044 0.72765 0.77135 1.20106 1.19912 1.19559 1.69094 1.11432 1.22463 1.18319 1.18741 0.91756 0.81924 1.04758 1.91714 1.85381 1.37079 1.92861 1.22357 0.90978 0.94645 0.97962 1.67177 1.40182 0.98108 1.18787 0.92419 0.88829 0.92401 0.82983 0.84824 0.84318 0.87703 0.81362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.32 10.48 -18.91 -0.20 -4.52 16 3 C 0.30 4.78 7.48 -17.21 -0.13 4.65 16 4 C -0.15 -2.52 9.43 -38.92 -0.37 -2.89 16 5 C 0.02 0.39 5.91 -104.56 -0.62 -0.23 16 6 C 0.14 3.24 6.74 -82.77 -0.56 2.68 16 7 C -0.10 -2.34 10.64 -16.74 -0.18 -2.51 16 8 N -0.42 -10.16 10.47 -12.06 -0.13 -10.29 16 9 C -0.05 -1.12 10.98 -16.56 -0.18 -1.30 16 10 C 0.19 5.03 6.09 -84.84 -0.52 4.52 16 11 C -0.46 -11.60 9.08 -37.72 -0.34 -11.95 16 12 H 0.09 2.12 7.94 -52.49 -0.42 1.70 16 13 C 0.03 0.81 5.29 -17.34 -0.09 0.72 16 14 N -0.73 -19.24 13.11 55.55 0.73 -18.51 16 15 Si 1.07 20.63 29.99 -169.99 -5.10 15.53 16 16 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 17 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 N -0.49 -12.87 6.16 -7.51 -0.05 -12.91 16 20 C 0.05 1.01 7.32 -38.93 -0.28 0.72 16 21 F -0.09 -2.09 15.50 2.25 0.03 -2.05 16 22 C 0.10 1.56 11.16 -17.53 -0.20 1.36 16 23 N -0.52 -8.23 9.19 -13.35 -0.12 -8.36 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.15 2.32 6.32 -52.49 -0.33 1.99 16 28 H 0.13 2.58 6.28 -52.48 -0.33 2.25 16 29 H 0.14 3.05 8.06 -52.48 -0.42 2.63 16 30 H 0.31 8.49 6.62 -40.82 -0.27 8.22 16 31 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 284.31 15.07 4.28 4.28 Total: -1.00 -29.27 284.31 -5.21 -34.48 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -2.25 Total: 5.09 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.41 Total: -2.75 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.43 Total: -50.07 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.52 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.03 Total: -2.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.10 Total: 15.53 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.27 -5.21 -34.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241661575.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.810 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds