Wall clock time and date at job start Mon Mar 30 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35966 * 116.99688 * 2 1 4 4 C 1.38603 * 120.40625 * 0.28044 * 3 2 1 5 5 C 1.40135 * 118.26930 * 180.21247 * 4 3 2 6 6 C 1.47743 * 120.51232 * 179.77907 * 5 4 3 7 7 N 1.32879 * 120.24816 * 43.80003 * 6 5 4 8 8 C 1.32008 * 120.07731 * 179.97438 * 7 6 5 9 9 C 1.39199 * 120.58693 * 359.97438 * 8 7 6 10 10 N 1.31601 * 120.51424 * 0.02562 * 9 8 7 11 11 C 1.33972 * 119.90119 * 0.02562 * 10 9 8 12 12 C 1.40779 * 120.28974 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99704 * 190.14198 * 12 11 10 14 14 C 1.40155 * 119.99716 * 10.14709 * 12 11 10 15 15 N 1.30694 * 120.00480 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99754 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47066 * 89.99654 * 16 14 12 18 18 H 1.48497 * 109.46836 * 209.99850 * 16 14 12 19 19 H 1.48499 * 109.46991 * 329.99742 * 16 14 12 20 20 C 1.39665 * 118.97372 * 359.51128 * 5 4 3 21 21 N 1.31696 * 120.68743 * 0.24850 * 20 5 4 22 22 C 1.32084 * 121.90482 * 359.97438 * 21 20 5 23 23 F 1.35103 * 119.51352 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47557 * 299.99982 * 1 2 3 26 26 H 1.09004 * 109.46954 * 60.00179 * 1 2 3 27 27 H 1.07993 * 120.86241 * 359.97438 * 4 3 2 28 28 H 1.07991 * 119.70781 * 179.97438 * 8 7 6 29 29 H 1.08008 * 119.74299 * 179.74193 * 9 8 7 30 30 H 0.96996 * 120.00013 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.65912 * 180.22712 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2995 2.3792 0.0059 5 6 1.9817 3.6033 0.0010 6 6 1.2351 4.8782 0.0020 7 7 0.1852 5.0384 0.8005 8 6 -0.4792 6.1791 0.7990 9 6 -0.0905 7.2241 -0.0344 10 7 0.9458 7.0906 -0.8345 11 6 1.6339 5.9411 -0.8500 12 6 2.7440 5.7896 -1.7024 13 1 3.1945 4.8170 -1.8345 14 6 3.2646 6.9010 -2.3793 15 7 2.7191 8.0779 -2.2197 16 14 4.7381 6.7000 -3.5098 17 1 4.2688 6.3941 -4.8851 18 1 5.5262 7.9585 -3.5241 19 1 5.5906 5.5876 -3.0188 20 6 3.3783 3.5994 0.0010 21 7 4.0473 2.4650 0.0005 22 6 3.4361 1.2941 0.0005 23 9 4.1703 0.1600 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2200 2.3465 0.0101 28 1 -1.3318 6.3027 1.4501 29 1 -0.6464 8.1501 -0.0276 30 1 3.0792 8.8469 -2.6885 31 1 3.9154 4.5364 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245073051.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:38 Heat of formation + Delta-G solvation = -18.593963 kcal Electronic energy + Delta-G solvation = -20481.319559 eV Core-core repulsion = 17063.205753 eV Total energy + Delta-G solvation = -3418.113806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.94252 -41.69642 -40.66245 -39.19785 -36.07406 -34.71472 -33.40225 -32.33912 -30.55713 -28.41614 -28.13766 -25.52541 -24.37003 -23.75332 -22.86179 -19.70744 -19.37913 -18.77882 -18.64822 -17.74172 -17.43266 -16.89066 -16.71878 -16.23970 -15.94214 -15.83120 -15.17585 -14.96992 -14.62093 -14.22218 -14.05390 -13.96089 -13.52018 -13.31534 -13.03433 -12.62427 -12.51239 -12.32829 -12.02591 -11.77070 -11.56375 -11.22573 -10.94374 -10.73575 -9.79510 -9.47315 -9.19187 -8.49958 -6.70996 -0.35178 0.06517 0.65582 1.08626 1.39773 1.49128 1.54207 1.96225 2.14607 2.51165 2.63739 2.71173 3.34011 3.45915 3.67696 3.91609 3.95068 4.15523 4.30027 4.34373 4.45094 4.46899 4.66018 4.69232 4.72557 4.94709 5.00657 5.11677 5.21856 5.34206 5.71348 6.03528 6.07691 6.37552 6.58026 6.64015 7.22284 7.82193 8.18976 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.007205 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.806459 B = 3885.483307 C = 5268.536513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.070 3.930 4 C -0.128 4.128 5 C 0.001 3.999 6 C -0.054 4.054 7 N -0.417 5.417 8 C -0.109 4.109 9 C 0.086 3.914 10 N -0.483 5.483 11 C 0.198 3.802 12 C -0.421 4.421 13 H 0.102 0.898 14 C 0.031 3.969 15 N -0.733 5.733 16 Si 0.974 3.026 17 H -0.262 1.262 18 H -0.261 1.261 19 H -0.253 1.253 20 C 0.105 3.895 21 N -0.486 5.486 22 C 0.239 3.761 23 F -0.115 7.115 24 H 0.134 0.866 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.290 0.710 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -7.039 0.922 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.228 6.228 3 C 0.020 3.980 4 C -0.155 4.155 5 C -0.003 4.003 6 C -0.199 4.199 7 N -0.130 5.130 8 C -0.272 4.272 9 C -0.086 4.086 10 N -0.200 5.200 11 C 0.074 3.926 12 C -0.451 4.451 13 H 0.120 0.880 14 C -0.194 4.194 15 N -0.353 5.353 16 Si 0.794 3.206 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.176 1.176 20 C -0.054 4.054 21 N -0.200 5.200 22 C 0.084 3.916 23 F -0.094 7.094 24 H 0.152 0.848 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.182 0.818 30 H 0.101 0.899 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.059 -7.049 0.839 7.392 hybrid contribution -0.567 0.273 -0.365 0.727 sum -2.626 -6.776 0.474 7.283 Atomic orbital electron populations 1.23485 0.75593 1.06363 1.02450 1.86114 1.24082 1.24138 1.88511 1.19463 0.90847 0.86672 1.00986 1.21781 1.01518 0.89464 1.02740 1.19214 0.93262 0.91892 0.95959 1.19950 1.00311 0.95672 1.03969 1.67723 1.04052 1.23932 1.17301 1.23193 1.05045 0.91598 1.07375 1.24151 0.93484 0.99384 0.91551 1.69504 1.06449 1.22703 1.21296 1.19530 0.93292 0.87724 0.92086 1.20136 1.08794 0.96838 1.19329 0.87991 1.26964 1.00832 0.94075 0.97572 1.70059 1.34533 1.00560 1.30166 0.85279 0.77191 0.79849 0.78290 1.18637 1.18505 1.17614 1.22729 0.90907 0.94404 0.97358 1.67013 1.41064 0.97342 1.14608 1.17597 0.84046 0.82566 1.07365 1.91558 1.77767 1.46014 1.94097 0.84756 0.91628 0.91889 0.82206 0.81505 0.81816 0.89870 0.80869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.83 113.37 1.11 1.41 16 2 O -0.32 -9.27 10.37 -93.16 -0.97 -10.24 16 3 C 0.07 2.40 6.71 22.60 0.15 2.55 16 4 C -0.13 -4.59 8.79 22.82 0.20 -4.39 16 5 C 0.00 0.02 5.29 -19.96 -0.11 -0.08 16 6 C -0.05 -2.51 6.44 42.42 0.27 -2.24 16 7 N -0.42 -18.44 10.32 -182.32 -1.88 -20.32 16 8 C -0.11 -4.39 11.22 84.90 0.95 -3.43 16 9 C 0.09 3.65 11.22 84.96 0.95 4.60 16 10 N -0.48 -24.28 8.12 -187.84 -1.52 -25.80 16 11 C 0.20 9.93 6.51 40.36 0.26 10.20 16 12 C -0.42 -20.39 7.46 23.36 0.17 -20.22 16 13 H 0.10 4.71 5.37 -2.91 -0.02 4.70 16 14 C 0.03 1.43 5.49 85.33 0.47 1.90 16 15 N -0.73 -35.35 11.54 21.86 0.25 -35.10 16 16 Si 0.97 34.88 29.56 68.60 2.03 36.91 16 17 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 18 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 19 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 20 C 0.10 4.29 8.73 85.06 0.74 5.03 16 21 N -0.49 -19.53 10.35 -195.26 -2.02 -21.55 16 22 C 0.24 9.01 8.43 84.90 0.72 9.73 16 23 F -0.12 -4.19 17.13 44.97 0.77 -3.42 16 24 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 26 H 0.06 1.20 7.70 -2.38 -0.02 1.18 16 27 H 0.16 5.16 6.43 -2.91 -0.02 5.14 16 28 H 0.17 5.36 8.06 -2.92 -0.02 5.34 16 29 H 0.16 5.69 8.06 -2.91 -0.02 5.67 16 30 H 0.29 12.52 8.29 -92.71 -0.77 11.75 16 31 H 0.17 7.19 6.72 -2.91 -0.02 7.17 16 Total: -1.00 -59.23 281.27 3.76 -55.47 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.19 Total: 19.00 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.90 Total: 5.05 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -5.17 Total: -102.77 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.97 Total: -10.24 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.77 Total: -3.42 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Total: -59.23 3.76 -55.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245073051.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.879 kcal (2) G-P(sol) polarization free energy of solvation -59.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds