Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99870 * 2 1 4 4 C 1.50708 * 109.46998 * 270.00216 * 3 2 1 5 5 H 1.07999 * 119.99893 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99892 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00036 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99918 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46831 * 59.99998 * 8 6 4 10 10 H 1.48501 * 109.47051 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46834 * 300.00355 * 8 6 4 12 12 C 1.34775 * 120.00266 * 180.02562 * 2 1 3 13 13 S 1.71189 * 120.00162 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99741 * 359.97438 * 12 2 1 15 15 C 1.39477 * 120.00087 * 184.11942 * 14 12 2 16 16 C 1.39126 * 119.92535 * 134.56328 * 15 14 12 17 17 C 1.37677 * 120.08132 * 180.02562 * 16 15 14 18 18 C 1.39793 * 119.92065 * 359.97438 * 17 16 15 19 19 C 1.43195 * 120.07851 * 179.97438 * 18 17 16 20 20 N 8.83081 * 112.33929 * 177.04167 * 2 1 3 21 21 C 1.39782 * 119.84077 * 0.24595 * 18 17 16 22 22 C 1.37688 * 119.92070 * 359.52255 * 21 18 17 23 23 H 1.08998 * 109.47237 * 269.99903 * 1 2 3 24 24 H 1.09001 * 109.47078 * 29.99951 * 1 2 3 25 25 H 1.09001 * 109.47134 * 150.00342 * 1 2 3 26 26 H 1.09000 * 109.46999 * 29.99385 * 3 2 1 27 27 H 1.08997 * 109.47326 * 149.99827 * 3 2 1 28 28 H 0.96999 * 119.99824 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00166 * 4.11866 * 14 12 2 30 30 H 1.07994 * 119.95857 * 0.02853 * 16 15 14 31 31 H 1.07998 * 120.04345 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.04082 * 179.74503 * 21 18 17 33 33 H 1.07997 * 119.96031 * 180.20575 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2418 6 6 3.1268 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4387 3.4164 -3.4341 9 1 2.1413 3.5942 -4.1343 10 1 4.1811 4.7025 -3.4341 11 1 4.2410 2.3810 -4.1337 12 6 2.1390 -1.1672 -0.0005 13 16 3.8509 -1.1671 -0.0012 14 7 1.4651 -2.3343 -0.0005 15 6 2.1598 -3.5407 0.0857 16 6 1.7206 -4.5339 0.9553 17 6 2.4042 -5.7258 1.0434 18 6 3.5406 -5.9375 0.2573 19 6 4.2545 -7.1756 0.3466 20 7 4.8216 -8.1572 0.4216 21 6 3.9817 -4.9356 -0.6119 22 6 3.2903 -3.7480 -0.6983 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.0310 4.4435 -0.8505 29 1 0.4970 -2.3354 -0.0605 30 1 0.8423 -4.3698 1.5619 31 1 2.0629 -6.4962 1.7189 32 1 4.8616 -5.0942 -1.2177 33 1 3.6286 -2.9748 -1.3721 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245881629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = 70.442860 kcal Electronic energy + Delta-G solvation = -17763.984592 eV Core-core repulsion = 14915.944888 eV Total energy + Delta-G solvation = -2848.039704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28023 -39.69059 -37.73028 -36.35716 -34.64166 -32.08509 -31.29096 -29.86798 -28.51996 -25.74107 -24.15444 -23.92341 -22.35326 -19.88137 -19.51649 -18.92398 -18.64793 -17.06413 -16.60139 -16.37811 -15.72061 -15.51165 -15.32749 -15.02279 -14.61023 -14.42412 -14.24263 -14.01834 -13.73493 -13.52338 -13.30854 -13.06107 -12.88704 -12.82156 -12.58901 -12.18428 -12.11161 -12.01636 -11.72238 -10.59405 -10.48482 -9.99214 -9.32096 -8.73478 -8.18227 -8.00659 -6.29408 -0.36836 0.51994 0.56194 1.04355 1.40424 1.45738 1.50938 1.64877 1.66540 2.00506 2.36408 2.47219 2.91503 2.97310 3.15551 3.95565 4.03140 4.03976 4.29014 4.41492 4.47587 4.62172 4.68773 4.85722 5.00045 5.14771 5.23496 5.31523 5.37350 5.45423 5.62694 5.78068 5.81333 6.00571 6.06097 6.44308 6.48447 6.75330 7.37423 8.89161 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.004276 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.276291 B = 6546.779873 C = 7101.127769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.537 5.537 3 C 0.252 3.748 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.261 1.261 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.571 3.429 13 S -0.727 6.727 14 N -0.624 5.624 15 C 0.154 3.846 16 C -0.114 4.114 17 C -0.052 4.052 18 C -0.040 4.040 19 C 0.285 3.715 20 N -0.469 5.469 21 C -0.067 4.067 22 C -0.090 4.090 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.266 0.734 29 H 0.426 0.574 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.137 0.863 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.847 -14.319 2.421 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.239 5.239 3 C 0.131 3.869 4 C -0.566 4.566 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.209 3.791 13 S -0.594 6.594 14 N -0.255 5.255 15 C 0.059 3.941 16 C -0.134 4.134 17 C -0.074 4.074 18 C -0.044 4.044 19 C -0.029 4.029 20 N -0.145 5.145 21 C -0.089 4.089 22 C -0.113 4.113 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.270 0.730 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.155 0.845 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.895 -15.437 2.605 19.073 hybrid contribution -0.625 1.272 -1.008 1.739 sum -11.520 -14.164 1.597 18.327 Atomic orbital electron populations 1.22439 0.76595 1.05608 1.04659 1.47623 1.08627 1.05071 1.62593 1.19454 0.92894 0.77002 0.97556 1.21319 1.37043 1.06132 0.92067 0.92928 1.25620 0.94928 0.96588 1.01085 1.70014 1.38767 1.14776 1.32720 0.85595 0.78699 0.77182 0.80093 1.18550 1.20859 1.20752 1.21675 0.93842 0.82498 0.81103 1.93416 0.94595 1.93737 1.77702 1.42000 1.10365 1.01427 1.71732 1.17871 0.95016 0.84567 0.96684 1.21091 1.02814 0.92445 0.97084 1.21148 0.91843 0.97502 0.96900 1.16102 0.97392 0.87950 1.02961 1.25845 0.92361 0.92501 0.92203 1.81260 1.10327 1.12853 1.10047 1.20981 0.99492 0.91018 0.97444 1.21393 0.94805 0.95973 0.99133 0.88636 0.89112 0.88280 0.94518 0.94152 0.92537 0.73022 0.81293 0.81566 0.84502 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 10.24 127.77 1.31 2.37 16 2 N -0.54 -18.78 2.86 -739.19 -2.11 -20.89 16 3 C 0.25 11.98 4.92 85.64 0.42 12.40 16 4 C -0.53 -27.70 9.39 25.60 0.24 -27.46 16 5 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 6 C 0.02 0.96 5.46 84.65 0.46 1.42 16 7 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16 8 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.57 19.95 7.55 179.06 1.35 21.30 16 13 S -0.73 -33.94 24.22 -56.49 -1.37 -35.31 16 14 N -0.62 -14.27 5.17 -189.94 -0.98 -15.25 16 15 C 0.15 3.41 5.93 38.35 0.23 3.64 16 16 C -0.11 -1.62 9.95 22.35 0.22 -1.40 16 17 C -0.05 -0.72 9.75 22.51 0.22 -0.50 16 18 C -0.04 -0.76 5.74 -21.29 -0.12 -0.88 16 19 C 0.29 6.31 15.33 88.33 1.35 7.67 16 20 N -0.47 -12.58 18.54 19.00 0.35 -12.22 16 21 C -0.07 -1.51 9.75 22.51 0.22 -1.29 16 22 C -0.09 -2.42 7.84 22.35 0.18 -2.24 16 23 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.10 1.29 6.31 -2.39 -0.02 1.27 16 26 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 27 H 0.04 2.27 6.58 -2.39 -0.02 2.26 16 28 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.43 5.88 6.52 -92.71 -0.60 5.28 16 30 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.13 4.37 6.09 -8.21 -0.05 4.32 16 Total: -1.00 -75.33 306.84 4.80 -70.53 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.51 Total: 5.78 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.08 Total: 15.03 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -2.46 Total: -101.45 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -33.94 SS G_CDS: -1.37 Total: -35.31 kcal Total: -75.33 4.80 -70.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245881629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.975 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds