Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99710 * 2 1 4 4 H 1.48506 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47105 * 300.00040 * 3 2 1 6 6 H 1.48495 * 109.47443 * 60.00076 * 3 2 1 7 7 C 1.37870 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53487 * 114.21172 * 180.02562 * 9 7 2 11 11 N 1.47061 * 87.98986 * 139.65182 * 10 9 7 12 12 S 1.65602 * 136.06111 * 152.84208 * 11 10 9 13 13 O 1.42100 * 104.27428 * 333.93122 * 12 11 10 14 14 O 1.42095 * 104.27795 * 206.07434 * 12 11 10 15 15 C 1.81404 * 104.44823 * 90.00102 * 12 11 10 16 16 C 1.53173 * 109.54139 * 185.00327 * 15 12 11 17 17 C 1.53096 * 109.16177 * 176.84981 * 16 15 12 18 18 O 1.42908 * 109.41214 * 302.38665 * 17 16 15 19 19 C 1.42899 * 114.09482 * 61.16277 * 18 17 16 20 20 C 1.53100 * 109.41499 * 298.83529 * 19 18 17 21 21 C 1.47065 * 87.88289 * 333.10292 * 11 10 9 22 22 H 0.97008 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.09004 * 113.28046 * 46.92542 * 9 7 2 24 24 H 1.09000 * 113.46740 * 24.86780 * 10 9 7 25 25 H 1.09001 * 113.46712 * 254.43665 * 10 9 7 26 26 H 1.09000 * 109.61554 * 64.77877 * 15 12 11 27 27 H 1.08998 * 109.52657 * 56.94027 * 16 15 12 28 28 H 1.09003 * 109.57546 * 296.78077 * 16 15 12 29 29 H 1.08993 * 109.48033 * 62.37417 * 17 16 15 30 30 H 1.09001 * 109.48095 * 182.40698 * 17 16 15 31 31 H 1.08996 * 109.47929 * 178.85800 * 19 18 17 32 32 H 1.09003 * 109.48309 * 58.82109 * 19 18 17 33 33 H 1.08988 * 109.52177 * 297.70819 * 20 19 18 34 34 H 1.09001 * 109.52270 * 177.51285 * 20 19 18 35 35 H 1.08999 * 113.47084 * 141.67851 * 21 11 10 36 36 H 1.09001 * 113.46770 * 272.11503 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.1488 -3.7441 -0.0016 11 7 1.2093 -4.3578 0.9490 12 16 0.7478 -5.8986 1.3430 13 8 0.9934 -6.6506 0.1625 14 8 -0.5689 -5.7497 1.8561 15 6 1.8928 -6.3910 2.6610 16 6 1.6480 -7.8570 3.0312 17 6 2.6698 -8.2860 4.0875 18 8 3.9905 -8.0851 3.5799 19 6 4.2924 -6.7252 3.2611 20 6 3.3357 -6.2335 2.1715 21 6 0.8551 -3.0006 1.3911 22 1 -0.4851 0.8401 -0.0004 23 1 0.4438 -2.5299 -0.7334 24 1 3.1381 -3.5659 0.4197 25 1 2.1858 -4.2527 -0.9650 26 1 1.7343 -5.7623 3.5372 27 1 1.7580 -8.4802 2.1437 28 1 0.6407 -7.9691 3.4323 29 1 2.5324 -7.6897 4.9894 30 1 2.5277 -9.3406 4.3236 31 1 5.3190 -6.6554 2.9018 32 1 4.1762 -6.1084 4.1523 33 1 3.4799 -6.8238 1.2668 34 1 3.5354 -5.1834 1.9583 35 1 -0.2057 -2.8782 1.6096 36 1 1.4963 -2.6223 2.1872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259907068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -89.020647 kcal Electronic energy + Delta-G solvation = -20173.441132 eV Core-core repulsion = 16978.884901 eV Total energy + Delta-G solvation = -3194.556231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.40255 -38.29946 -36.74285 -35.60347 -34.03146 -32.65292 -31.40100 -28.37154 -25.64868 -25.01519 -24.60547 -23.77816 -20.81407 -19.85695 -18.31535 -17.14989 -17.04718 -16.41161 -16.22704 -15.89859 -15.35056 -14.94459 -14.65628 -14.33957 -14.08654 -13.79407 -13.07603 -12.83531 -12.65151 -12.13053 -11.81299 -11.76409 -11.74469 -11.60290 -11.52605 -11.35676 -11.19451 -11.10641 -11.00982 -10.57943 -10.42659 -10.30505 -9.65815 -9.24667 -9.07702 -8.60568 -8.20883 -6.16491 -4.22455 0.53079 3.00680 3.22745 3.32001 3.34327 3.65050 4.05369 4.11046 4.31438 4.34323 4.60984 4.71285 4.84780 4.96403 5.14135 5.19735 5.21521 5.33363 5.41556 5.45392 5.64758 5.73230 5.77672 5.89298 6.16087 6.20752 6.33276 6.43521 6.69521 6.88365 6.94123 7.49061 7.61350 7.81732 8.20190 8.81672 9.43773 10.93003 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.005036 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.518217 B = 5558.810340 C = 6114.445301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.121 3.879 11 N -1.037 6.037 12 S 2.627 3.373 13 O -0.958 6.958 14 O -0.959 6.959 15 C -0.607 4.607 16 C -0.144 4.144 17 C 0.071 3.929 18 O -0.382 6.382 19 C 0.069 3.931 20 C -0.138 4.138 21 C 0.125 3.875 22 H 0.264 0.736 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.132 0.868 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -11.813 7.520 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.017 3.983 10 C -0.004 4.004 11 N -0.878 5.878 12 S 2.722 3.278 13 O -0.949 6.949 14 O -0.950 6.950 15 C -0.713 4.713 16 C -0.183 4.183 17 C -0.007 4.007 18 O -0.300 6.300 19 C -0.009 4.009 20 C -0.176 4.176 21 C 0.000 4.000 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.151 0.849 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.411 -12.599 7.191 15.483 hybrid contribution 0.633 1.238 0.752 1.581 sum 6.043 -11.360 7.943 15.122 Atomic orbital electron populations 1.69973 1.06080 1.27023 1.48959 1.25048 0.94839 0.99384 0.94357 0.86501 0.80106 0.83462 0.77693 1.19614 1.20899 1.20980 1.20992 0.92989 0.89613 1.51954 0.91784 1.20342 0.94761 0.90781 0.92463 1.22891 0.93177 0.94067 0.90284 1.60148 1.56466 1.19446 1.51697 1.04660 0.75136 0.72648 0.75370 1.93535 1.86613 1.70985 1.43756 1.93554 1.33937 1.85274 1.82193 1.30801 1.13757 1.05763 1.21003 1.22003 1.01412 0.92693 1.02215 1.22455 0.81993 1.01691 0.94542 1.87925 1.30759 1.26881 1.84484 1.22516 0.98816 0.82907 0.96633 1.21957 0.91248 1.03990 1.00400 1.23066 0.99795 0.75367 1.01743 0.92649 0.91265 0.91199 0.92041 0.84945 0.89487 0.89536 0.92791 0.88317 0.88206 0.92836 0.89446 0.88854 0.91873 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.18 13.26 55.43 0.74 -23.44 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -12.81 8.82 -34.44 -0.30 -13.11 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.04 0.88 3.77 -91.40 -0.34 0.54 16 10 C 0.12 2.28 7.92 -8.53 -0.07 2.22 16 11 N -1.04 -19.43 3.67 -125.38 -0.46 -19.89 16 12 S 2.63 45.43 5.41 -107.50 -0.58 44.85 16 13 O -0.96 -18.76 18.06 -57.54 -1.04 -19.80 16 14 O -0.96 -19.50 18.07 -57.54 -1.04 -20.54 16 15 C -0.61 -7.73 2.96 -26.55 -0.08 -7.81 16 16 C -0.14 -1.62 5.43 -26.59 -0.14 -1.76 16 17 C 0.07 0.70 6.84 37.21 0.25 0.96 16 18 O -0.38 -4.52 10.77 -35.23 -0.38 -4.90 16 19 C 0.07 0.72 6.84 37.21 0.25 0.98 16 20 C -0.14 -1.64 5.27 -26.59 -0.14 -1.78 16 21 C 0.13 2.62 8.25 -8.66 -0.07 2.55 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 24 H 0.07 1.17 7.66 -51.93 -0.40 0.77 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.09 8.14 -51.94 -0.42 0.67 16 34 H 0.09 1.08 7.09 -51.93 -0.37 0.71 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -31.11 310.14 -9.23 -40.34 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.38 Total: -0.46 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.74 Total: -15.59 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.28 Total: -43.33 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.46 Total: -45.24 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 45.43 SS G_CDS: -0.58 Total: 44.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.11 -9.23 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259907068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.677 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds