Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99710 * 2 1 4 4 H 1.48506 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47105 * 300.00040 * 3 2 1 6 6 H 1.48495 * 109.47443 * 60.00076 * 3 2 1 7 7 C 1.37870 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53487 * 114.21172 * 180.02562 * 9 7 2 11 11 N 1.47061 * 87.98986 * 139.65182 * 10 9 7 12 12 S 1.65602 * 136.06111 * 152.84208 * 11 10 9 13 13 O 1.42100 * 104.27428 * 333.93122 * 12 11 10 14 14 O 1.42095 * 104.27795 * 206.07434 * 12 11 10 15 15 C 1.81404 * 104.44823 * 90.00102 * 12 11 10 16 16 C 1.53173 * 109.54139 * 185.00327 * 15 12 11 17 17 C 1.53096 * 109.16177 * 176.84981 * 16 15 12 18 18 O 1.42908 * 109.41214 * 302.38665 * 17 16 15 19 19 C 1.42899 * 114.09482 * 61.16277 * 18 17 16 20 20 C 1.53100 * 109.41499 * 298.83529 * 19 18 17 21 21 C 1.47065 * 87.88289 * 333.10292 * 11 10 9 22 22 H 0.97008 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.09004 * 113.28046 * 46.92542 * 9 7 2 24 24 H 1.09000 * 113.46740 * 24.86780 * 10 9 7 25 25 H 1.09001 * 113.46712 * 254.43665 * 10 9 7 26 26 H 1.09000 * 109.61554 * 64.77877 * 15 12 11 27 27 H 1.08998 * 109.52657 * 56.94027 * 16 15 12 28 28 H 1.09003 * 109.57546 * 296.78077 * 16 15 12 29 29 H 1.08993 * 109.48033 * 62.37417 * 17 16 15 30 30 H 1.09001 * 109.48095 * 182.40698 * 17 16 15 31 31 H 1.08996 * 109.47929 * 178.85800 * 19 18 17 32 32 H 1.09003 * 109.48309 * 58.82109 * 19 18 17 33 33 H 1.08988 * 109.52177 * 297.70819 * 20 19 18 34 34 H 1.09001 * 109.52270 * 177.51285 * 20 19 18 35 35 H 1.08999 * 113.47084 * 141.67851 * 21 11 10 36 36 H 1.09001 * 113.46770 * 272.11503 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.1488 -3.7441 -0.0016 11 7 1.2093 -4.3578 0.9490 12 16 0.7478 -5.8986 1.3430 13 8 0.9934 -6.6506 0.1625 14 8 -0.5689 -5.7497 1.8561 15 6 1.8928 -6.3910 2.6610 16 6 1.6480 -7.8570 3.0312 17 6 2.6698 -8.2860 4.0875 18 8 3.9905 -8.0851 3.5799 19 6 4.2924 -6.7252 3.2611 20 6 3.3357 -6.2335 2.1715 21 6 0.8551 -3.0006 1.3911 22 1 -0.4851 0.8401 -0.0004 23 1 0.4438 -2.5299 -0.7334 24 1 3.1381 -3.5659 0.4197 25 1 2.1858 -4.2527 -0.9650 26 1 1.7343 -5.7623 3.5372 27 1 1.7580 -8.4802 2.1437 28 1 0.6407 -7.9691 3.4323 29 1 2.5324 -7.6897 4.9894 30 1 2.5277 -9.3406 4.3236 31 1 5.3190 -6.6554 2.9018 32 1 4.1762 -6.1084 4.1523 33 1 3.4799 -6.8238 1.2668 34 1 3.5354 -5.1834 1.9583 35 1 -0.2057 -2.8782 1.6096 36 1 1.4963 -2.6223 2.1872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259907068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = -112.012713 kcal Electronic energy + Delta-G solvation = -20174.438143 eV Core-core repulsion = 16978.884901 eV Total energy + Delta-G solvation = -3195.553242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.25463 -39.92950 -38.24402 -37.10796 -34.98475 -34.56575 -32.22968 -30.09735 -26.69057 -26.61419 -26.26873 -24.67061 -21.89944 -21.40159 -19.72810 -18.83013 -18.35115 -17.91656 -17.26705 -16.97094 -16.52405 -16.46826 -15.82024 -15.79685 -15.09694 -14.97430 -14.63023 -14.50238 -13.54999 -13.49053 -13.32009 -13.24844 -13.17182 -13.11905 -13.05991 -12.78822 -12.46510 -12.26891 -12.20634 -12.12209 -12.00020 -11.31026 -10.97923 -10.94928 -10.58665 -10.50991 -9.73880 -8.11268 -6.22695 -0.84327 1.48726 1.51530 1.57902 1.62823 2.48626 2.79880 2.88337 2.93197 3.20264 3.26706 3.45679 3.84869 3.92878 4.13817 4.19924 4.36041 4.40363 4.45655 4.46208 4.54421 4.65276 4.73322 4.75080 4.80850 4.87223 4.97162 5.01130 5.12818 5.14975 5.66188 5.87837 5.89009 6.18511 6.30452 6.88876 7.47240 8.99256 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.005036 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.518217 B = 5558.810340 C = 6114.445301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.257 1.257 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.012 3.988 10 C 0.135 3.865 11 N -1.044 6.044 12 S 2.624 3.376 13 O -0.988 6.988 14 O -0.998 6.998 15 C -0.572 4.572 16 C -0.154 4.154 17 C 0.070 3.930 18 O -0.398 6.398 19 C 0.069 3.931 20 C -0.143 4.143 21 C 0.136 3.864 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.157 0.843 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.037 0.963 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 -12.568 9.399 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.095 0.905 9 C -0.009 4.009 10 C 0.010 3.990 11 N -0.883 5.883 12 S 2.726 3.274 13 O -0.979 6.979 14 O -0.989 6.989 15 C -0.684 4.684 16 C -0.193 4.193 17 C -0.008 4.008 18 O -0.317 6.317 19 C -0.009 4.009 20 C -0.182 4.182 21 C 0.010 3.990 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.175 0.825 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.055 0.945 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.903 -13.329 9.009 17.925 hybrid contribution -0.144 1.323 0.188 1.344 sum 7.759 -12.006 9.196 16.997 Atomic orbital electron populations 1.70118 1.07809 1.27602 1.51036 1.25860 0.95457 1.02892 0.94386 0.85468 0.79488 0.79262 0.77153 1.18044 1.21455 1.20976 1.21365 0.93629 0.90245 1.50490 0.90548 1.20302 0.94996 0.92572 0.93034 1.22775 0.93675 0.91598 0.90952 1.59901 1.56648 1.19339 1.52369 1.04526 0.75159 0.71678 0.76019 1.93492 1.86976 1.70983 1.46419 1.93502 1.37218 1.85488 1.82657 1.30444 1.12178 1.07428 1.18396 1.22215 1.03124 0.91030 1.02942 1.22642 0.80551 1.03440 0.94138 1.87920 1.31585 1.27592 1.84583 1.22648 0.99102 0.82591 0.96536 1.22100 0.90624 1.04546 1.00937 1.22767 0.98623 0.76723 1.00881 0.92924 0.95465 0.88012 0.91941 0.82550 0.89985 0.88097 0.91121 0.86173 0.86543 0.91283 0.90209 0.88155 0.94471 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.32 13.26 21.44 0.28 -52.03 16 2 C 0.01 0.69 5.46 84.65 0.46 1.16 16 3 Si 0.96 40.50 29.54 68.60 2.03 42.53 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.52 -25.63 8.82 25.60 0.23 -25.40 16 8 H 0.08 3.51 7.81 -2.91 -0.02 3.48 16 9 C 0.01 0.58 3.77 -11.30 -0.04 0.54 16 10 C 0.13 4.99 7.92 83.17 0.66 5.65 16 11 N -1.04 -38.84 3.67 -550.59 -2.02 -40.86 16 12 S 2.62 89.71 5.41 -56.49 -0.31 89.40 16 13 O -0.99 -38.83 18.06 -127.65 -2.31 -41.14 16 14 O -1.00 -41.10 18.07 -127.65 -2.31 -43.40 16 15 C -0.57 -12.99 2.96 30.71 0.09 -12.90 16 16 C -0.15 -3.00 5.43 30.68 0.17 -2.83 16 17 C 0.07 1.10 6.84 72.01 0.49 1.59 16 18 O -0.40 -7.89 10.77 -148.98 -1.60 -9.49 16 19 C 0.07 1.16 6.84 72.02 0.49 1.65 16 20 C -0.14 -2.96 5.27 30.69 0.16 -2.80 16 21 C 0.14 5.73 8.25 83.08 0.69 6.42 16 22 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 23 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 24 H 0.10 3.13 7.66 -2.39 -0.02 3.11 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 1.95 7.09 -2.39 -0.02 1.94 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 3.39 8.10 -2.39 -0.02 3.37 16 Total: -1.00 -68.79 310.14 -1.78 -70.56 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.06 Total: 11.34 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.39 Total: -26.91 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -1.73 Total: -92.89 kcal Atomic # 8 Polarization: -87.82 SS G_CDS: -6.22 Total: -94.04 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 89.71 SS G_CDS: -0.31 Total: 89.40 kcal Total: -68.79 -1.78 -70.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259907068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.448 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds