Wall clock time and date at job start Mon Mar 30 2020 01:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00337 * 2 1 4 4 H 1.48500 * 109.47445 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46996 * 119.99848 * 3 2 1 6 6 H 1.48496 * 109.47801 * 239.99833 * 3 2 1 7 7 C 1.37876 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 185.46597 * 7 2 1 9 9 C 1.50699 * 120.00098 * 5.45636 * 7 2 1 10 10 C 1.52999 * 115.55385 * 279.44922 * 9 7 2 11 11 S 1.81397 * 109.46899 * 294.74300 * 10 9 7 12 12 O 1.42102 * 110.54474 * 297.67660 * 11 10 9 13 13 O 1.42094 * 110.54481 * 74.43258 * 11 10 9 14 14 N 1.65601 * 104.45037 * 186.05728 * 11 10 9 15 15 C 1.47065 * 136.05646 * 269.63162 * 14 11 10 16 16 C 1.53754 * 87.89051 * 152.96028 * 15 14 11 17 17 C 1.53001 * 114.26771 * 139.79194 * 16 15 14 18 18 O 1.42904 * 109.46851 * 91.47411 * 17 16 15 19 19 C 1.47064 * 136.06099 * 89.99621 * 14 11 10 20 20 C 1.53003 * 117.49844 * 133.73782 * 9 7 2 21 21 C 1.52996 * 60.00136 * 252.51414 * 20 9 7 22 22 H 0.97009 * 119.99830 * 354.99204 * 1 2 3 23 23 H 1.08999 * 109.47203 * 54.73986 * 10 9 7 24 24 H 1.09000 * 109.47179 * 174.74406 * 10 9 7 25 25 H 1.09003 * 113.46998 * 267.69399 * 15 14 11 26 26 H 1.09005 * 113.46613 * 38.13106 * 15 14 11 27 27 H 1.09003 * 114.38984 * 272.67853 * 16 15 14 28 28 H 1.08990 * 109.46970 * 211.47339 * 17 16 15 29 29 H 1.08997 * 109.46850 * 331.47863 * 17 16 15 30 30 H 0.96705 * 113.99712 * 180.02562 * 18 17 16 31 31 H 1.08997 * 113.46635 * 321.86670 * 19 14 11 32 32 H 1.08999 * 113.46994 * 92.24785 * 19 14 11 33 33 H 1.09006 * 117.49761 * 0.02562 * 20 9 7 34 34 H 1.08999 * 117.50274 * 145.01810 * 20 9 7 35 35 H 1.09007 * 117.49618 * 252.50923 * 21 20 9 36 36 H 1.09002 * 117.50172 * 107.48937 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2844 2.7464 0.0006 5 1 3.1030 1.6962 1.2126 6 1 3.1030 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1964 0.0886 9 6 1.2560 -2.4961 -0.1252 10 6 0.6203 -3.0181 1.1649 11 16 1.9238 -3.4358 2.3552 12 8 2.7487 -4.4753 1.8471 13 8 2.4898 -2.2560 2.9093 14 7 1.1182 -4.1358 3.6215 15 6 0.5020 -3.6688 4.8725 16 6 -0.4450 -4.8774 4.7906 17 6 -0.7159 -5.5562 6.1347 18 8 -1.8760 -4.9771 6.7355 19 6 0.7098 -5.4989 3.9930 20 6 1.7966 -3.5297 -1.1154 21 6 0.5132 -2.7612 -1.4363 22 1 -0.4850 0.8369 0.0733 23 1 -0.0258 -2.2492 1.5885 24 1 0.0303 -3.9079 0.9450 25 1 1.1766 -3.7032 5.7279 26 1 -0.0064 -2.7097 4.7742 27 1 -1.3484 -4.7025 4.2063 28 1 -0.8821 -6.6217 5.9766 29 1 0.1422 -5.4158 6.7921 30 1 -2.1074 -5.3598 7.5930 31 1 0.3785 -6.0989 3.1455 32 1 1.4397 -6.0162 4.6157 33 1 2.6939 -3.2681 -1.6763 34 1 1.6997 -4.5819 -0.8477 35 1 -0.4282 -3.3078 -1.3798 36 1 0.5658 -1.9938 -2.2086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323614073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:49 Heat of formation + Delta-G solvation = -59.252210 kcal Electronic energy + Delta-G solvation = -20063.278147 eV Core-core repulsion = 16870.012772 eV Total energy + Delta-G solvation = -3193.265375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.56646 -36.75724 -36.53847 -36.19505 -35.05525 -32.04783 -29.90826 -28.13037 -25.95070 -25.50334 -24.84518 -21.22038 -20.45749 -19.40642 -18.28947 -17.51329 -16.99163 -16.50629 -15.83062 -15.55599 -14.95200 -14.70454 -14.57442 -13.87753 -13.55979 -13.27489 -13.05715 -12.79015 -12.46937 -11.91268 -11.82594 -11.53493 -11.26649 -11.18470 -11.03627 -10.89097 -10.78493 -10.72004 -10.58739 -10.45920 -10.12116 -10.05105 -9.68767 -8.98899 -8.86846 -8.57932 -8.07552 -6.13002 -4.24305 1.00102 3.31999 3.33744 3.35788 3.42664 3.87839 4.38011 4.38651 4.64668 4.73804 4.77632 5.01419 5.12579 5.17747 5.21429 5.31225 5.41115 5.48056 5.53692 5.66462 5.75848 5.88625 6.20658 6.25273 6.30848 6.39803 6.62354 6.66942 6.71209 6.98353 7.24735 7.37459 7.41605 7.81036 8.20374 8.80916 9.47317 10.94870 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.005801 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.110152 B = 4825.690919 C = 5199.453570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.547 4.547 11 S 2.627 3.373 12 O -0.970 6.970 13 O -0.944 6.944 14 N -1.053 6.053 15 C 0.134 3.866 16 C -0.130 4.130 17 C 0.086 3.914 18 O -0.571 6.571 19 C 0.136 3.864 20 C -0.207 4.207 21 C -0.143 4.143 22 H 0.264 0.736 23 H 0.135 0.865 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.378 0.622 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -11.297 10.754 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.123 4.123 3 Si 0.719 3.281 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.680 4.680 11 S 2.727 3.273 12 O -0.961 6.961 13 O -0.935 6.935 14 N -0.889 5.889 15 C 0.008 3.992 16 C -0.150 4.150 17 C 0.008 3.992 18 O -0.377 6.377 19 C 0.010 3.990 20 C -0.244 4.244 21 C -0.182 4.182 22 H 0.074 0.926 23 H 0.154 0.846 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.224 0.776 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.969 -10.567 9.939 14.807 hybrid contribution -0.322 0.580 0.308 0.732 sum -3.291 -9.987 10.247 14.682 Atomic orbital electron populations 1.69963 1.06049 1.27352 1.47763 1.24957 0.94835 0.99266 0.93255 0.86633 0.79908 0.82349 0.79254 1.21076 1.19430 1.19863 1.20493 0.93229 0.88483 1.53164 0.91420 1.18298 0.98696 0.94193 0.84781 1.29959 1.16007 1.08426 1.13613 1.04699 0.75763 0.73238 0.73569 1.93481 1.64491 1.57831 1.80261 1.93530 1.74861 1.48653 1.76427 1.60574 1.76593 1.17774 1.33950 1.22490 0.92492 0.98301 0.85888 1.23243 0.98452 0.97461 0.95885 1.22118 0.87630 0.96046 0.93442 1.86527 1.47078 1.65238 1.38812 1.22294 0.93714 0.85113 0.97925 1.23162 0.98510 0.95892 1.06883 1.22577 0.92927 1.01365 1.01380 0.92638 0.84646 0.88451 0.90256 0.90180 0.86949 0.93112 0.93114 0.77564 0.90399 0.90157 0.89513 0.90668 0.91505 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 13.10 55.43 0.73 -23.78 16 2 C 0.08 2.27 5.42 -17.82 -0.10 2.18 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.39 8.17 -34.44 -0.28 -14.68 16 8 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 9 C 0.04 1.07 1.26 -155.66 -0.20 0.87 16 10 C -0.55 -11.92 6.03 37.16 0.22 -11.70 16 11 S 2.63 56.10 5.70 -107.50 -0.61 55.49 16 12 O -0.97 -22.17 18.07 -57.54 -1.04 -23.21 16 13 O -0.94 -23.68 17.73 -57.54 -1.02 -24.70 16 14 N -1.05 -17.12 4.10 -125.04 -0.51 -17.63 16 15 C 0.13 1.81 8.27 -8.38 -0.07 1.74 16 16 C -0.13 -1.41 4.37 -89.97 -0.39 -1.80 16 17 C 0.09 0.71 6.97 37.16 0.26 0.96 16 18 O -0.57 -5.19 13.66 -35.23 -0.48 -5.67 16 19 C 0.14 1.62 8.26 -8.52 -0.07 1.55 16 20 C -0.21 -4.62 9.96 -26.73 -0.27 -4.89 16 21 C -0.14 -3.30 9.67 -26.73 -0.26 -3.56 16 22 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 23 H 0.14 3.11 8.14 -51.92 -0.42 2.69 16 24 H 0.10 1.80 8.09 -51.92 -0.42 1.38 16 25 H 0.08 0.94 7.88 -51.93 -0.41 0.53 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.36 7.81 -51.93 -0.41 -0.05 16 30 H 0.38 1.60 9.12 45.56 0.42 2.02 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.81 8.11 -51.93 -0.42 0.38 16 33 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -34.90 322.02 -8.85 -43.75 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.59 Total: 3.53 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -1.15 Total: -29.33 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.21 Total: -41.41 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -2.54 Total: -53.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 56.10 SS G_CDS: -0.61 Total: 55.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.90 -8.85 -43.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323614073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.501 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds