Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48495 * 109.47165 * 239.99924 * 3 2 1 5 5 H 1.48504 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46881 * 120.00026 * 3 2 1 7 7 C 1.37873 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46949 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00154 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99742 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99863 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.38529 * 35.00190 * 14 13 11 16 16 C 1.52587 * 109.38565 * 154.79088 * 14 13 11 17 17 C 1.52579 * 110.64492 * 190.03997 * 16 14 13 18 18 C 1.53034 * 109.98871 * 290.01188 * 17 16 14 19 19 S 1.81671 * 108.99885 * 63.64502 * 18 17 16 20 20 O 1.42106 * 108.65946 * 60.03385 * 19 18 17 21 21 O 1.42098 * 108.66688 * 191.37428 * 19 18 17 22 22 C 1.53041 * 109.29832 * 275.26157 * 14 13 11 23 23 H 0.97001 * 119.99706 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 60.00516 * 9 7 2 25 25 H 1.08996 * 109.47738 * 300.00387 * 9 7 2 26 26 H 1.08998 * 109.47126 * 60.00057 * 10 9 7 27 27 H 1.08994 * 109.47246 * 299.99838 * 10 9 7 28 28 H 0.96998 * 120.00019 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.23928 * 310.34230 * 16 14 13 30 30 H 1.09001 * 109.24442 * 69.77549 * 16 14 13 31 31 H 1.09002 * 109.38816 * 50.16790 * 17 16 14 32 32 H 1.09004 * 109.38663 * 169.85442 * 17 16 14 33 33 H 1.09000 * 109.55384 * 183.50288 * 18 17 16 34 34 H 1.09006 * 109.54861 * 303.79654 * 18 17 16 35 35 H 1.08993 * 109.54843 * 296.10111 * 22 14 13 36 36 H 1.08993 * 109.54818 * 56.39609 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9671 -0.0021 13 7 2.1656 -6.1344 -0.0008 14 6 1.4330 -7.4031 -0.0008 15 1 0.5229 -7.2954 -0.5909 16 6 2.3078 -8.4930 -0.6134 17 6 1.4956 -9.7616 -0.8561 18 6 1.1349 -10.4154 0.4798 19 16 0.0620 -9.2894 1.4187 20 8 -1.1153 -9.0459 0.6611 21 8 -0.0533 -9.7749 2.7492 22 6 1.0649 -7.7747 1.4375 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 3.1356 -6.1344 0.0003 29 1 2.7121 -8.1384 -1.5615 30 1 3.1300 -8.7179 0.0660 31 1 0.5816 -9.5089 -1.3935 32 1 2.0834 -10.4590 -1.4530 33 1 0.6091 -11.3525 0.2971 34 1 2.0446 -10.6106 1.0477 35 1 1.9739 -7.9462 2.0138 36 1 0.4928 -6.9640 1.8885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324742509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -124.769144 kcal Electronic energy + Delta-G solvation = -19397.583098 eV Core-core repulsion = 16201.476696 eV Total energy + Delta-G solvation = -3196.106402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.67943 -37.57702 -36.92049 -36.19455 -33.95491 -33.48322 -31.37603 -30.23715 -28.09031 -25.83831 -23.70771 -21.82918 -21.13541 -19.71080 -19.02287 -17.33523 -16.99145 -16.63740 -16.01640 -15.72610 -15.54581 -15.34073 -14.72811 -14.44548 -14.31626 -13.81055 -13.32892 -13.22160 -12.75753 -12.30570 -12.24937 -12.19329 -12.09672 -11.84901 -11.74714 -11.31421 -11.20930 -11.13702 -10.92756 -10.65544 -10.55864 -9.99381 -9.70988 -9.23574 -9.06881 -9.03200 -8.33778 -5.97608 -4.02613 -0.22898 2.41530 3.10618 3.31396 3.33074 3.38405 3.40079 3.44201 3.67862 4.10350 4.22401 4.32573 4.41564 4.45950 4.63337 4.85081 4.92066 5.08242 5.28667 5.34363 5.37207 5.44519 5.54359 5.68114 5.80471 6.16230 6.17451 6.52574 6.83538 7.70961 7.74542 7.82804 8.04674 8.35501 8.66483 9.05555 9.61123 11.13231 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.040135 B = 0.003472 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.484350 B = 8063.413459 C = 8383.120878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.527 6.527 13 N -0.735 5.735 14 C 0.158 3.842 15 H 0.107 0.893 16 C -0.149 4.149 17 C -0.106 4.106 18 C -0.608 4.608 19 S 2.420 3.580 20 O -0.929 6.929 21 O -0.944 6.944 22 C -0.619 4.619 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.400 0.600 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -22.505 -0.657 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.073 0.927 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.297 3.703 12 O -0.401 6.401 13 N -0.389 5.389 14 C 0.051 3.949 15 H 0.125 0.875 16 C -0.187 4.187 17 C -0.145 4.145 18 C -0.736 4.736 19 S 2.601 3.399 20 O -0.926 6.926 21 O -0.941 6.941 22 C -0.750 4.750 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.234 0.766 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.306 -22.517 -0.278 23.385 hybrid contribution 1.795 1.009 -0.113 2.063 sum 8.101 -21.508 -0.391 22.986 Atomic orbital electron populations 1.69986 1.06063 1.26765 1.49907 1.25023 0.94825 0.99235 0.95247 0.86646 0.79540 0.83169 0.78520 1.20248 1.21259 1.20266 1.21166 0.92863 0.91007 1.51758 0.92668 1.18911 0.93176 0.89354 0.98711 1.21884 1.00764 0.91721 1.02580 1.21707 0.88809 0.85674 0.74143 1.90705 1.14371 1.87463 1.47550 1.46221 1.09966 1.04673 1.78047 1.20497 0.97789 0.85095 0.91511 0.87531 1.22017 0.99071 0.94070 1.03520 1.21201 1.02401 0.96412 0.94484 1.30294 1.16796 1.15757 1.10797 1.08018 0.77499 0.78508 0.75840 1.93624 1.42207 1.84275 1.72499 1.93595 1.86158 1.79146 1.35215 1.30793 1.16082 1.21617 1.06459 0.92837 0.95726 0.95810 0.90153 0.90091 0.76580 0.88729 0.90115 0.89249 0.88999 0.84719 0.84879 0.84812 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.51 5.64 -27.88 -0.16 -2.66 16 11 C 0.51 9.16 7.79 -10.98 -0.09 9.07 16 12 O -0.53 -11.97 15.64 5.56 0.09 -11.89 16 13 N -0.73 -8.83 5.07 -53.99 -0.27 -9.10 16 14 C 0.16 1.63 2.28 -68.12 -0.16 1.47 16 15 H 0.11 1.35 7.44 -51.93 -0.39 0.97 16 16 C -0.15 -0.86 5.08 -27.16 -0.14 -1.00 16 17 C -0.11 -0.55 5.73 -26.93 -0.15 -0.71 16 18 C -0.61 -3.13 6.35 37.18 0.24 -2.90 16 19 S 2.42 23.40 5.31 -107.50 -0.57 22.83 16 20 O -0.93 -12.97 17.94 -57.81 -1.04 -14.01 16 21 O -0.94 -12.24 18.10 -57.81 -1.05 -13.29 16 22 C -0.62 -6.01 5.91 37.18 0.22 -5.79 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.09 0.54 8.01 -51.93 -0.42 0.12 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.14 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -39.61 313.34 -8.51 -48.12 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.34 Total: -2.04 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.77 Total: -15.25 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.46 Total: -35.69 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.00 Total: -39.18 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 23.40 SS G_CDS: -0.57 Total: 22.83 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -39.61 -8.51 -48.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.651 kcal (2) G-P(sol) polarization free energy of solvation -39.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds