Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46971 * 300.00337 * 3 2 1 6 6 H 1.48500 * 109.46790 * 60.00064 * 3 2 1 7 7 C 1.37876 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00510 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47126 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99773 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.27964 * 57.88977 * 15 14 13 17 17 C 1.54158 * 110.31995 * 180.02562 * 15 14 13 18 18 C 1.53876 * 108.70365 * 146.81128 * 17 15 14 19 19 C 1.55042 * 106.62627 * 312.81861 * 18 17 15 20 20 S 1.82919 * 110.31891 * 295.66557 * 15 14 13 21 21 O 1.42101 * 109.35475 * 352.37182 * 20 15 14 22 22 O 1.42102 * 109.34945 * 125.57536 * 20 15 14 23 23 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99814 * 9 7 2 25 25 H 1.08996 * 109.47747 * 300.00027 * 9 7 2 26 26 H 1.08998 * 109.46509 * 60.00400 * 10 9 7 27 27 H 1.08993 * 109.46955 * 299.99960 * 10 9 7 28 28 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 29 29 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 30 30 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 31 31 H 1.09003 * 109.65047 * 266.66702 * 17 15 14 32 32 H 1.09009 * 109.64636 * 27.09316 * 17 15 14 33 33 H 1.08999 * 110.02811 * 72.11491 * 18 17 15 34 34 H 1.09004 * 110.02740 * 193.48022 * 18 17 15 35 35 H 1.09000 * 110.78812 * 160.69731 * 19 18 17 36 36 H 1.08996 * 110.79198 * 284.16753 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 8 0.2790 -4.9672 -0.0015 13 7 2.1657 -6.1344 -0.0031 14 6 1.4331 -7.4031 -0.0031 15 6 2.4274 -8.5661 -0.0046 16 1 3.0867 -8.5005 0.8610 17 6 1.6764 -9.9124 -0.0053 18 6 2.5009 -10.9369 -0.8043 19 6 2.9197 -10.2375 -2.1232 20 16 3.4036 -8.5653 -1.5515 21 8 2.8747 -7.5920 -2.4416 22 8 4.7887 -8.5590 -1.2341 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5572 0.8896 26 1 2.8725 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 3.1356 -6.1344 -0.0035 29 1 0.8061 -7.4605 -0.8929 30 1 0.8069 -7.4612 0.8871 31 1 1.5505 -10.2624 1.0193 32 1 0.6995 -9.7869 -0.4723 33 1 3.3860 -11.2268 -0.2381 34 1 1.8939 -11.8153 -1.0233 35 1 3.7658 -10.7499 -2.5810 36 1 2.0794 -10.1814 -2.8151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324913835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -154.037465 kcal Electronic energy + Delta-G solvation = -19315.698198 eV Core-core repulsion = 16118.322626 eV Total energy + Delta-G solvation = -3197.375572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79822 -38.15186 -37.92267 -37.08874 -35.72928 -35.50269 -33.13112 -31.62657 -28.22149 -26.95256 -24.61407 -23.30707 -22.46327 -21.15913 -19.72677 -18.86702 -18.20568 -17.81993 -17.27137 -17.10039 -16.62329 -16.43389 -16.37284 -15.28563 -15.12082 -14.80445 -14.72637 -14.27933 -14.16587 -13.75234 -13.26811 -13.21425 -13.07171 -12.97604 -12.92150 -12.82881 -12.67805 -12.44791 -11.95235 -11.81686 -11.66118 -11.56257 -11.30099 -11.12647 -10.80512 -10.58263 -10.20172 -8.18602 -6.32532 -0.95919 1.41715 1.43542 1.56149 1.57026 1.64872 2.08004 2.43355 2.64469 2.89816 3.14200 3.43361 3.47442 3.74671 3.85426 3.98582 4.09140 4.20528 4.45733 4.49224 4.55652 4.59039 4.70542 4.78729 5.03373 5.06401 5.09344 5.19121 5.29255 5.49246 5.61670 5.84259 6.17201 6.37008 6.85107 7.21004 7.37382 8.94393 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.040240 B = 0.003518 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.650382 B = 7958.242377 C = 8342.363966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.007 4.007 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.042 3.958 10 C -0.127 4.127 11 C 0.518 3.482 12 O -0.579 6.579 13 N -0.734 5.734 14 C 0.135 3.865 15 C -0.551 4.551 16 H 0.169 0.831 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.566 4.566 20 S 2.353 3.647 21 O -0.975 6.975 22 O -0.974 6.974 23 H 0.263 0.737 24 H -0.017 1.017 25 H -0.012 1.012 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.406 0.594 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.036 -28.314 -0.196 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.005 3.995 10 C -0.167 4.167 11 C 0.306 3.694 12 O -0.458 6.458 13 N -0.388 5.388 14 C 0.011 3.989 15 C -0.662 4.662 16 H 0.187 0.813 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.699 4.699 20 S 2.541 3.459 21 O -0.972 6.972 22 O -0.971 6.971 23 H 0.072 0.928 24 H 0.001 0.999 25 H 0.006 0.994 26 H 0.127 0.873 27 H 0.116 0.884 28 H 0.241 0.759 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.646 -27.497 -0.598 28.547 hybrid contribution -0.065 0.694 0.172 0.718 sum 7.581 -26.803 -0.426 27.858 Atomic orbital electron populations 1.70183 1.08249 1.27785 1.51430 1.26146 0.95788 1.03951 0.94571 0.85242 0.79175 0.77969 0.77650 1.17830 1.20569 1.20355 1.21735 0.93968 0.91667 1.50867 0.90794 1.18694 0.93645 0.92251 0.94947 1.21717 0.99654 0.90477 1.04820 1.21214 0.87860 0.86472 0.73824 1.90643 1.16178 1.88275 1.50683 1.46037 1.10470 1.05711 1.76542 1.21122 0.93807 0.79623 1.04340 1.30453 1.11520 1.02676 1.21515 0.81309 1.22128 0.99541 0.87722 1.05396 1.22383 1.02807 0.99815 0.90748 1.30508 1.13566 1.17556 1.08272 1.10051 0.76069 0.80461 0.79280 1.93619 1.80851 1.59766 1.62963 1.93579 1.31060 1.87848 1.84634 0.92790 0.99901 0.99361 0.87344 0.88356 0.75890 0.90780 0.88965 0.86101 0.88507 0.87954 0.85462 0.82711 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.53 13.29 21.45 0.28 -60.24 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 3 Si 0.98 45.54 29.54 68.60 2.03 47.57 16 4 H -0.25 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 8 H 0.07 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.45 4.26 29.85 0.13 2.58 16 10 C -0.13 -5.52 5.64 29.85 0.17 -5.35 16 11 C 0.52 21.41 7.83 87.66 0.69 22.10 16 12 O -0.58 -29.14 15.98 -3.03 -0.05 -29.19 16 13 N -0.73 -21.66 5.00 -463.05 -2.31 -23.98 16 14 C 0.14 3.01 4.55 86.38 0.39 3.41 16 15 C -0.55 -6.73 3.29 30.99 0.10 -6.63 16 16 H 0.17 1.40 8.14 -2.39 -0.02 1.38 16 17 C -0.11 -0.52 5.94 31.28 0.19 -0.33 16 18 C -0.12 -0.25 6.48 31.59 0.20 -0.05 16 19 C -0.57 -3.70 7.30 72.68 0.53 -3.17 16 20 S 2.35 40.43 5.54 -56.49 -0.31 40.12 16 21 O -0.97 -27.18 16.81 -127.49 -2.14 -29.32 16 22 O -0.97 -22.93 18.14 -127.49 -2.31 -25.24 16 23 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 24 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 25 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 16 26 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 27 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.41 9.78 8.23 -92.71 -0.76 9.01 16 29 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.10 0.41 7.86 -2.38 -0.02 0.39 16 33 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 35 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -91.81 315.02 -1.41 -93.22 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.31 Total: 6.40 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.09 Total: -19.34 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.03 Total: -84.22 kcal Atomic # 8 Polarization: -79.25 SS G_CDS: -4.50 Total: -83.75 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 40.43 SS G_CDS: -0.31 Total: 40.12 kcal Total: -91.81 -1.41 -93.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324913835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.816 kcal (2) G-P(sol) polarization free energy of solvation -91.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds