Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48493 * 109.47679 * 270.00209 * 3 2 1 5 5 H 1.48494 * 109.47333 * 30.00817 * 3 2 1 6 6 H 1.48512 * 109.46910 * 150.00192 * 3 2 1 7 7 C 1.37877 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00132 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99492 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47381 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00108 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.44748 * 119.58811 * 180.02562 * 13 11 10 15 15 C 1.54211 * 109.64536 * 277.68483 * 14 13 11 16 16 C 1.45736 * 113.00878 * 280.46655 * 15 14 13 17 17 S 1.81930 * 113.28977 * 65.64426 * 16 15 14 18 18 O 1.42100 * 108.54727 * 39.14888 * 17 16 15 19 19 O 1.42101 * 108.54523 * 170.04006 * 17 16 15 20 20 C 1.79958 * 102.17626 * 284.59494 * 17 16 15 21 21 C 1.46291 * 119.59230 * 359.97438 * 13 11 10 22 22 H 0.97002 * 120.00500 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47898 * 59.99832 * 9 7 2 24 24 H 1.09000 * 109.47074 * 299.99391 * 9 7 2 25 25 H 1.09006 * 109.46927 * 59.99674 * 10 9 7 26 26 H 1.09001 * 109.47216 * 299.99766 * 10 9 7 27 27 H 1.09000 * 109.44519 * 157.62596 * 14 13 11 28 28 H 1.09004 * 109.44316 * 37.73896 * 14 13 11 29 29 H 1.08998 * 108.77700 * 159.55608 * 15 14 13 30 30 H 1.09007 * 108.77364 * 41.37798 * 15 14 13 31 31 H 1.08997 * 108.72171 * 304.65829 * 16 15 14 32 32 H 1.09001 * 108.62349 * 186.55668 * 16 15 14 33 33 H 1.09004 * 109.19601 * 204.79056 * 20 17 16 34 34 H 1.09005 * 109.19063 * 324.06338 * 20 17 16 35 35 H 1.08993 * 108.34651 * 258.55662 * 21 13 11 36 36 H 1.09004 * 108.33990 * 15.78562 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0003 13 7 2.1659 -6.1343 -0.0026 14 6 1.4333 -7.3827 -0.0026 15 6 1.0050 -7.7324 1.4370 16 6 2.0812 -8.3199 2.2247 17 16 3.4562 -7.1696 2.5349 18 8 2.9176 -5.8793 2.7883 19 8 4.3287 -7.7557 3.4911 20 6 4.2916 -7.1381 0.9413 21 6 3.6288 -6.1237 -0.0054 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6249 -2.5571 0.8897 25 1 2.8728 -3.6046 0.8877 26 1 2.8713 -3.6039 -0.8923 27 1 2.0689 -8.1764 -0.3950 28 1 0.5479 -7.2838 -0.6307 29 1 0.1756 -8.4383 1.3946 30 1 0.6638 -6.8232 1.9321 31 1 2.4667 -9.1912 1.6954 32 1 1.6743 -8.6449 3.1822 33 1 5.3355 -6.8614 1.0893 34 1 4.2449 -8.1304 0.4926 35 1 3.9714 -6.3263 -1.0201 36 1 3.9651 -5.1257 0.2756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327618260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -137.335654 kcal Electronic energy + Delta-G solvation = -20291.135663 eV Core-core repulsion = 17094.484336 eV Total energy + Delta-G solvation = -3196.651327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22594 -38.24148 -37.50067 -37.00715 -35.66458 -35.08170 -32.89499 -32.08277 -28.76117 -26.97958 -24.82062 -24.14588 -22.49514 -20.05600 -19.54868 -18.88280 -18.09212 -17.85604 -17.45282 -17.02063 -16.46299 -16.44611 -16.18048 -15.49158 -15.16133 -14.78370 -14.39187 -14.14292 -13.96226 -13.84592 -13.49269 -13.27120 -13.11032 -12.97784 -12.81425 -12.65293 -12.54506 -12.38608 -12.14122 -11.89770 -11.69219 -11.54299 -11.29682 -11.18022 -10.65180 -10.55301 -9.74401 -8.16804 -6.30716 -0.91386 1.41721 1.45367 1.56183 1.68103 1.81212 2.04808 2.43978 2.79321 2.93068 3.15972 3.53258 3.62764 3.79438 3.88143 4.05105 4.22015 4.37248 4.43052 4.46630 4.55672 4.59416 4.64188 4.78504 4.89971 5.00046 5.11567 5.19621 5.49410 5.65162 5.69049 5.86412 6.19239 6.27524 6.87203 7.26549 7.39193 8.96162 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.027643 B = 0.004874 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.682147 B = 5743.540337 C = 6177.422167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.125 4.125 11 C 0.522 3.478 12 O -0.577 6.577 13 N -0.620 5.620 14 C 0.090 3.910 15 C -0.130 4.130 16 C -0.578 4.578 17 S 2.397 3.603 18 O -0.985 6.985 19 O -0.986 6.986 20 C -0.607 4.607 21 C 0.108 3.892 22 H 0.263 0.737 23 H -0.014 1.014 24 H -0.024 1.024 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.040 0.960 31 H 0.181 0.819 32 H 0.142 0.858 33 H 0.176 0.824 34 H 0.188 0.812 35 H 0.124 0.876 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -22.834 -1.064 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.165 4.165 11 C 0.313 3.687 12 O -0.455 6.455 13 N -0.354 5.354 14 C -0.032 4.032 15 C -0.170 4.170 16 C -0.708 4.708 17 S 2.585 3.415 18 O -0.982 6.982 19 O -0.983 6.983 20 C -0.739 4.739 21 C -0.015 4.015 22 H 0.071 0.929 23 H 0.005 0.995 24 H -0.005 1.005 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.160 0.840 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.199 0.801 32 H 0.160 0.840 33 H 0.193 0.807 34 H 0.205 0.795 35 H 0.141 0.859 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.077 -22.283 -0.257 24.886 hybrid contribution -0.523 0.768 -0.216 0.954 sum 10.553 -21.516 -0.473 23.969 Atomic orbital electron populations 1.70180 1.08329 1.27780 1.51547 1.26148 0.95746 1.03961 0.94606 0.85310 0.78579 0.77623 0.78659 1.19281 1.21206 1.18124 1.21712 0.93964 0.91664 1.50734 0.90705 1.18684 0.93718 0.92586 0.94505 1.21714 0.99614 0.90851 1.04282 1.21165 0.87563 0.86626 0.73395 1.90634 1.16370 1.87971 1.50566 1.47751 1.07280 1.05861 1.74530 1.21877 0.99072 0.86032 0.96252 1.20446 0.99014 1.01650 0.95881 1.28778 1.14489 1.16405 1.11160 1.08255 0.78157 0.76366 0.78771 1.93596 1.79516 1.40128 1.84971 1.93544 1.65665 1.79623 1.59445 1.30503 1.14423 1.11415 1.17604 1.21408 0.77732 1.00437 1.01936 0.92864 0.99549 1.00543 0.88610 0.87332 0.84045 0.90543 0.86967 0.94075 0.80135 0.84019 0.80666 0.79475 0.85852 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.10 13.29 21.45 0.28 -60.81 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.49 4.26 29.85 0.13 2.62 16 10 C -0.13 -5.36 3.98 29.85 0.12 -5.24 16 11 C 0.52 20.66 7.38 87.66 0.65 21.31 16 12 O -0.58 -28.44 15.57 -3.02 -0.05 -28.48 16 13 N -0.62 -15.41 2.02 -822.79 -1.67 -17.07 16 14 C 0.09 1.60 5.23 87.12 0.46 2.05 16 15 C -0.13 -2.38 5.29 28.78 0.15 -2.23 16 16 C -0.58 -6.76 5.61 69.76 0.39 -6.37 16 17 S 2.40 45.79 5.11 -56.49 -0.29 45.50 16 18 O -0.98 -32.11 16.54 -127.36 -2.11 -34.21 16 19 O -0.99 -24.55 18.09 -127.36 -2.30 -26.86 16 20 C -0.61 -5.10 5.87 72.24 0.42 -4.67 16 21 C 0.11 1.67 5.44 86.68 0.47 2.14 16 22 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 23 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 24 H -0.02 -1.60 8.10 -2.39 -0.02 -1.62 16 25 H 0.10 3.95 7.47 -2.38 -0.02 3.94 16 26 H 0.11 3.90 8.04 -2.39 -0.02 3.88 16 27 H 0.14 0.76 7.63 -2.39 -0.02 0.74 16 28 H 0.08 1.69 7.60 -2.38 -0.02 1.67 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.19 7.48 -2.38 -0.02 1.17 16 31 H 0.18 0.14 8.08 -2.40 -0.02 0.12 16 32 H 0.14 1.51 8.14 -2.40 -0.02 1.49 16 33 H 0.18 0.79 8.14 -2.46 -0.02 0.77 16 34 H 0.19 -0.39 7.93 -2.46 -0.02 -0.41 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.71 5.82 -2.38 -0.01 1.69 16 Total: -1.00 -97.02 303.98 0.45 -96.57 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.07 Total: 0.08 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.48 Total: -22.23 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.38 Total: -77.89 kcal Atomic # 8 Polarization: -85.09 SS G_CDS: -4.46 Total: -89.55 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.29 Total: 45.50 kcal Total: -97.02 0.45 -96.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327618260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.764 kcal (2) G-P(sol) polarization free energy of solvation -97.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds