Wall clock time and date at job start Mon Mar 30 2020 01:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47241 * 2 1 4 4 N 1.46507 * 109.47184 * 240.00431 * 2 1 3 5 5 C 1.38819 * 120.00082 * 84.99996 * 4 2 1 6 6 C 1.39800 * 119.58338 * 359.72838 * 5 4 2 7 7 C 1.38605 * 119.48988 * 179.79026 * 6 5 4 8 8 C 1.38394 * 118.67726 * 0.47654 * 7 6 5 9 9 C 1.40545 * 119.14914 * 359.74727 * 8 7 6 10 10 C 1.41315 * 119.78377 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00108 * 0.02562 * 10 9 8 12 12 C 1.40020 * 120.00427 * 180.02562 * 10 9 8 13 13 N 1.30745 * 119.99862 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00364 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46722 * 59.99897 * 14 12 10 16 16 H 1.48494 * 109.47133 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47030 * 300.00052 * 14 12 10 18 18 N 1.31950 * 119.58686 * 180.02562 * 5 4 2 19 19 C 1.50693 * 109.47350 * 120.00677 * 2 1 3 20 20 C 1.35143 * 127.24546 * 260.00316 * 19 2 1 21 21 C 1.37817 * 114.75817 * 179.97438 * 20 19 2 22 22 N 1.30078 * 116.88020 * 0.27568 * 21 20 19 23 23 S 1.69601 * 107.15275 * 359.60216 * 22 21 20 24 24 H 1.09009 * 109.46804 * 59.99826 * 1 2 3 25 25 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47261 * 299.99863 * 1 2 3 27 27 H 0.96998 * 119.99819 * 265.00405 * 4 2 1 28 28 H 1.07998 * 120.25806 * 359.97438 * 6 5 4 29 29 H 1.07991 * 120.65904 * 180.22528 * 7 6 5 30 30 H 1.07996 * 120.41925 * 179.76911 * 8 7 6 31 31 H 0.97005 * 119.99835 * 180.02562 * 13 12 10 32 32 H 1.07997 * 122.62074 * 0.02562 * 20 19 2 33 33 H 1.08002 * 121.55569 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1509 0.0020 -2.3920 6 6 1.8105 1.3569 -2.4463 7 6 1.9478 2.0476 -3.6401 8 6 2.4118 1.3665 -4.7519 9 6 2.7329 0.0032 -4.6349 10 6 3.2083 -0.7052 -5.7614 11 1 3.3242 -0.1988 -6.7083 12 6 3.5291 -2.0636 -5.6502 13 7 3.3882 -2.6768 -4.5040 14 14 4.1568 -3.0002 -7.1395 15 1 5.4126 -2.3736 -7.6250 16 1 4.4213 -4.4116 -6.7613 17 1 3.1350 -2.9599 -8.2164 18 7 2.5911 -0.6281 -3.4645 19 6 2.0323 -0.7105 1.2303 20 6 2.4811 -0.1476 2.3740 21 6 2.8804 -1.0447 3.3409 22 7 2.7867 -2.3081 3.0456 23 16 2.1547 -2.4091 1.4750 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.2490 -1.6317 -1.1528 28 1 1.4462 1.8622 -1.5641 29 1 1.6939 3.0954 -3.7024 30 1 2.5259 1.8762 -5.6972 31 1 3.6108 -3.6178 -4.4269 32 1 2.5227 0.9218 2.5192 33 1 3.2580 -0.7142 4.2973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331336179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:39 Heat of formation + Delta-G solvation = 79.988263 kcal Electronic energy + Delta-G solvation = -18118.958630 eV Core-core repulsion = 15271.332846 eV Total energy + Delta-G solvation = -2847.625784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.02633 -38.28294 -36.08049 -33.49289 -31.82157 -30.40042 -29.49208 -28.05861 -25.56533 -25.03937 -22.49372 -21.62135 -20.34850 -19.90879 -17.85129 -17.14761 -16.58179 -15.54753 -14.99011 -14.73720 -14.47518 -14.19092 -13.64981 -13.47429 -13.16797 -13.07951 -12.70510 -12.13040 -11.94090 -11.83476 -11.65041 -11.20978 -11.02409 -10.93494 -10.63571 -10.43285 -10.41144 -9.95283 -9.66098 -9.43341 -8.96843 -8.72145 -7.95878 -7.54670 -6.62223 -6.34833 -4.49802 0.69951 1.49285 1.90583 2.45057 2.86925 3.10495 3.12720 3.20055 3.28071 3.96741 3.98859 4.51052 4.81640 5.06299 5.15664 5.35533 5.38970 5.67782 5.78825 5.86216 5.99864 6.03425 6.12318 6.34420 6.53622 6.56405 6.79661 6.85157 6.88503 7.22263 7.54108 7.75540 7.86885 8.10976 8.29597 8.57977 8.76978 9.06819 10.21007 10.37570 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.005052 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.984420 B = 5540.534199 C = 6571.086544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.236 3.764 3 H 0.098 0.902 4 N -0.734 5.734 5 C 0.413 3.587 6 C -0.369 4.369 7 C -0.031 4.031 8 C -0.315 4.315 9 C 0.292 3.708 10 C -0.433 4.433 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.715 5.715 14 Si 0.905 3.095 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.265 1.265 18 N -0.530 5.530 19 C -0.161 4.161 20 C -0.209 4.209 21 C 0.089 3.911 22 N -0.471 5.471 23 S 0.274 5.726 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.395 0.605 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.271 0.729 32 H 0.157 0.843 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 2.485 11.136 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.126 3.874 3 H 0.116 0.884 4 N -0.372 5.372 5 C 0.174 3.826 6 C -0.395 4.395 7 C -0.055 4.055 8 C -0.338 4.338 9 C 0.166 3.834 10 C -0.465 4.465 11 H 0.101 0.899 12 C -0.154 4.154 13 N -0.336 5.336 14 Si 0.730 3.270 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.190 1.190 18 N -0.251 5.251 19 C -0.292 4.292 20 C -0.244 4.244 21 C -0.109 4.109 22 N -0.292 5.292 23 S 0.426 5.574 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.231 0.769 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.174 0.826 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.766 -0.664 11.200 11.556 hybrid contribution 0.301 2.091 -0.230 2.125 sum -2.464 1.427 10.970 11.334 Atomic orbital electron populations 1.22334 0.94578 1.02718 1.02620 1.18998 0.93450 0.95681 0.79246 0.88401 1.44259 1.74720 1.12085 1.06124 1.18423 0.90118 0.87535 0.86551 1.20603 1.25111 0.95032 0.98749 1.20594 0.95139 0.96952 0.92848 1.21541 1.17140 0.96998 0.98098 1.18179 0.87364 0.88110 0.89776 1.19564 1.36987 0.94027 0.95902 0.89886 1.26048 0.94449 0.98238 0.96672 1.70130 1.29522 1.10041 1.23902 0.86432 0.80103 0.78524 0.81981 1.19001 1.20312 1.18987 1.68187 1.23310 1.36006 0.97567 1.25886 1.02229 1.00793 1.00315 1.21279 1.06793 1.03196 0.93160 1.22789 0.98463 0.88310 1.01309 1.76750 1.22054 1.21539 1.08824 1.84265 1.57227 1.03870 1.12074 0.90582 0.92289 0.92107 0.76937 0.89033 0.88883 0.88678 0.91775 0.82569 0.80167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.37 37.16 0.35 -1.85 16 2 C 0.24 3.55 2.75 -69.08 -0.19 3.36 16 3 H 0.10 1.46 6.45 -51.93 -0.33 1.13 16 4 N -0.73 -14.37 5.23 -55.03 -0.29 -14.66 16 5 C 0.41 9.79 7.63 -155.33 -1.18 8.61 16 6 C -0.37 -8.13 8.83 -38.86 -0.34 -8.47 16 7 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 8 C -0.31 -7.82 9.83 -38.65 -0.38 -8.20 16 9 C 0.29 8.03 6.55 -85.00 -0.56 7.48 16 10 C -0.43 -11.62 9.14 -37.74 -0.34 -11.97 16 11 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 12 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 13 N -0.71 -18.90 11.46 55.55 0.64 -18.27 16 14 Si 0.91 18.65 29.56 -169.99 -5.02 13.63 16 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 N -0.53 -14.42 7.89 -10.33 -0.08 -14.50 16 19 C -0.16 -2.20 5.50 -35.41 -0.19 -2.40 16 20 C -0.21 -2.39 10.17 -40.84 -0.42 -2.81 16 21 C 0.09 1.00 11.27 -18.45 -0.21 0.79 16 22 N -0.47 -6.57 12.09 28.86 0.35 -6.22 16 23 S 0.27 3.88 22.84 -107.50 -2.46 1.43 16 24 H 0.08 1.13 7.62 -51.92 -0.40 0.73 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.40 7.95 7.93 -40.82 -0.32 7.63 16 28 H 0.09 1.74 6.03 -52.49 -0.32 1.43 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 32 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -29.87 299.74 -9.76 -39.64 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.45 Total: 9.26 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.96 Total: -14.82 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.62 Total: -53.65 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.46 Total: 1.43 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.87 -9.76 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331336179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.624 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds